Wall clock time and date at job start Mon Mar 30 2020 06:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47423 * 240.00398 * 3 2 1 5 5 H 1.48506 * 109.47157 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47427 * 120.00366 * 3 2 1 7 7 C 1.37877 * 120.00174 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00501 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99608 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47131 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47050 * 305.00095 * 10 9 7 12 12 N 1.46902 * 109.46626 * 64.99919 * 10 9 7 13 13 C 1.50697 * 109.47239 * 184.99759 * 10 9 7 14 14 C 1.36498 * 120.18266 * 264.72532 * 13 10 9 15 15 C 1.38932 * 120.62457 * 179.77032 * 14 13 10 16 16 C 1.36622 * 120.81111 * 0.51290 * 15 14 13 17 17 C 1.39250 * 119.85331 * 359.74389 * 16 15 14 18 18 N 1.37045 * 133.84652 * 180.02562 * 17 16 15 19 19 H 0.96999 * 125.44716 * 359.97438 * 18 17 16 20 20 N 1.39868 * 109.10240 * 179.97438 * 18 17 16 21 21 C 1.30301 * 110.08567 * 359.97438 * 20 18 17 22 22 Cl 1.73609 * 126.11793 * 179.97438 * 21 20 18 23 23 C 1.39888 * 120.17562 * 85.00383 * 13 10 9 24 24 H 0.97000 * 119.99683 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47057 * 60.00564 * 9 7 2 26 26 H 1.08992 * 109.47337 * 299.99909 * 9 7 2 27 27 H 1.00895 * 111.00001 * 60.00364 * 12 10 9 28 28 H 1.00905 * 110.99513 * 183.95271 * 12 10 9 29 29 H 1.07999 * 119.69133 * 0.02562 * 14 13 10 30 30 H 1.07995 * 119.59265 * 180.28271 * 15 14 13 31 31 H 1.08006 * 120.07516 * 179.73010 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1031 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 1 2.9287 -3.5549 -0.8441 12 7 3.0093 -3.6544 1.2529 13 6 1.4957 -4.9636 -0.1256 14 6 1.1714 -5.6777 0.9916 15 6 0.4764 -6.8763 0.8885 16 6 0.1120 -7.3711 -0.3317 17 6 0.4338 -6.6673 -1.4894 18 7 0.2177 -6.8868 -2.8248 19 1 -0.2434 -7.6523 -3.2017 20 7 0.7686 -5.8302 -3.5573 21 6 1.3155 -4.9644 -2.7516 22 17 2.1184 -3.4975 -3.2180 23 6 1.1338 -5.4494 -1.3865 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8896 27 1 2.3976 -3.7526 2.0492 28 1 3.7170 -4.3737 1.2496 29 1 1.4540 -5.3054 1.9652 30 1 0.2244 -7.4253 1.7836 31 1 -0.4242 -8.3063 -0.3984 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260197207.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:39 Heat of formation + Delta-G solvation = 78.451792 kcal Electronic energy + Delta-G solvation = -17588.627334 eV Core-core repulsion = 14703.972784 eV Total energy + Delta-G solvation = -2884.654549 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.22942 -37.77607 -36.54586 -35.10393 -32.48399 -31.53254 -29.97132 -28.81378 -28.18016 -24.52553 -22.72579 -22.13897 -21.40231 -19.87884 -17.52062 -16.72088 -16.12629 -15.41861 -15.32945 -15.00354 -14.81071 -14.32347 -13.82239 -13.68830 -12.84572 -12.32918 -12.13422 -11.87424 -11.60714 -11.49554 -11.26891 -11.01793 -10.81125 -10.54650 -10.35196 -10.05098 -9.84951 -9.30466 -9.02838 -8.55933 -8.23436 -7.99727 -7.74313 -5.85535 -3.83709 0.99579 1.59590 1.69475 2.40200 3.04578 3.43519 3.47195 3.50786 3.87611 4.55959 4.61981 4.78486 5.04943 5.12980 5.29630 5.42204 5.50579 5.59670 5.79747 5.98110 6.21392 6.25279 6.51327 6.63202 6.86837 6.97647 7.25509 7.47178 7.60225 7.74589 8.01109 8.13523 8.19187 8.57799 9.21503 9.77508 11.26214 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.022354 B = 0.006967 C = 0.005924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.247348 B = 4018.155827 C = 4725.602274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.052 3.948 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.489 4.489 8 H 0.061 0.939 9 C 0.043 3.957 10 C 0.121 3.879 11 H 0.089 0.911 12 N -0.820 5.820 13 C -0.007 4.007 14 C -0.174 4.174 15 C -0.053 4.053 16 C -0.164 4.164 17 C 0.138 3.862 18 N -0.503 5.503 19 H 0.442 0.558 20 N -0.247 5.247 21 C 0.155 3.845 22 Cl 0.046 6.954 23 C -0.162 4.162 24 H 0.258 0.742 25 H 0.024 0.976 26 H 0.015 0.985 27 H 0.335 0.665 28 H 0.323 0.677 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.271 -15.606 -1.427 15.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.148 4.148 3 Si 0.718 3.282 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.527 4.527 8 H 0.080 0.920 9 C 0.006 3.994 10 C 0.009 3.991 11 H 0.107 0.893 12 N -0.347 5.347 13 C -0.012 4.012 14 C -0.194 4.194 15 C -0.074 4.074 16 C -0.186 4.186 17 C 0.023 3.977 18 N -0.221 5.221 19 H 0.287 0.713 20 N -0.066 5.066 21 C -0.048 4.048 22 Cl 0.073 6.927 23 C -0.171 4.171 24 H 0.067 0.933 25 H 0.042 0.958 26 H 0.033 0.967 27 H 0.149 0.851 28 H 0.134 0.866 29 H 0.145 0.855 30 H 0.146 0.854 31 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.183 -14.860 -2.899 15.186 hybrid contribution -0.193 -0.195 0.624 0.681 sum 0.990 -15.054 -2.275 15.257 Atomic orbital electron populations 1.69961 1.05948 1.26343 1.51950 1.24985 0.94749 0.98977 0.96045 0.86708 0.79515 0.83495 0.78526 1.20497 1.21674 1.20319 1.21058 0.93242 0.89861 1.48588 0.92037 1.19082 0.92627 0.90256 0.97426 1.21047 0.95335 0.89977 0.92731 0.89327 1.58841 1.17738 1.54224 1.03945 1.20807 0.93524 0.96718 0.90137 1.20524 1.03997 0.96446 0.98434 1.20691 0.94962 0.95165 0.96536 1.19664 1.07725 1.01566 0.89621 1.18777 0.97517 0.95500 0.85951 1.45622 1.53009 1.21396 1.02029 0.71331 1.76520 1.13475 0.97277 1.19294 1.23994 0.98415 0.91737 0.90681 1.98477 1.75308 1.26600 1.92266 1.19319 1.08565 0.96660 0.92507 0.93266 0.95779 0.96714 0.85087 0.86597 0.85542 0.85431 0.85810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 2 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 3 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 7 C -0.49 -13.53 8.84 -34.44 -0.30 -13.83 16 8 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 9 C 0.04 1.09 4.60 -27.88 -0.13 0.96 16 10 C 0.12 2.42 2.48 -68.86 -0.17 2.25 16 11 H 0.09 1.83 6.33 -51.93 -0.33 1.50 16 12 N -0.82 -14.62 8.53 -5.65 -0.05 -14.67 16 13 C -0.01 -0.13 5.05 -104.63 -0.53 -0.65 16 14 C -0.17 -2.58 9.22 -39.95 -0.37 -2.94 16 15 C -0.05 -0.65 9.96 -39.91 -0.40 -1.05 16 16 C -0.16 -2.02 10.03 -39.79 -0.40 -2.42 16 17 C 0.14 2.07 7.34 -84.17 -0.62 1.45 16 18 N -0.50 -6.90 7.37 32.36 0.24 -6.66 16 19 H 0.44 4.22 8.96 -182.77 -1.64 2.58 16 20 N -0.25 -4.13 12.55 34.13 0.43 -3.70 16 21 C 0.15 2.81 8.05 -15.09 -0.12 2.68 16 22 Cl 0.05 0.84 27.03 -51.86 -1.40 -0.57 16 23 C -0.16 -2.87 6.15 -105.18 -0.65 -3.52 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.02 0.65 8.02 -51.93 -0.42 0.24 16 26 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.33 5.60 7.21 -39.29 -0.28 5.32 16 28 H 0.32 4.80 9.06 -39.29 -0.36 4.44 16 29 H 0.13 1.68 6.24 -52.49 -0.33 1.35 16 30 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 282.93 15.07 4.26 4.26 Total: -1.00 -32.03 282.93 -8.74 -40.78 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -4.16 Total: 5.59 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -3.78 Total: -15.69 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: 1.35 Total: -51.43 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 17 Polarization: 0.84 SS G_CDS: -1.40 Total: -0.57 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.03 -8.74 -40.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260197207.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.229 kcal (2) G-P(sol) polarization free energy of solvation -32.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds