Wall clock time and date at job start Mon Mar 30 2020 06:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 120.00252 * 2 1 4 4 H 1.48498 * 109.47399 * 240.00062 * 3 2 1 5 5 H 1.48499 * 109.46999 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47405 * 119.99634 * 3 2 1 7 7 C 1.37874 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99976 * 173.16582 * 7 2 1 9 9 C 1.50703 * 120.00133 * 353.16908 * 7 2 1 10 10 H 1.09004 * 109.70015 * 335.07846 * 9 7 2 11 11 C 1.53194 * 109.58706 * 214.73117 * 9 7 2 12 12 C 1.53038 * 109.33977 * 185.59392 * 11 9 7 13 13 C 1.53041 * 109.54183 * 61.34384 * 12 11 9 14 14 C 1.53191 * 109.31273 * 298.64002 * 13 12 11 15 15 N 1.46928 * 108.78023 * 54.62847 * 14 13 12 16 16 C 1.34776 * 120.63100 * 126.38708 * 15 14 13 17 17 O 1.21694 * 119.99944 * 174.41705 * 16 15 14 18 18 C 1.46582 * 119.99907 * 354.42057 * 16 15 14 19 19 C 1.36644 * 125.45736 * 137.56053 * 18 16 15 20 20 C 1.37473 * 113.29643 * 179.80129 * 19 18 16 21 21 C 1.33818 * 115.10330 * 0.49021 * 20 19 18 22 22 S 1.70624 * 110.94932 * 359.73272 * 21 20 19 23 23 H 0.96998 * 119.99553 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.49855 * 65.61977 * 11 9 7 25 25 H 1.09000 * 109.49384 * 305.55925 * 11 9 7 26 26 H 1.08996 * 109.46165 * 181.36787 * 12 11 9 27 27 H 1.09009 * 109.46065 * 301.34000 * 12 11 9 28 28 H 1.08999 * 109.49245 * 58.58405 * 13 12 11 29 29 H 1.08992 * 109.50086 * 178.68660 * 13 12 11 30 30 H 1.09002 * 109.58803 * 174.42129 * 14 13 12 31 31 H 1.09002 * 109.58497 * 294.70461 * 14 13 12 32 32 H 1.07998 * 123.35608 * 359.97438 * 19 18 16 33 33 H 1.08006 * 122.45392 * 180.24507 * 20 19 18 34 34 H 1.07995 * 124.52922 * 179.74906 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0788 -1.1975 -0.1108 9 6 1.2590 -2.4945 0.1563 10 1 0.3187 -2.3186 0.6788 11 6 2.1133 -3.4836 0.9556 12 6 1.4134 -4.8441 0.9913 13 6 1.2614 -5.3792 -0.4344 14 6 0.3969 -4.4119 -1.2491 15 7 0.9859 -3.0683 -1.1684 16 6 1.2711 -2.3751 -2.2885 17 8 1.6632 -1.2258 -2.2095 18 6 1.1090 -3.0056 -3.6018 19 6 0.5648 -2.4106 -4.7050 20 6 0.5389 -3.2307 -5.8080 21 6 1.0344 -4.4585 -5.6143 22 16 1.5766 -4.6512 -4.0080 23 1 -0.4849 0.8401 -0.0004 24 1 2.2421 -3.1138 1.9728 25 1 3.0886 -3.5886 0.4804 26 1 2.0077 -5.5428 1.5800 27 1 0.4281 -4.7339 1.4445 28 1 2.2446 -5.4662 -0.8970 29 1 0.7840 -6.3586 -0.4065 30 1 0.3672 -4.7360 -2.2894 31 1 -0.6144 -4.3948 -0.8427 32 1 0.1946 -1.3960 -4.7107 33 1 0.1437 -2.9089 -6.7603 34 1 1.0846 -5.2251 -6.3733 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260217338.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:15 Heat of formation + Delta-G solvation = 12.212231 kcal Electronic energy + Delta-G solvation = -18599.982580 eV Core-core repulsion = 15818.039717 eV Total energy + Delta-G solvation = -2781.942863 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.06696 -37.31325 -35.89016 -32.82251 -31.87986 -30.15408 -29.00189 -25.74607 -24.41072 -23.53597 -21.75810 -20.74787 -18.97503 -18.53830 -17.28972 -16.05981 -15.45978 -15.13252 -14.44596 -14.19825 -13.84443 -13.76879 -13.19517 -12.91149 -12.66211 -12.43824 -12.23340 -11.94382 -11.75377 -11.47764 -10.95966 -10.85147 -10.67318 -10.57289 -10.35487 -10.16748 -9.91466 -9.51153 -9.23101 -8.90883 -8.40036 -8.08928 -7.76059 -7.16209 -5.90305 -3.71760 1.08609 1.85636 2.28439 2.93437 3.45348 3.48825 3.56796 4.14776 4.34916 4.62932 5.20664 5.32573 5.40024 5.44848 5.56238 5.69381 5.79492 5.82800 6.02885 6.06377 6.09080 6.33177 6.34377 6.50616 6.54450 6.57562 6.72034 6.79347 6.87265 6.99004 7.59744 7.97523 8.07143 8.20962 8.87907 9.09466 9.64045 9.76910 11.20025 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.018805 B = 0.009146 C = 0.006661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.590502 B = 3060.770605 C = 4202.656423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.092 3.908 3 Si 0.895 3.105 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.477 4.477 8 H 0.053 0.947 9 C 0.258 3.742 10 H 0.059 0.941 11 C -0.121 4.121 12 C -0.120 4.120 13 C -0.128 4.128 14 C 0.090 3.910 15 N -0.595 5.595 16 C 0.573 3.427 17 O -0.464 6.464 18 C -0.222 4.222 19 C -0.099 4.099 20 C -0.138 4.138 21 C -0.271 4.271 22 S 0.182 5.818 23 H 0.259 0.741 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.145 0.855 33 H 0.135 0.865 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.126 -11.671 -6.044 13.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.112 4.112 3 Si 0.723 3.277 4 H -0.200 1.200 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.515 4.515 8 H 0.072 0.928 9 C 0.161 3.839 10 H 0.077 0.923 11 C -0.160 4.160 12 C -0.158 4.158 13 C -0.167 4.167 14 C -0.035 4.035 15 N -0.330 5.330 16 C 0.355 3.645 17 O -0.336 6.336 18 C -0.343 4.343 19 C -0.130 4.130 20 C -0.170 4.170 21 C -0.407 4.407 22 S 0.448 5.552 23 H 0.068 0.932 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.163 0.837 33 H 0.153 0.847 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.855 -12.096 -5.200 13.194 hybrid contribution -0.387 1.836 -1.274 2.268 sum 0.468 -10.260 -6.474 12.141 Atomic orbital electron populations 1.69922 1.06190 1.26582 1.49458 1.24736 0.94468 0.98955 0.93042 0.86615 0.79692 0.83039 0.78316 1.20049 1.21732 1.20701 1.20713 0.93108 0.89466 1.48199 0.92836 1.19180 0.95817 0.90201 0.78737 0.92306 1.22000 0.99209 0.94126 1.00675 1.21581 1.00679 0.97857 0.95639 1.21863 1.00167 0.97792 0.96833 1.21915 0.96769 0.84934 0.99898 1.49040 1.61423 1.14782 1.07790 1.17134 0.80135 0.85981 0.81264 1.90985 1.42987 1.15256 1.84359 1.26077 1.09464 0.97400 1.01351 1.20681 1.00451 1.01122 0.90784 1.19959 1.03716 0.93445 0.99922 1.25243 1.10043 1.02295 1.03167 1.83117 1.59000 1.11467 1.01580 0.93194 0.91940 0.93217 0.93214 0.92382 0.92194 0.92035 0.91096 0.92405 0.83692 0.84750 0.82462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.20 12.87 55.43 0.71 -25.48 16 2 C 0.09 2.66 3.98 -17.82 -0.07 2.59 16 3 Si 0.89 22.99 29.54 -169.99 -5.02 17.97 16 4 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.48 -13.34 5.64 -34.44 -0.19 -13.53 16 8 H 0.05 1.54 7.82 -52.49 -0.41 1.13 16 9 C 0.26 6.34 2.94 -68.75 -0.20 6.14 16 10 H 0.06 1.60 7.42 -51.93 -0.39 1.21 16 11 C -0.12 -2.45 5.35 -26.61 -0.14 -2.59 16 12 C -0.12 -1.95 5.88 -26.69 -0.16 -2.10 16 13 C -0.13 -1.94 6.08 -26.61 -0.16 -2.11 16 14 C 0.09 1.60 6.03 -3.71 -0.02 1.58 16 15 N -0.60 -13.42 2.97 -168.09 -0.50 -13.92 16 16 C 0.57 13.79 7.42 -12.90 -0.10 13.69 16 17 O -0.46 -13.16 12.93 5.19 0.07 -13.09 16 18 C -0.22 -4.34 5.48 -36.79 -0.20 -4.54 16 19 C -0.10 -1.77 10.22 -40.44 -0.41 -2.19 16 20 C -0.14 -1.99 10.15 -41.41 -0.42 -2.41 16 21 C -0.27 -3.59 10.92 29.18 0.32 -3.27 16 22 S 0.18 2.72 19.98 -107.50 -2.15 0.57 16 23 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.94 8.14 -51.92 -0.42 0.51 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.15 3.88 -29.75 -0.12 1.04 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.15 2.63 8.06 -52.49 -0.42 2.21 16 33 H 0.13 1.57 8.06 -52.48 -0.42 1.14 16 34 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 288.32 15.07 4.34 4.34 Total: -1.00 -31.59 288.32 -8.58 -40.17 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -4.27 Total: -1.80 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -1.76 Total: -8.76 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.21 Total: -39.40 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.07 Total: -13.09 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -2.15 Total: 0.57 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.59 -8.58 -40.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260217338.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.379 kcal (2) G-P(sol) polarization free energy of solvation -31.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds