Wall clock time and date at job start Mon Mar 30 2020 06:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00359 * 2 1 4 4 H 1.48504 * 109.46971 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47325 * 300.00387 * 3 2 1 6 6 H 1.48503 * 109.46804 * 60.00903 * 3 2 1 7 7 C 1.37882 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00340 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46608 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.47372 * 304.99922 * 10 9 7 12 12 N 1.46899 * 109.47030 * 65.00591 * 10 9 7 13 13 C 1.50704 * 109.46583 * 184.99857 * 10 9 7 14 14 C 1.36622 * 120.07656 * 264.97451 * 13 10 9 15 15 C 1.38928 * 120.81458 * 180.02562 * 14 13 10 16 16 C 1.36504 * 120.62532 * 359.97438 * 15 14 13 17 17 C 1.39892 * 119.63847 * 0.02562 * 16 15 14 18 18 C 1.46011 * 134.03425 * 179.97438 * 17 16 15 19 19 Cl 1.73591 * 126.12019 * 0.06305 * 18 17 16 20 20 N 1.30302 * 107.75980 * 179.77013 * 18 17 16 21 21 N 1.39872 * 110.09022 * 0.41549 * 20 18 17 22 22 H 0.97001 * 125.45365 * 179.84576 * 21 20 18 23 23 C 1.37050 * 109.09807 * 359.56997 * 21 20 18 24 24 H 0.97009 * 119.99479 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47036 * 60.00474 * 9 7 2 26 26 H 1.08992 * 109.47196 * 300.00208 * 9 7 2 27 27 H 1.00898 * 111.00351 * 59.99533 * 12 10 9 28 28 H 1.00900 * 110.99596 * 183.95544 * 12 10 9 29 29 H 1.07996 * 119.59422 * 0.02562 * 14 13 10 30 30 H 1.08004 * 119.68719 * 179.97438 * 15 14 13 31 31 H 1.07997 * 120.18549 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3962 1.2127 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 1 2.9292 -3.5553 -0.8423 12 7 3.0081 -3.6541 1.2547 13 6 1.4955 -4.9637 -0.1243 14 6 1.1666 -5.6736 0.9957 15 6 0.4763 -6.8754 0.8993 16 6 0.1115 -7.3721 -0.3187 17 6 0.4368 -6.6637 -1.4803 18 6 0.2116 -6.8919 -2.9048 19 17 -0.6102 -8.2506 -3.6061 20 7 0.7325 -5.8900 -3.5550 21 7 1.3137 -4.9862 -2.6596 22 1 1.7655 -4.1635 -2.9045 23 6 1.1373 -5.4458 -1.3806 24 1 -0.4850 0.8402 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6245 -2.5570 0.8896 27 1 2.3958 -3.7518 2.0507 28 1 3.7158 -4.3733 1.2523 29 1 1.4466 -5.2959 1.9679 30 1 0.2259 -7.4218 1.7966 31 1 -0.4253 -8.3068 -0.3853 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260190234.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:30 Heat of formation + Delta-G solvation = 52.540397 kcal Electronic energy + Delta-G solvation = -17273.279601 eV Core-core repulsion = 14387.501449 eV Total energy + Delta-G solvation = -2885.778152 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.46432 -39.05633 -37.91556 -36.74424 -34.60027 -32.82119 -30.97197 -30.23753 -30.12435 -26.36319 -24.16417 -23.31544 -22.94866 -21.28097 -19.05060 -18.36621 -17.73358 -16.91147 -16.58675 -16.33936 -16.21823 -16.13918 -15.10423 -14.99031 -14.55208 -14.23153 -13.56376 -13.22141 -13.13363 -12.97136 -12.83992 -12.71753 -12.49418 -12.26122 -12.13589 -11.80489 -11.58398 -11.22009 -10.91016 -10.54651 -9.79721 -9.46798 -8.92889 -8.14266 -6.21080 -0.18970 0.27217 0.46386 1.15778 1.40600 1.42273 1.55004 1.85260 2.44597 2.73161 3.19402 3.34785 3.60786 3.84728 3.98338 4.01591 4.23123 4.40715 4.51870 4.72222 4.83107 4.95514 5.13653 5.40405 5.42351 5.50377 5.66255 5.81811 5.85138 6.10941 6.26152 6.28948 6.48212 6.82545 6.94099 7.46511 8.97280 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.026635 B = 0.005089 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.009689 B = 5501.261485 C = 6104.872949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.003 4.003 3 Si 0.959 3.041 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.505 4.505 8 H 0.062 0.938 9 C 0.048 3.952 10 C 0.153 3.847 11 H 0.065 0.935 12 N -0.826 5.826 13 C -0.138 4.138 14 C -0.075 4.075 15 C -0.140 4.140 16 C -0.047 4.047 17 C -0.182 4.182 18 C 0.133 3.867 19 Cl 0.040 6.960 20 N -0.255 5.255 21 N -0.492 5.492 22 H 0.450 0.550 23 C 0.128 3.872 24 H 0.259 0.741 25 H -0.013 1.013 26 H -0.007 1.007 27 H 0.343 0.657 28 H 0.344 0.656 29 H 0.145 0.855 30 H 0.166 0.834 31 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.182 -17.921 -0.236 17.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.200 4.200 3 Si 0.785 3.215 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.543 4.543 8 H 0.081 0.919 9 C 0.010 3.990 10 C 0.040 3.960 11 H 0.083 0.917 12 N -0.357 5.357 13 C -0.144 4.144 14 C -0.096 4.096 15 C -0.159 4.159 16 C -0.067 4.067 17 C -0.190 4.190 18 C -0.069 4.069 19 Cl 0.068 6.932 20 N -0.074 5.074 21 N -0.211 5.211 22 H 0.297 0.703 23 C 0.012 3.988 24 H 0.068 0.932 25 H 0.005 0.995 26 H 0.011 0.989 27 H 0.158 0.842 28 H 0.157 0.843 29 H 0.162 0.838 30 H 0.183 0.817 31 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.427 -16.668 -1.662 16.811 hybrid contribution -0.293 0.342 0.316 0.550 sum 1.133 -16.325 -1.346 16.420 Atomic orbital electron populations 1.70112 1.07672 1.27235 1.53027 1.25876 0.95568 1.02967 0.95580 0.85487 0.79224 0.79497 0.77335 1.18716 1.21030 1.20808 1.21525 0.93493 0.91272 1.48053 0.91931 1.18920 0.93087 0.92359 0.94614 1.20177 0.93365 0.89290 0.93156 0.91706 1.58649 1.18183 1.55644 1.03194 1.20059 1.04642 0.99512 0.90204 1.20946 0.96336 0.94659 0.97631 1.21034 1.00058 0.96274 0.98520 1.20656 0.97155 0.99464 0.89455 1.19738 1.08737 0.97966 0.92588 1.23926 0.99979 0.92599 0.90420 1.98386 1.74728 1.36232 1.83867 1.76413 1.12775 1.00755 1.17416 1.45822 1.51571 1.22210 1.01472 0.70327 1.18826 0.98521 0.94397 0.87057 0.93214 0.99518 0.98865 0.84206 0.84256 0.83790 0.81665 0.82401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.03 13.29 21.45 0.28 -56.75 16 2 C 0.00 -0.20 5.46 84.66 0.46 0.27 16 3 Si 0.96 44.71 29.54 68.60 2.03 46.74 16 4 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 7 C -0.51 -27.87 8.84 25.60 0.23 -27.64 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.05 2.39 4.60 29.85 0.14 2.53 16 10 C 0.15 5.80 2.94 44.17 0.13 5.93 16 11 H 0.06 2.53 8.12 -2.39 -0.02 2.51 16 12 N -0.83 -27.32 8.54 -171.80 -1.47 -28.78 16 13 C -0.14 -4.54 5.03 -20.00 -0.10 -4.65 16 14 C -0.07 -1.98 9.21 22.06 0.20 -1.77 16 15 C -0.14 -2.98 9.97 22.03 0.22 -2.76 16 16 C -0.05 -1.08 10.06 22.27 0.22 -0.86 16 17 C -0.18 -5.39 6.37 -20.23 -0.13 -5.52 16 18 C 0.13 3.93 8.09 86.94 0.70 4.64 16 19 Cl 0.04 0.90 29.33 -2.72 -0.08 0.82 16 20 N -0.25 -8.44 12.55 -45.94 -0.58 -9.01 16 21 N -0.49 -16.72 7.37 -51.53 -0.38 -17.10 16 22 H 0.45 14.56 8.96 -213.47 -1.91 12.65 16 23 C 0.13 4.33 7.03 39.21 0.28 4.60 16 24 H 0.26 14.93 8.31 -92.70 -0.77 14.16 16 25 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 26 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 27 H 0.34 10.55 7.20 -89.70 -0.65 9.90 16 28 H 0.34 9.13 9.06 -89.69 -0.81 8.31 16 29 H 0.14 3.25 6.23 -2.91 -0.02 3.23 16 30 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 31 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -67.22 287.55 -0.01 -67.22 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: -2.17 Total: 22.11 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: 2.35 Total: -25.24 kcal Atomic # 7 Polarization: -109.51 SS G_CDS: -2.14 Total: -111.64 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 17 Polarization: 0.90 SS G_CDS: -0.08 Total: 0.82 kcal Total: -67.22 -0.01 -67.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260190234.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.763 kcal (2) G-P(sol) polarization free energy of solvation -67.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds