Wall clock time and date at job start Mon Mar 30 2020 06:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 C 1.53002 * 109.46919 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47125 * 55.00088 * 10 9 7 12 12 N 1.46904 * 109.47145 * 295.00022 * 10 9 7 13 13 C 1.50697 * 109.47354 * 174.99865 * 10 9 7 14 14 C 1.36505 * 120.18171 * 99.99520 * 13 10 9 15 15 C 1.38921 * 120.63160 * 180.02562 * 14 13 10 16 16 C 1.36636 * 120.80986 * 359.97438 * 15 14 13 17 17 C 1.39246 * 119.84829 * 0.02562 * 16 15 14 18 18 N 1.37045 * 133.84203 * 179.97438 * 17 16 15 19 19 H 0.97001 * 125.45265 * 359.97438 * 18 17 16 20 20 N 1.39881 * 109.09824 * 179.27406 * 18 17 16 21 21 C 1.30304 * 110.08526 * 0.66572 * 20 18 17 22 22 Cl 1.73591 * 126.11642 * 179.43232 * 21 20 18 23 23 C 1.39883 * 120.18425 * 279.72507 * 13 10 9 24 24 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 26 26 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 27 27 H 1.00892 * 111.00190 * 176.04744 * 12 10 9 28 28 H 1.00904 * 110.99623 * 299.99964 * 12 10 9 29 29 H 1.08000 * 119.68814 * 359.97438 * 14 13 10 30 30 H 1.08006 * 119.60042 * 180.02562 * 15 14 13 31 31 H 1.07996 * 120.07154 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 6 2.2450 -3.6621 0.0134 11 1 2.9253 -3.5531 0.8581 12 7 3.0138 -3.6573 -1.2384 13 6 1.4950 -4.9633 0.1373 14 6 1.2589 -5.7274 -0.9690 15 6 0.5681 -6.9282 -0.8656 16 6 0.1108 -7.3707 0.3435 17 6 0.3367 -6.6126 1.4895 18 7 0.0169 -6.7734 2.8124 19 1 -0.4695 -7.5247 3.1863 20 7 0.5180 -5.6886 3.5395 21 6 1.1200 -4.8539 2.7402 22 17 1.8788 -3.3623 3.2014 23 6 1.0418 -5.3977 1.3874 24 1 -0.4851 -0.8400 -0.0004 25 1 0.6205 -2.5547 0.8933 26 1 0.6280 -2.5591 -0.8867 27 1 3.7214 -4.3765 -1.2309 28 1 2.4051 -3.7572 -2.0369 29 1 1.6119 -5.3948 -1.9340 30 1 0.3910 -7.5198 -1.7518 31 1 -0.4252 -8.3058 0.4101 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260197212.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:40 Heat of formation + Delta-G solvation = 52.072937 kcal Electronic energy + Delta-G solvation = -17658.594588 eV Core-core repulsion = 14772.796165 eV Total energy + Delta-G solvation = -2885.798422 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.48264 -39.15248 -37.96908 -36.69947 -34.71838 -32.87683 -31.25014 -30.06644 -29.75143 -26.04527 -24.20388 -23.57491 -22.79120 -21.58180 -18.96065 -18.55173 -17.92839 -16.93373 -16.57648 -16.31447 -16.18642 -15.62294 -15.46824 -15.04929 -14.74551 -13.82890 -13.70579 -13.47899 -13.22674 -12.93563 -12.76185 -12.64932 -12.29076 -12.19167 -11.94670 -11.77739 -11.57486 -10.94211 -10.59329 -10.41419 -9.80346 -9.49662 -8.99344 -8.49701 -6.14976 -0.25444 0.35628 0.39142 1.09606 1.55897 1.65107 1.82105 1.88984 2.63328 2.68466 3.31527 3.32877 3.58916 3.81574 3.87640 3.99182 4.25213 4.37694 4.48611 4.64658 4.73882 4.93966 5.05469 5.29628 5.33838 5.43834 5.64514 5.72556 6.11865 6.16778 6.33289 6.39028 6.44026 6.74246 6.83023 7.61305 8.90366 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.022570 B = 0.007085 C = 0.005990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.301569 B = 3950.933971 C = 4673.193055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.045 4.045 3 Si 1.112 2.888 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.567 4.567 8 H 0.049 0.951 9 C 0.041 3.959 10 C 0.145 3.855 11 H 0.073 0.927 12 N -0.827 5.827 13 C -0.045 4.045 14 C -0.169 4.169 15 C -0.048 4.048 16 C -0.143 4.143 17 C 0.132 3.868 18 N -0.483 5.483 19 H 0.461 0.539 20 N -0.255 5.255 21 C 0.127 3.873 22 Cl 0.027 6.973 23 C -0.191 4.191 24 H 0.251 0.749 25 H -0.005 1.005 26 H -0.020 1.020 27 H 0.343 0.657 28 H 0.341 0.659 29 H 0.139 0.861 30 H 0.174 0.826 31 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.688 -18.194 0.338 18.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.240 4.240 3 Si 0.935 3.065 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.605 4.605 8 H 0.068 0.932 9 C 0.003 3.997 10 C 0.032 3.968 11 H 0.091 0.909 12 N -0.358 5.358 13 C -0.050 4.050 14 C -0.189 4.189 15 C -0.069 4.069 16 C -0.165 4.165 17 C 0.016 3.984 18 N -0.203 5.203 19 H 0.310 0.690 20 N -0.074 5.074 21 C -0.075 4.075 22 Cl 0.054 6.946 23 C -0.200 4.200 24 H 0.060 0.940 25 H 0.013 0.987 26 H -0.002 1.002 27 H 0.157 0.843 28 H 0.156 0.844 29 H 0.157 0.843 30 H 0.191 0.809 31 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 1.482 -15.912 1.809 16.083 hybrid contribution -0.408 -2.341 -0.311 2.396 sum 1.074 -18.253 1.498 18.346 Atomic orbital electron populations 1.70887 1.07907 1.29384 1.50563 1.27124 0.96605 1.06302 0.94005 0.82988 0.74175 0.71829 0.77498 1.20108 1.21490 1.19779 1.22191 0.94338 0.92197 1.51797 0.93249 1.18984 0.93544 0.93350 0.93789 1.20287 0.93834 0.89464 0.93173 0.90887 1.58663 1.18186 1.55632 1.03276 1.20552 0.95996 0.96872 0.91576 1.20847 1.03506 0.96606 0.97916 1.21189 0.93015 0.94443 0.98222 1.20258 1.05859 1.01768 0.88610 1.19103 0.96889 0.95175 0.87256 1.45621 1.51256 1.20617 1.02830 0.68986 1.76424 1.13770 0.97296 1.19933 1.24072 0.99932 0.91731 0.91775 1.98461 1.78004 1.25523 1.92576 1.19563 1.09893 0.97924 0.92610 0.93988 0.98688 1.00224 0.84300 0.84396 0.84290 0.80900 0.81273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.19 13.65 21.45 0.29 -59.90 16 2 C -0.04 -2.63 5.46 84.66 0.46 -2.17 16 3 Si 1.11 52.65 29.90 68.60 2.05 54.71 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.57 -32.37 8.84 25.60 0.23 -32.15 16 8 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 9 C 0.04 2.10 3.68 29.85 0.11 2.21 16 10 C 0.14 5.93 2.36 44.17 0.10 6.03 16 11 H 0.07 3.19 6.68 -2.39 -0.02 3.17 16 12 N -0.83 -29.51 8.42 -171.79 -1.45 -30.96 16 13 C -0.05 -1.58 5.07 -19.87 -0.10 -1.68 16 14 C -0.17 -4.53 9.20 22.03 0.20 -4.33 16 15 C -0.05 -0.95 9.96 22.06 0.22 -0.73 16 16 C -0.14 -2.82 10.03 22.14 0.22 -2.60 16 17 C 0.13 3.61 7.33 39.21 0.29 3.90 16 18 N -0.48 -12.25 7.37 -51.54 -0.38 -12.63 16 19 H 0.46 7.47 8.96 -213.46 -1.91 5.55 16 20 N -0.25 -8.51 12.55 -45.94 -0.58 -9.08 16 21 C 0.13 4.74 8.06 86.94 0.70 5.44 16 22 Cl 0.03 1.05 26.26 -2.72 -0.07 0.98 16 23 C -0.19 -6.73 6.15 -20.23 -0.12 -6.86 16 24 H 0.25 16.22 7.22 -92.71 -0.67 15.56 16 25 H -0.01 -0.28 7.16 -2.39 -0.02 -0.30 16 26 H -0.02 -1.15 8.01 -2.39 -0.02 -1.16 16 27 H 0.34 9.93 9.06 -89.70 -0.81 9.11 16 28 H 0.34 11.29 7.29 -89.69 -0.65 10.64 16 29 H 0.14 3.27 6.20 -2.91 -0.02 3.25 16 30 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 31 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -73.45 280.07 0.11 -73.34 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -2.07 Total: 16.47 kcal Atomic # 6 Polarization: -35.24 SS G_CDS: 2.31 Total: -32.93 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -2.11 Total: -112.57 kcal Atomic # 14 Polarization: 52.65 SS G_CDS: 2.05 Total: 54.71 kcal Atomic # 17 Polarization: 1.05 SS G_CDS: -0.07 Total: 0.98 kcal Total: -73.45 0.11 -73.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260197212.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.415 kcal (2) G-P(sol) polarization free energy of solvation -73.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds