Wall clock time and date at job start Mon Mar 30 2020 06:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99950 * 2 1 4 4 H 1.48508 * 109.47130 * 270.00168 * 3 2 1 5 5 H 1.48495 * 109.47075 * 29.99863 * 3 2 1 6 6 H 1.48496 * 109.47207 * 150.00369 * 3 2 1 7 7 C 1.37873 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99641 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00194 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46914 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47050 * 54.99940 * 10 9 7 12 12 N 1.46899 * 109.47163 * 294.99910 * 10 9 7 13 13 C 1.50699 * 109.46866 * 174.99892 * 10 9 7 14 14 C 1.36621 * 120.07614 * 99.72563 * 13 10 9 15 15 C 1.38924 * 120.81459 * 179.73146 * 14 13 10 16 16 C 1.36506 * 120.62478 * 0.56625 * 15 14 13 17 17 C 1.39882 * 119.64112 * 359.71299 * 16 15 14 18 18 C 1.46006 * 134.03848 * 180.02562 * 17 16 15 19 19 Cl 1.73592 * 126.12146 * 359.97438 * 18 17 16 20 20 N 1.30306 * 107.76139 * 180.02562 * 18 17 16 21 21 N 1.39871 * 110.09086 * 359.97438 * 20 18 17 22 22 H 0.96995 * 125.45418 * 180.02562 * 21 20 18 23 23 C 1.37042 * 109.09938 * 0.02562 * 21 20 18 24 24 H 0.97003 * 120.00488 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47549 * 60.00240 * 9 7 2 26 26 H 1.09000 * 109.46862 * 299.99921 * 9 7 2 27 27 H 1.00899 * 110.99492 * 300.00119 * 12 10 9 28 28 H 1.00895 * 110.99738 * 63.95549 * 12 10 9 29 29 H 1.08000 * 119.59549 * 0.02562 * 14 13 10 30 30 H 1.08000 * 119.69208 * 180.30217 * 15 14 13 31 31 H 1.08000 * 120.18331 * 179.69094 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 1 2.9301 -3.5555 0.8395 12 7 3.0074 -3.6533 -1.2576 13 6 1.4960 -4.9637 0.1220 14 6 1.2502 -5.7206 -0.9885 15 6 0.5658 -6.9256 -0.8912 16 6 0.1141 -7.3732 0.3167 17 6 0.3482 -6.6135 1.4676 18 6 0.0189 -6.7828 2.8799 19 17 -0.8448 -8.1179 3.5763 20 7 0.4884 -5.7519 3.5240 21 7 1.1247 -4.8792 2.6352 22 1 1.5527 -4.0431 2.8772 23 6 1.0469 -5.3945 1.3678 24 1 -0.4851 0.8400 0.0004 25 1 0.6240 -2.5568 -0.8902 26 1 0.6247 -2.5570 0.8897 27 1 2.3945 -3.7508 -2.0532 28 1 3.5690 -2.8186 -1.3339 29 1 1.5964 -5.3803 -1.9532 30 1 0.3857 -7.5118 -1.7802 31 1 -0.4216 -8.3086 0.3833 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260190240.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:31 Heat of formation + Delta-G solvation = 49.541357 kcal Electronic energy + Delta-G solvation = -17291.123561 eV Core-core repulsion = 14405.215361 eV Total energy + Delta-G solvation = -2885.908200 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.41080 -38.96074 -37.88816 -36.85652 -34.60332 -32.85000 -30.91848 -30.28635 -29.88850 -26.44454 -24.11920 -23.34568 -22.89338 -21.32070 -19.18965 -18.43562 -17.68009 -16.67906 -16.55030 -16.40373 -16.18930 -16.01179 -15.04717 -14.60137 -14.57818 -14.22975 -13.75013 -13.43781 -13.12195 -12.93777 -12.85968 -12.68376 -12.58708 -12.27404 -12.05218 -11.89552 -11.73538 -11.18909 -10.94651 -10.63872 -9.72264 -9.50516 -8.84946 -8.24531 -6.37351 -0.11351 0.29764 0.52515 1.21376 1.38099 1.39362 1.49420 1.88696 2.36126 2.81055 3.09051 3.39334 3.57682 3.91825 4.08756 4.11681 4.30631 4.44264 4.57460 4.78609 4.84279 5.02479 5.17828 5.33606 5.44523 5.57231 5.62549 5.72868 5.88826 6.10881 6.15757 6.32542 6.37133 6.70667 6.79668 7.33628 8.85912 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.026291 B = 0.005163 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.751972 B = 5422.213433 C = 6078.373395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.961 3.039 4 H -0.272 1.272 5 H -0.290 1.290 6 H -0.262 1.262 7 C -0.536 4.536 8 H 0.067 0.933 9 C 0.013 3.987 10 C 0.145 3.855 11 H 0.064 0.936 12 N -0.825 5.825 13 C -0.101 4.101 14 C -0.061 4.061 15 C -0.142 4.142 16 C -0.049 4.049 17 C -0.183 4.183 18 C 0.134 3.866 19 Cl 0.040 6.960 20 N -0.257 5.257 21 N -0.494 5.494 22 H 0.448 0.552 23 C 0.126 3.874 24 H 0.262 0.738 25 H -0.007 1.007 26 H -0.015 1.015 27 H 0.339 0.661 28 H 0.347 0.653 29 H 0.147 0.853 30 H 0.166 0.834 31 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.908 -15.496 -0.058 15.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.193 4.193 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.216 1.216 6 H -0.187 1.187 7 C -0.574 4.574 8 H 0.085 0.915 9 C -0.026 4.026 10 C 0.033 3.967 11 H 0.082 0.918 12 N -0.354 5.354 13 C -0.105 4.105 14 C -0.082 4.082 15 C -0.161 4.161 16 C -0.069 4.069 17 C -0.191 4.191 18 C -0.068 4.068 19 Cl 0.068 6.932 20 N -0.076 5.076 21 N -0.212 5.212 22 H 0.295 0.705 23 C 0.010 3.990 24 H 0.071 0.929 25 H 0.011 0.989 26 H 0.003 0.997 27 H 0.152 0.848 28 H 0.160 0.840 29 H 0.164 0.836 30 H 0.183 0.817 31 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.177 -15.608 1.443 15.718 hybrid contribution -0.430 2.238 -0.349 2.305 sum 0.747 -13.370 1.094 13.435 Atomic orbital electron populations 1.70109 1.07914 1.27701 1.51351 1.25903 0.95526 1.03190 0.94672 0.85499 0.78652 0.78730 0.78474 1.19699 1.21551 1.18663 1.21544 0.93502 0.91555 1.50764 0.91460 1.19653 0.94447 0.93374 0.95079 1.20054 0.93148 0.89797 0.93749 0.91795 1.59250 1.27324 1.45592 1.03199 1.18932 1.02978 0.98308 0.90277 1.20939 0.95400 0.93915 0.97944 1.21074 0.99849 0.96646 0.98569 1.20641 0.97492 0.99204 0.89553 1.19682 1.08538 0.97923 0.92973 1.23905 0.99763 0.92534 0.90639 1.98381 1.72550 1.38270 1.84030 1.76393 1.12120 1.01566 1.17500 1.45798 1.51145 1.21609 1.02628 0.70494 1.18808 0.98933 0.94142 0.87157 0.92918 0.98860 0.99660 0.84841 0.83990 0.83562 0.81659 0.82387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.98 13.29 21.45 0.28 -54.69 16 2 C 0.01 0.30 5.46 84.65 0.46 0.77 16 3 Si 0.96 42.46 29.54 68.60 2.03 44.48 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 7 C -0.54 -27.93 8.55 25.60 0.22 -27.71 16 8 H 0.07 3.31 7.15 -2.91 -0.02 3.29 16 9 C 0.01 0.65 4.60 29.85 0.14 0.78 16 10 C 0.14 5.58 3.00 44.17 0.13 5.72 16 11 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 12 N -0.82 -27.67 8.67 -171.80 -1.49 -29.16 16 13 C -0.10 -3.52 5.07 -20.00 -0.10 -3.62 16 14 C -0.06 -1.76 9.20 22.06 0.20 -1.55 16 15 C -0.14 -3.27 9.97 22.03 0.22 -3.05 16 16 C -0.05 -1.19 10.06 22.26 0.22 -0.96 16 17 C -0.18 -5.68 6.37 -20.23 -0.13 -5.81 16 18 C 0.13 4.12 8.09 86.93 0.70 4.82 16 19 Cl 0.04 0.93 29.33 -2.72 -0.08 0.85 16 20 N -0.26 -8.85 12.55 -45.95 -0.58 -9.42 16 21 N -0.49 -17.55 7.37 -51.53 -0.38 -17.93 16 22 H 0.45 15.32 8.96 -213.47 -1.91 13.41 16 23 C 0.13 4.45 7.04 39.21 0.28 4.73 16 24 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 25 H -0.01 -0.38 8.14 -2.39 -0.02 -0.39 16 26 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 27 H 0.34 10.57 7.27 -89.69 -0.65 9.91 16 28 H 0.35 11.93 7.90 -89.70 -0.71 11.22 16 29 H 0.15 3.72 6.18 -2.91 -0.02 3.70 16 30 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 31 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -63.27 285.78 0.06 -63.21 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: -2.07 Total: 28.56 kcal Atomic # 6 Polarization: -28.24 SS G_CDS: 2.35 Total: -25.89 kcal Atomic # 7 Polarization: -109.05 SS G_CDS: -2.16 Total: -111.21 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 17 Polarization: 0.93 SS G_CDS: -0.08 Total: 0.85 kcal Total: -63.27 0.06 -63.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260190240.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.748 kcal (2) G-P(sol) polarization free energy of solvation -63.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds