Wall clock time and date at job start Mon Mar 30 2020 06:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99950 * 2 1 4 4 H 1.48508 * 109.47130 * 270.00168 * 3 2 1 5 5 H 1.48495 * 109.47075 * 29.99863 * 3 2 1 6 6 H 1.48496 * 109.47207 * 150.00369 * 3 2 1 7 7 C 1.37873 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99641 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00194 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46914 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47050 * 54.99940 * 10 9 7 12 12 N 1.46899 * 109.47163 * 294.99910 * 10 9 7 13 13 C 1.50699 * 109.46866 * 174.99892 * 10 9 7 14 14 C 1.36621 * 120.07614 * 99.72563 * 13 10 9 15 15 C 1.38924 * 120.81459 * 179.73146 * 14 13 10 16 16 C 1.36506 * 120.62478 * 0.56625 * 15 14 13 17 17 C 1.39882 * 119.64112 * 359.71299 * 16 15 14 18 18 C 1.46006 * 134.03848 * 180.02562 * 17 16 15 19 19 Cl 1.73592 * 126.12146 * 359.97438 * 18 17 16 20 20 N 1.30306 * 107.76139 * 180.02562 * 18 17 16 21 21 N 1.39871 * 110.09086 * 359.97438 * 20 18 17 22 22 H 0.96995 * 125.45418 * 180.02562 * 21 20 18 23 23 C 1.37042 * 109.09938 * 0.02562 * 21 20 18 24 24 H 0.97003 * 120.00488 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47549 * 60.00240 * 9 7 2 26 26 H 1.09000 * 109.46862 * 299.99921 * 9 7 2 27 27 H 1.00899 * 110.99492 * 300.00119 * 12 10 9 28 28 H 1.00895 * 110.99738 * 63.95549 * 12 10 9 29 29 H 1.08000 * 119.59549 * 0.02562 * 14 13 10 30 30 H 1.08000 * 119.69208 * 180.30217 * 15 14 13 31 31 H 1.08000 * 120.18331 * 179.69094 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 1 2.9301 -3.5555 0.8395 12 7 3.0074 -3.6533 -1.2576 13 6 1.4960 -4.9637 0.1220 14 6 1.2502 -5.7206 -0.9885 15 6 0.5658 -6.9256 -0.8912 16 6 0.1141 -7.3732 0.3167 17 6 0.3482 -6.6135 1.4676 18 6 0.0189 -6.7828 2.8799 19 17 -0.8448 -8.1179 3.5763 20 7 0.4884 -5.7519 3.5240 21 7 1.1247 -4.8792 2.6352 22 1 1.5527 -4.0431 2.8772 23 6 1.0469 -5.3945 1.3678 24 1 -0.4851 0.8400 0.0004 25 1 0.6240 -2.5568 -0.8902 26 1 0.6247 -2.5570 0.8897 27 1 2.3945 -3.7508 -2.0532 28 1 3.5690 -2.8186 -1.3339 29 1 1.5964 -5.3803 -1.9532 30 1 0.3857 -7.5118 -1.7802 31 1 -0.4216 -8.3086 0.3833 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260190240.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:32 Heat of formation + Delta-G solvation = 68.813666 kcal Electronic energy + Delta-G solvation = -17290.287851 eV Core-core repulsion = 14405.215361 eV Total energy + Delta-G solvation = -2885.072490 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.18808 -37.66369 -36.77937 -35.40240 -32.68467 -31.54699 -29.66927 -29.04682 -28.09607 -24.76718 -22.64981 -22.08466 -21.55213 -19.88429 -17.79764 -16.72703 -16.33623 -15.29889 -15.10435 -15.00351 -14.76037 -14.65393 -13.78929 -13.17932 -12.88705 -12.63111 -12.23776 -12.06054 -11.83169 -11.58934 -11.53191 -11.14352 -11.00573 -10.70246 -10.56819 -10.45840 -10.07102 -9.68600 -9.28316 -8.57136 -8.49718 -8.04935 -7.55367 -6.18111 -4.24376 1.09028 1.46237 1.70413 2.44123 3.12019 3.20063 3.27945 3.29758 3.99085 4.30227 4.59032 4.86073 5.14943 5.17950 5.23936 5.32379 5.54109 5.73592 5.91206 6.01577 6.17526 6.42395 6.53422 6.68223 6.81555 7.00444 7.29355 7.39820 7.44952 7.57474 7.74275 7.88551 8.07836 8.19128 8.82415 9.42136 10.92087 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.026291 B = 0.005163 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.751972 B = 5422.213433 C = 6078.373395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.893 3.107 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.531 4.531 8 H 0.058 0.942 9 C 0.001 3.999 10 C 0.127 3.873 11 H 0.073 0.927 12 N -0.838 5.838 13 C -0.069 4.069 14 C -0.065 4.065 15 C -0.147 4.147 16 C -0.058 4.058 17 C -0.168 4.168 18 C 0.134 3.866 19 Cl 0.011 6.989 20 N -0.234 5.234 21 N -0.482 5.482 22 H 0.450 0.550 23 C 0.147 3.853 24 H 0.263 0.737 25 H 0.020 0.980 26 H 0.017 0.983 27 H 0.331 0.669 28 H 0.349 0.651 29 H 0.134 0.866 30 H 0.125 0.875 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.435 -13.999 0.902 14.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.076 0.924 9 C -0.037 4.037 10 C 0.016 3.984 11 H 0.091 0.909 12 N -0.367 5.367 13 C -0.073 4.073 14 C -0.086 4.086 15 C -0.167 4.167 16 C -0.078 4.078 17 C -0.176 4.176 18 C -0.069 4.069 19 Cl 0.038 6.962 20 N -0.053 5.053 21 N -0.201 5.201 22 H 0.297 0.703 23 C 0.031 3.969 24 H 0.072 0.928 25 H 0.038 0.962 26 H 0.035 0.965 27 H 0.143 0.857 28 H 0.162 0.838 29 H 0.152 0.848 30 H 0.143 0.857 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.686 -14.091 2.412 14.312 hybrid contribution -0.223 1.906 -0.634 2.021 sum 0.463 -12.185 1.778 12.323 Atomic orbital electron populations 1.69966 1.06146 1.26950 1.49573 1.25017 0.94808 0.99382 0.94849 0.86577 0.79830 0.83292 0.78228 1.20535 1.21175 1.19781 1.21123 0.92880 0.90682 1.52230 0.92421 1.19806 0.94296 0.91622 0.98015 1.20428 0.94422 0.90369 0.93214 0.90939 1.59258 1.27804 1.45997 1.03650 1.18997 1.00927 0.98202 0.89210 1.20612 0.96223 0.93485 0.98279 1.20658 1.01362 0.97432 0.97212 1.20176 0.98603 0.98608 0.90428 1.19357 1.08285 0.97958 0.92018 1.23607 1.00486 0.92299 0.90464 1.98374 1.73383 1.40006 1.84413 1.76442 1.11087 1.00841 1.16964 1.45769 1.50525 1.21371 1.02392 0.70254 1.18534 0.98157 0.93155 0.87095 0.92759 0.96158 0.96505 0.85664 0.83753 0.84829 0.85677 0.85739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.56 13.29 55.43 0.74 -24.83 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.53 -13.65 8.55 -34.44 -0.29 -13.95 16 8 H 0.06 1.42 7.15 -52.49 -0.38 1.05 16 9 C 0.00 0.03 4.60 -27.88 -0.13 -0.10 16 10 C 0.13 2.42 3.00 -68.86 -0.21 2.22 16 11 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 12 N -0.84 -14.33 8.67 -5.65 -0.05 -14.38 16 13 C -0.07 -1.21 5.07 -104.83 -0.53 -1.74 16 14 C -0.07 -0.99 9.20 -39.91 -0.37 -1.36 16 15 C -0.15 -1.95 9.97 -39.95 -0.40 -2.34 16 16 C -0.06 -0.79 10.06 -39.59 -0.40 -1.19 16 17 C -0.17 -2.71 6.37 -105.18 -0.67 -3.38 16 18 C 0.13 2.11 8.09 -15.09 -0.12 1.99 16 19 Cl 0.01 0.13 29.33 -51.86 -1.52 -1.39 16 20 N -0.23 -3.98 12.55 34.13 0.43 -3.56 16 21 N -0.48 -8.26 7.37 32.36 0.24 -8.03 16 22 H 0.45 7.18 8.96 -182.78 -1.64 5.55 16 23 C 0.15 2.58 7.04 -84.17 -0.59 1.99 16 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.33 5.33 7.27 -39.29 -0.29 5.04 16 28 H 0.35 6.13 7.90 -39.29 -0.31 5.82 16 29 H 0.13 1.85 6.18 -52.49 -0.32 1.52 16 30 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 31 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 285.78 15.07 4.31 4.31 Total: -1.00 -28.99 285.78 -8.87 -37.86 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -4.18 Total: 10.73 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -3.81 Total: -16.29 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: 1.35 Total: -50.78 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 17 Polarization: 0.13 SS G_CDS: -1.52 Total: -1.39 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.99 -8.87 -37.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260190240.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.675 kcal (2) G-P(sol) polarization free energy of solvation -28.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds