Wall clock time and date at job start Mon Mar 30 2020 06:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47423 * 240.00398 * 3 2 1 5 5 H 1.48506 * 109.47157 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47427 * 120.00366 * 3 2 1 7 7 C 1.37877 * 120.00174 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00501 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99608 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47131 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47050 * 305.00095 * 10 9 7 12 12 N 1.46902 * 109.46626 * 64.99919 * 10 9 7 13 13 C 1.50697 * 109.47239 * 184.99759 * 10 9 7 14 14 C 1.36498 * 120.18266 * 264.72532 * 13 10 9 15 15 C 1.38932 * 120.62457 * 179.77032 * 14 13 10 16 16 C 1.36622 * 120.81111 * 0.51290 * 15 14 13 17 17 C 1.39250 * 119.85331 * 359.74389 * 16 15 14 18 18 N 1.37045 * 133.84652 * 180.02562 * 17 16 15 19 19 H 0.96999 * 125.44716 * 359.97438 * 18 17 16 20 20 N 1.39868 * 109.10240 * 179.97438 * 18 17 16 21 21 C 1.30301 * 110.08567 * 359.97438 * 20 18 17 22 22 Cl 1.73609 * 126.11793 * 179.97438 * 21 20 18 23 23 C 1.39888 * 120.17562 * 85.00383 * 13 10 9 24 24 H 0.97000 * 119.99683 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47057 * 60.00564 * 9 7 2 26 26 H 1.08992 * 109.47337 * 299.99909 * 9 7 2 27 27 H 1.00895 * 111.00001 * 60.00364 * 12 10 9 28 28 H 1.00905 * 110.99513 * 183.95271 * 12 10 9 29 29 H 1.07999 * 119.69133 * 0.02562 * 14 13 10 30 30 H 1.07995 * 119.59265 * 180.28271 * 15 14 13 31 31 H 1.08006 * 120.07516 * 179.73010 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1031 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 1 2.9287 -3.5549 -0.8441 12 7 3.0093 -3.6544 1.2529 13 6 1.4957 -4.9636 -0.1256 14 6 1.1714 -5.6777 0.9916 15 6 0.4764 -6.8763 0.8885 16 6 0.1120 -7.3711 -0.3317 17 6 0.4338 -6.6673 -1.4894 18 7 0.2177 -6.8868 -2.8248 19 1 -0.2434 -7.6523 -3.2017 20 7 0.7686 -5.8302 -3.5573 21 6 1.3155 -4.9644 -2.7516 22 17 2.1184 -3.4975 -3.2180 23 6 1.1338 -5.4494 -1.3865 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8896 27 1 2.3976 -3.7526 2.0492 28 1 3.7170 -4.3737 1.2496 29 1 1.4540 -5.3054 1.9652 30 1 0.2244 -7.4253 1.7836 31 1 -0.4242 -8.3063 -0.3984 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260197207.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:38 Heat of formation + Delta-G solvation = 55.677732 kcal Electronic energy + Delta-G solvation = -17589.614891 eV Core-core repulsion = 14703.972784 eV Total energy + Delta-G solvation = -2885.642107 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.41386 -39.05164 -37.90843 -36.53370 -34.50736 -32.81942 -31.17280 -30.15441 -29.91603 -26.26863 -24.08380 -23.50182 -22.70403 -21.36964 -18.84305 -18.16817 -17.81247 -16.92252 -16.52304 -16.41864 -16.19020 -16.06662 -15.08279 -14.97900 -14.38232 -14.15652 -13.49609 -13.14038 -13.12163 -13.00172 -12.81293 -12.64369 -12.43717 -12.23735 -12.10982 -11.53795 -11.49948 -11.09992 -10.81159 -10.44426 -9.73679 -9.42910 -8.91659 -8.05276 -6.09774 -0.18456 0.41329 0.45550 1.16293 1.44294 1.46548 1.53880 1.94608 2.50156 2.74402 3.28275 3.39789 3.65565 3.90679 3.96402 4.06203 4.32951 4.44301 4.61620 4.71835 4.86197 5.06518 5.12181 5.43049 5.52917 5.59263 5.77390 5.81105 5.94076 6.18260 6.37075 6.39048 6.56392 6.88206 7.03255 7.55540 9.06305 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.022354 B = 0.006967 C = 0.005924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.247348 B = 4018.155827 C = 4725.602274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.002 4.002 3 Si 0.951 3.049 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.269 1.269 7 C -0.494 4.494 8 H 0.058 0.942 9 C 0.057 3.943 10 C 0.136 3.864 11 H 0.075 0.925 12 N -0.827 5.827 13 C -0.041 4.041 14 C -0.169 4.169 15 C -0.049 4.049 16 C -0.145 4.145 17 C 0.131 3.869 18 N -0.483 5.483 19 H 0.460 0.540 20 N -0.256 5.256 21 C 0.129 3.871 22 Cl 0.026 6.974 23 C -0.190 4.190 24 H 0.257 0.743 25 H -0.006 1.006 26 H -0.013 1.013 27 H 0.341 0.659 28 H 0.342 0.658 29 H 0.139 0.861 30 H 0.172 0.828 31 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.217 -17.770 -0.319 17.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.198 4.198 3 Si 0.777 3.223 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.194 1.194 7 C -0.533 4.533 8 H 0.077 0.923 9 C 0.020 3.980 10 C 0.024 3.976 11 H 0.093 0.907 12 N -0.357 5.357 13 C -0.046 4.046 14 C -0.189 4.189 15 C -0.069 4.069 16 C -0.167 4.167 17 C 0.015 3.985 18 N -0.204 5.204 19 H 0.309 0.691 20 N -0.075 5.075 21 C -0.073 4.073 22 Cl 0.054 6.946 23 C -0.199 4.199 24 H 0.066 0.934 25 H 0.013 0.987 26 H 0.005 0.995 27 H 0.156 0.844 28 H 0.155 0.845 29 H 0.156 0.844 30 H 0.189 0.811 31 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.144 -17.054 -1.799 17.187 hybrid contribution -0.233 0.324 0.306 0.503 sum 0.911 -16.731 -1.493 16.822 Atomic orbital electron populations 1.70095 1.07475 1.27052 1.53358 1.25795 0.95537 1.02562 0.95952 0.85713 0.78335 0.79339 0.78893 1.19797 1.21430 1.19418 1.21383 0.93225 0.91212 1.47462 0.92335 1.18796 0.92842 0.91850 0.94509 1.20483 0.94197 0.89748 0.93176 0.90660 1.58707 1.18197 1.55496 1.03342 1.20552 0.95980 0.96638 0.91423 1.20831 1.03111 0.97036 0.97902 1.21173 0.93372 0.94080 0.98291 1.20229 1.05900 1.02290 0.88273 1.19095 0.97453 0.94971 0.86958 1.45604 1.52074 1.21042 1.01698 0.69058 1.76409 1.13347 0.97821 1.19953 1.24043 0.99862 0.91847 0.91508 1.98452 1.75813 1.27902 1.92402 1.19565 1.09903 0.98213 0.92246 0.93386 0.98728 0.99472 0.84385 0.84485 0.84371 0.81059 0.81420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.93 13.29 21.45 0.28 -57.65 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 3 Si 0.95 45.82 29.54 68.60 2.03 47.85 16 4 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 6 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 7 C -0.49 -28.04 8.84 25.60 0.23 -27.81 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.06 2.99 4.60 29.85 0.14 3.13 16 10 C 0.14 5.55 2.48 44.17 0.11 5.66 16 11 H 0.08 3.23 6.33 -2.39 -0.02 3.22 16 12 N -0.83 -29.30 8.53 -171.79 -1.47 -30.77 16 13 C -0.04 -1.45 5.05 -19.87 -0.10 -1.55 16 14 C -0.17 -4.63 9.22 22.03 0.20 -4.42 16 15 C -0.05 -0.99 9.96 22.06 0.22 -0.77 16 16 C -0.15 -2.92 10.03 22.13 0.22 -2.70 16 17 C 0.13 3.62 7.34 39.21 0.29 3.91 16 18 N -0.48 -12.31 7.37 -51.53 -0.38 -12.69 16 19 H 0.46 7.52 8.96 -213.47 -1.91 5.60 16 20 N -0.26 -8.50 12.55 -45.94 -0.58 -9.07 16 21 C 0.13 4.80 8.05 86.93 0.70 5.50 16 22 Cl 0.03 1.02 27.03 -2.72 -0.07 0.95 16 23 C -0.19 -6.72 6.15 -20.23 -0.12 -6.84 16 24 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 25 H -0.01 -0.32 8.02 -2.39 -0.02 -0.34 16 26 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 27 H 0.34 11.22 7.21 -89.70 -0.65 10.57 16 28 H 0.34 9.85 9.06 -89.69 -0.81 9.04 16 29 H 0.14 3.35 6.24 -2.91 -0.02 3.33 16 30 H 0.17 2.01 8.06 -2.91 -0.02 1.98 16 31 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -71.57 282.93 -0.01 -71.57 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -2.16 Total: 15.38 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: 2.34 Total: -25.57 kcal Atomic # 7 Polarization: -108.04 SS G_CDS: -2.14 Total: -110.18 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Atomic # 17 Polarization: 1.02 SS G_CDS: -0.07 Total: 0.95 kcal Total: -71.57 -0.01 -71.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260197207.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.253 kcal (2) G-P(sol) polarization free energy of solvation -71.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds