Wall clock time and date at job start Mon Mar 30 2020 06:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 120.00252 * 2 1 4 4 H 1.48498 * 109.47399 * 240.00062 * 3 2 1 5 5 H 1.48499 * 109.46999 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47405 * 119.99634 * 3 2 1 7 7 C 1.37874 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99976 * 173.16582 * 7 2 1 9 9 C 1.50703 * 120.00133 * 353.16908 * 7 2 1 10 10 H 1.09004 * 109.70015 * 335.07846 * 9 7 2 11 11 C 1.53194 * 109.58706 * 214.73117 * 9 7 2 12 12 C 1.53038 * 109.33977 * 185.59392 * 11 9 7 13 13 C 1.53041 * 109.54183 * 61.34384 * 12 11 9 14 14 C 1.53191 * 109.31273 * 298.64002 * 13 12 11 15 15 N 1.46928 * 108.78023 * 54.62847 * 14 13 12 16 16 C 1.34776 * 120.63100 * 126.38708 * 15 14 13 17 17 O 1.21694 * 119.99944 * 174.41705 * 16 15 14 18 18 C 1.46582 * 119.99907 * 354.42057 * 16 15 14 19 19 C 1.36644 * 125.45736 * 137.56053 * 18 16 15 20 20 C 1.37473 * 113.29643 * 179.80129 * 19 18 16 21 21 C 1.33818 * 115.10330 * 0.49021 * 20 19 18 22 22 S 1.70624 * 110.94932 * 359.73272 * 21 20 19 23 23 H 0.96998 * 119.99553 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.49855 * 65.61977 * 11 9 7 25 25 H 1.09000 * 109.49384 * 305.55925 * 11 9 7 26 26 H 1.08996 * 109.46165 * 181.36787 * 12 11 9 27 27 H 1.09009 * 109.46065 * 301.34000 * 12 11 9 28 28 H 1.08999 * 109.49245 * 58.58405 * 13 12 11 29 29 H 1.08992 * 109.50086 * 178.68660 * 13 12 11 30 30 H 1.09002 * 109.58803 * 174.42129 * 14 13 12 31 31 H 1.09002 * 109.58497 * 294.70461 * 14 13 12 32 32 H 1.07998 * 123.35608 * 359.97438 * 19 18 16 33 33 H 1.08006 * 122.45392 * 180.24507 * 20 19 18 34 34 H 1.07995 * 124.52922 * 179.74906 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0788 -1.1975 -0.1108 9 6 1.2590 -2.4945 0.1563 10 1 0.3187 -2.3186 0.6788 11 6 2.1133 -3.4836 0.9556 12 6 1.4134 -4.8441 0.9913 13 6 1.2614 -5.3792 -0.4344 14 6 0.3969 -4.4119 -1.2491 15 7 0.9859 -3.0683 -1.1684 16 6 1.2711 -2.3751 -2.2885 17 8 1.6632 -1.2258 -2.2095 18 6 1.1090 -3.0056 -3.6018 19 6 0.5648 -2.4106 -4.7050 20 6 0.5389 -3.2307 -5.8080 21 6 1.0344 -4.4585 -5.6143 22 16 1.5766 -4.6512 -4.0080 23 1 -0.4849 0.8401 -0.0004 24 1 2.2421 -3.1138 1.9728 25 1 3.0886 -3.5886 0.4804 26 1 2.0077 -5.5428 1.5800 27 1 0.4281 -4.7339 1.4445 28 1 2.2446 -5.4662 -0.8970 29 1 0.7840 -6.3586 -0.4065 30 1 0.3672 -4.7360 -2.2894 31 1 -0.6144 -4.3948 -0.8427 32 1 0.1946 -1.3960 -4.7107 33 1 0.1437 -2.9089 -6.7603 34 1 1.0846 -5.2251 -6.3733 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260217338.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:14 Heat of formation + Delta-G solvation = -7.898656 kcal Electronic energy + Delta-G solvation = -18600.854653 eV Core-core repulsion = 15818.039717 eV Total energy + Delta-G solvation = -2782.814936 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.77267 -38.65330 -37.53295 -34.83847 -33.52141 -31.91293 -30.35520 -27.54320 -25.99902 -25.05208 -23.38571 -22.23127 -20.47430 -19.89964 -19.03019 -17.97286 -16.89655 -16.79306 -16.27894 -15.82808 -15.41010 -15.17583 -14.70949 -14.53760 -14.21861 -13.94701 -13.75057 -13.53958 -13.29861 -12.94547 -12.84922 -12.66563 -12.46116 -12.17797 -11.83598 -11.60603 -11.48164 -11.37906 -11.17149 -10.84779 -9.92312 -9.66601 -9.26602 -8.95897 -8.07973 -5.90800 -0.21873 0.56211 1.07992 1.33453 1.39928 1.45236 1.67250 2.42552 2.48305 2.65820 3.45363 3.92743 4.03934 4.17050 4.20360 4.30210 4.48933 4.52821 4.62795 4.64495 4.72140 4.98317 5.09640 5.10554 5.20895 5.26104 5.29950 5.36581 5.40799 5.47496 5.64198 5.86138 6.09695 6.31470 6.83721 7.13492 7.58538 7.86802 9.02586 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.018805 B = 0.009146 C = 0.006661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.590502 B = 3060.770605 C = 4202.656423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.047 3.953 3 Si 0.939 3.061 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.480 4.480 8 H 0.034 0.966 9 C 0.257 3.743 10 H 0.025 0.975 11 C -0.115 4.115 12 C -0.114 4.114 13 C -0.122 4.122 14 C 0.084 3.916 15 N -0.601 5.601 16 C 0.561 3.439 17 O -0.529 6.529 18 C -0.282 4.282 19 C -0.097 4.097 20 C -0.150 4.150 21 C -0.241 4.241 22 S 0.239 5.761 23 H 0.254 0.746 24 H 0.059 0.941 25 H 0.043 0.957 26 H 0.083 0.917 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.125 0.875 33 H 0.166 0.834 34 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.412 -15.316 -7.638 17.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.153 4.153 3 Si 0.766 3.234 4 H -0.218 1.218 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.519 4.519 8 H 0.052 0.948 9 C 0.158 3.842 10 H 0.043 0.957 11 C -0.154 4.154 12 C -0.152 4.152 13 C -0.160 4.160 14 C -0.040 4.040 15 N -0.334 5.334 16 C 0.346 3.654 17 O -0.406 6.406 18 C -0.403 4.403 19 C -0.130 4.130 20 C -0.181 4.181 21 C -0.378 4.378 22 S 0.505 5.495 23 H 0.062 0.938 24 H 0.078 0.922 25 H 0.062 0.938 26 H 0.101 0.899 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.123 0.877 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.143 0.857 33 H 0.184 0.816 34 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 1.144 -15.790 -6.776 17.221 hybrid contribution -0.478 2.812 -0.920 2.997 sum 0.666 -12.978 -7.696 15.103 Atomic orbital electron populations 1.70018 1.07103 1.26507 1.52138 1.25279 0.95086 1.01434 0.93506 0.85923 0.78782 0.80619 0.78033 1.21763 1.21208 1.18894 1.20866 0.92310 0.91439 1.47250 0.94759 1.18964 0.94569 0.90695 0.80006 0.95743 1.21865 0.98386 0.95688 0.99445 1.21544 1.00673 0.95753 0.97194 1.21876 1.00152 0.98726 0.95212 1.22218 0.97053 0.82881 1.01856 1.48768 1.61168 1.16627 1.06840 1.17628 0.78967 0.85660 0.83125 1.90921 1.45826 1.17890 1.85970 1.25384 1.13851 1.01476 0.99552 1.20854 0.99474 1.00880 0.91772 1.20109 1.04602 0.93417 0.99942 1.25800 1.06426 1.02521 1.03008 1.82734 1.57709 1.06650 1.02390 0.93764 0.92187 0.93839 0.89882 0.92349 0.91870 0.87675 0.89293 0.92504 0.85683 0.81637 0.77956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.53 12.87 21.45 0.28 -57.26 16 2 C 0.05 2.85 3.98 84.65 0.34 3.18 16 3 Si 0.94 49.45 29.54 68.60 2.03 51.48 16 4 H -0.29 -15.94 7.11 99.48 0.71 -15.23 16 5 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 6 H -0.26 -12.98 7.11 99.48 0.71 -12.27 16 7 C -0.48 -28.36 5.64 25.60 0.14 -28.22 16 8 H 0.03 2.09 7.82 -2.91 -0.02 2.07 16 9 C 0.26 13.13 2.94 44.23 0.13 13.26 16 10 H 0.02 1.41 7.42 -2.39 -0.02 1.39 16 11 C -0.12 -4.65 5.35 30.67 0.16 -4.49 16 12 C -0.11 -3.41 5.88 30.62 0.18 -3.23 16 13 C -0.12 -3.26 6.08 30.67 0.19 -3.07 16 14 C 0.08 2.84 6.03 86.36 0.52 3.36 16 15 N -0.60 -27.68 2.97 -803.94 -2.39 -30.07 16 16 C 0.56 28.09 7.42 86.42 0.64 28.73 16 17 O -0.53 -31.96 12.93 -4.33 -0.06 -32.01 16 18 C -0.28 -11.00 5.48 24.07 0.13 -10.87 16 19 C -0.10 -3.43 10.22 21.72 0.22 -3.21 16 20 C -0.15 -3.82 10.15 21.08 0.21 -3.61 16 21 C -0.24 -5.14 10.92 66.81 0.73 -4.41 16 22 S 0.24 6.28 19.98 -56.49 -1.13 5.15 16 23 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 24 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 25 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 28 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.09 2.67 3.88 -16.49 -0.06 2.61 16 31 H 0.06 1.93 8.14 -2.39 -0.02 1.92 16 32 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 33 H 0.17 3.16 8.06 -2.91 -0.02 3.14 16 34 H 0.20 2.61 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -75.51 288.32 3.37 -72.14 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: 1.04 Total: 3.15 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 3.60 Total: -12.58 kcal Atomic # 7 Polarization: -85.21 SS G_CDS: -2.11 Total: -87.32 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -0.06 Total: -32.01 kcal Atomic # 14 Polarization: 49.45 SS G_CDS: 2.03 Total: 51.48 kcal Atomic # 16 Polarization: 6.28 SS G_CDS: -1.13 Total: 5.15 kcal Total: -75.51 3.37 -72.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260217338.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.241 kcal (2) G-P(sol) polarization free energy of solvation -75.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds