Wall clock time and date at job start Mon Mar 30 2020 06:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 C 1.53002 * 109.46919 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47125 * 55.00088 * 10 9 7 12 12 N 1.46904 * 109.47145 * 295.00022 * 10 9 7 13 13 C 1.50697 * 109.47354 * 174.99865 * 10 9 7 14 14 C 1.36505 * 120.18171 * 99.99520 * 13 10 9 15 15 C 1.38921 * 120.63160 * 180.02562 * 14 13 10 16 16 C 1.36636 * 120.80986 * 359.97438 * 15 14 13 17 17 C 1.39246 * 119.84829 * 0.02562 * 16 15 14 18 18 N 1.37045 * 133.84203 * 179.97438 * 17 16 15 19 19 H 0.97001 * 125.45265 * 359.97438 * 18 17 16 20 20 N 1.39881 * 109.09824 * 179.27406 * 18 17 16 21 21 C 1.30304 * 110.08526 * 0.66572 * 20 18 17 22 22 Cl 1.73591 * 126.11642 * 179.43232 * 21 20 18 23 23 C 1.39883 * 120.18425 * 279.72507 * 13 10 9 24 24 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 26 26 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 27 27 H 1.00892 * 111.00190 * 176.04744 * 12 10 9 28 28 H 1.00904 * 110.99623 * 299.99964 * 12 10 9 29 29 H 1.08000 * 119.68814 * 359.97438 * 14 13 10 30 30 H 1.08006 * 119.60042 * 180.02562 * 15 14 13 31 31 H 1.07996 * 120.07154 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 6 2.2450 -3.6621 0.0134 11 1 2.9253 -3.5531 0.8581 12 7 3.0138 -3.6573 -1.2384 13 6 1.4950 -4.9633 0.1373 14 6 1.2589 -5.7274 -0.9690 15 6 0.5681 -6.9282 -0.8656 16 6 0.1108 -7.3707 0.3435 17 6 0.3367 -6.6126 1.4895 18 7 0.0169 -6.7734 2.8124 19 1 -0.4695 -7.5247 3.1863 20 7 0.5180 -5.6886 3.5395 21 6 1.1200 -4.8539 2.7402 22 17 1.8788 -3.3623 3.2014 23 6 1.0418 -5.3977 1.3874 24 1 -0.4851 -0.8400 -0.0004 25 1 0.6205 -2.5547 0.8933 26 1 0.6280 -2.5591 -0.8867 27 1 3.7214 -4.3765 -1.2309 28 1 2.4051 -3.7572 -2.0369 29 1 1.6119 -5.3948 -1.9340 30 1 0.3910 -7.5198 -1.7518 31 1 -0.4252 -8.3058 0.4101 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260197212.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:40 Heat of formation + Delta-G solvation = 75.522685 kcal Electronic energy + Delta-G solvation = -17657.577730 eV Core-core repulsion = 14772.796165 eV Total energy + Delta-G solvation = -2884.781565 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.29711 -37.86691 -36.58624 -35.23752 -32.71102 -31.59290 -30.05222 -28.85927 -27.90471 -24.28286 -22.76758 -22.18203 -21.48224 -20.12007 -17.57111 -16.77364 -16.63425 -15.50510 -15.36885 -15.05071 -14.84846 -14.07226 -13.81951 -13.61066 -13.16004 -12.33447 -12.14139 -11.93825 -11.85136 -11.54337 -11.32624 -10.99229 -10.84934 -10.36874 -10.24887 -10.10625 -9.99779 -9.49890 -8.67082 -8.49994 -8.18278 -8.01236 -7.82386 -6.17779 -3.83490 0.92422 1.51874 1.65592 2.33964 2.99120 3.53900 3.57307 3.73087 3.79763 4.51520 4.67810 4.72381 4.97280 5.05603 5.20926 5.34505 5.48555 5.60454 5.72278 5.89833 6.14255 6.16001 6.41946 6.49818 6.77630 6.87227 7.19286 7.34346 7.41306 7.48636 7.88333 8.08948 8.39433 8.70568 9.06633 9.84878 11.22211 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.022570 B = 0.007085 C = 0.005990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.301569 B = 3950.933971 C = 4673.193055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.009 3.991 3 Si 1.069 2.931 4 H -0.290 1.290 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.568 4.568 8 H 0.056 0.944 9 C 0.029 3.971 10 C 0.130 3.870 11 H 0.090 0.910 12 N -0.819 5.819 13 C -0.011 4.011 14 C -0.176 4.176 15 C -0.053 4.053 16 C -0.162 4.162 17 C 0.138 3.862 18 N -0.503 5.503 19 H 0.442 0.558 20 N -0.246 5.246 21 C 0.153 3.847 22 Cl 0.048 6.952 23 C -0.162 4.162 24 H 0.266 0.734 25 H 0.017 0.983 26 H 0.004 0.996 27 H 0.324 0.676 28 H 0.335 0.665 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.639 -15.834 1.531 15.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.193 4.193 3 Si 0.898 3.102 4 H -0.217 1.217 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.607 4.607 8 H 0.074 0.926 9 C -0.008 4.008 10 C 0.018 3.982 11 H 0.108 0.892 12 N -0.347 5.347 13 C -0.016 4.016 14 C -0.196 4.196 15 C -0.074 4.074 16 C -0.184 4.184 17 C 0.023 3.977 18 N -0.220 5.220 19 H 0.287 0.713 20 N -0.064 5.064 21 C -0.050 4.050 22 Cl 0.076 6.924 23 C -0.171 4.171 24 H 0.076 0.924 25 H 0.035 0.965 26 H 0.022 0.978 27 H 0.136 0.864 28 H 0.149 0.851 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.423 -13.506 2.997 13.907 hybrid contribution -0.347 -2.896 -0.656 2.989 sum 1.076 -16.402 2.341 16.603 Atomic orbital electron populations 1.70750 1.06896 1.30298 1.47948 1.25731 0.96547 1.02466 0.94542 0.83546 0.74655 0.75426 0.76567 1.21701 1.21413 1.21600 1.21897 0.94537 0.90781 1.53456 0.92618 1.19219 0.93284 0.92083 0.96186 1.20837 0.94957 0.89511 0.92871 0.89249 1.58794 1.17702 1.54313 1.03851 1.20827 0.93531 0.96977 0.90217 1.20533 1.04417 0.96127 0.98498 1.20696 0.94712 0.95428 0.96533 1.19682 1.07640 1.01107 0.90017 1.18780 0.97002 0.95664 0.86267 1.45642 1.52138 1.21060 1.03157 0.71277 1.76540 1.13992 0.96641 1.19254 1.24037 0.98405 0.91730 0.90848 1.98488 1.77464 1.24000 1.92414 1.19318 1.08513 0.96387 0.92880 0.92403 0.96523 0.97812 0.86440 0.85104 0.85572 0.85361 0.85714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.44 13.65 55.43 0.76 -27.68 16 2 C 0.01 0.27 5.46 -17.82 -0.10 0.17 16 3 Si 1.07 26.01 29.90 -169.99 -5.08 20.92 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.57 -15.84 8.84 -34.44 -0.30 -16.14 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.73 3.68 -27.88 -0.10 0.63 16 10 C 0.13 2.62 2.36 -68.86 -0.16 2.45 16 11 H 0.09 1.88 6.68 -51.93 -0.35 1.53 16 12 N -0.82 -14.75 8.42 -5.65 -0.05 -14.80 16 13 C -0.01 -0.19 5.07 -104.63 -0.53 -0.72 16 14 C -0.18 -2.57 9.20 -39.95 -0.37 -2.94 16 15 C -0.05 -0.64 9.96 -39.91 -0.40 -1.04 16 16 C -0.16 -1.98 10.03 -39.79 -0.40 -2.38 16 17 C 0.14 2.06 7.33 -84.18 -0.62 1.45 16 18 N -0.50 -6.88 7.37 32.36 0.24 -6.64 16 19 H 0.44 4.21 8.96 -182.76 -1.64 2.57 16 20 N -0.25 -4.13 12.55 34.13 0.43 -3.70 16 21 C 0.15 2.79 8.06 -15.09 -0.12 2.67 16 22 Cl 0.05 0.91 26.26 -51.86 -1.36 -0.45 16 23 C -0.16 -2.88 6.15 -105.18 -0.65 -3.53 16 24 H 0.27 8.23 7.22 -40.82 -0.29 7.93 16 25 H 0.02 0.44 7.16 -51.93 -0.37 0.07 16 26 H 0.00 0.10 8.01 -51.93 -0.42 -0.32 16 27 H 0.32 4.85 9.06 -39.30 -0.36 4.50 16 28 H 0.33 5.66 7.29 -39.29 -0.29 5.37 16 29 H 0.13 1.65 6.20 -52.49 -0.33 1.32 16 30 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 31 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 280.07 15.07 4.22 4.22 Total: -1.00 -32.67 280.07 -8.68 -41.35 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -4.08 Total: 6.16 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -3.75 Total: -19.38 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: 1.38 Total: -52.82 kcal Atomic # 14 Polarization: 26.01 SS G_CDS: -5.08 Total: 20.92 kcal Atomic # 17 Polarization: 0.91 SS G_CDS: -1.36 Total: -0.45 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.67 -8.68 -41.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260197212.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.877 kcal (2) G-P(sol) polarization free energy of solvation -32.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds