Wall clock time and date at job start Mon Mar 30 2020 06:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00136 * 2 1 4 4 H 1.48498 * 109.46724 * 240.00273 * 3 2 1 5 5 H 1.48510 * 109.46644 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47291 * 119.99429 * 3 2 1 7 7 C 1.37874 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00023 * 176.03100 * 7 2 1 9 9 C 1.50697 * 120.00223 * 356.03911 * 7 2 1 10 10 H 1.09007 * 109.58547 * 51.56946 * 9 7 2 11 11 C 1.53189 * 109.70498 * 171.93844 * 9 7 2 12 12 C 1.53039 * 109.31182 * 174.50711 * 11 9 7 13 13 C 1.53046 * 109.52562 * 298.61346 * 12 11 9 14 14 C 1.53187 * 109.31112 * 61.37520 * 13 12 11 15 15 N 1.46927 * 108.77848 * 305.36275 * 14 13 12 16 16 C 1.34773 * 120.63637 * 233.58940 * 15 14 13 17 17 O 1.21698 * 120.00495 * 171.22092 * 16 15 14 18 18 C 1.46591 * 119.99611 * 351.22977 * 16 15 14 19 19 C 1.36649 * 125.45609 * 165.89955 * 18 16 15 20 20 C 1.37467 * 113.29331 * 179.97438 * 19 18 16 21 21 C 1.33817 * 115.10284 * 359.97438 * 20 19 18 22 22 S 1.70617 * 110.95431 * 359.72393 * 21 20 19 23 23 H 0.96999 * 120.00365 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.51074 * 54.55075 * 11 9 7 25 25 H 1.09000 * 109.48831 * 294.45193 * 11 9 7 26 26 H 1.08999 * 109.45961 * 178.60331 * 12 11 9 27 27 H 1.08996 * 109.46734 * 58.62936 * 12 11 9 28 28 H 1.09001 * 109.49632 * 181.32345 * 13 12 11 29 29 H 1.09002 * 109.49939 * 301.39167 * 13 12 11 30 30 H 1.09001 * 109.58869 * 65.15152 * 14 13 12 31 31 H 1.08999 * 109.58919 * 185.43594 * 14 13 12 32 32 H 1.07995 * 123.35287 * 359.96886 * 19 18 16 33 33 H 1.07999 * 122.44713 * 179.97438 * 20 19 18 34 34 H 1.08000 * 124.52359 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0825 -1.1952 -0.0642 9 6 1.2537 -2.4975 0.0913 10 1 0.4714 -2.5222 -0.6674 11 6 2.2195 -3.6662 -0.1284 12 6 1.4782 -4.9853 0.1007 13 6 0.9708 -5.0430 1.5434 14 6 -0.0091 -3.8900 1.7823 15 7 0.6507 -2.6268 1.4249 16 6 0.7017 -1.6060 2.3034 17 8 1.3842 -0.6280 2.0610 18 6 -0.0649 -1.6739 3.5510 19 6 0.1049 -0.8544 4.6312 20 6 -0.7503 -1.1390 5.6692 21 6 -1.5923 -2.1554 5.4486 22 16 -1.3565 -2.8166 3.8936 23 1 -0.4851 0.8400 -0.0004 24 1 3.0499 -3.5890 0.5733 25 1 2.6010 -3.6357 -1.1490 26 1 2.1567 -5.8191 -0.0792 27 1 0.6330 -5.0507 -0.5844 28 1 0.4633 -5.9927 1.7128 29 1 1.8132 -4.9532 2.2293 30 1 -0.8944 -4.0282 1.1616 31 1 -0.2991 -3.8686 2.8328 32 1 0.8379 -0.0621 4.6661 33 1 -0.7431 -0.5829 6.5950 34 1 -2.3262 -2.5073 6.1585 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260217373.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:16 Heat of formation + Delta-G solvation = 31.143125 kcal Electronic energy + Delta-G solvation = -18828.723999 eV Core-core repulsion = 16047.602041 eV Total energy + Delta-G solvation = -2781.121957 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.06221 -37.24302 -35.81930 -32.79541 -31.86902 -30.17076 -28.84482 -25.77253 -24.28940 -23.52210 -21.87046 -20.68101 -19.10000 -18.35467 -17.21101 -15.97076 -15.33390 -14.97191 -14.36288 -14.29985 -14.19217 -13.73721 -13.05347 -12.85127 -12.45692 -12.40443 -12.13891 -12.04294 -11.79771 -11.51028 -11.10129 -10.75439 -10.60659 -10.47529 -10.30935 -10.16343 -9.71752 -9.69621 -9.06976 -8.95216 -8.22754 -7.95808 -7.43647 -6.97031 -5.88393 -3.72270 1.18417 2.05094 2.44080 3.02228 3.48577 3.52886 3.62626 4.27215 4.47978 4.72067 5.27400 5.34520 5.40955 5.47884 5.60858 5.80039 5.84702 5.95834 5.98447 6.01083 6.08214 6.28897 6.44838 6.49287 6.52160 6.67555 6.75433 6.84182 6.85484 6.94317 7.56096 8.03083 8.09573 8.23885 8.96867 9.07871 9.76891 9.82688 11.21684 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.016904 B = 0.010817 C = 0.007196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.025375 B = 2587.809396 C = 3890.158525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.128 3.872 3 Si 0.901 3.099 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.274 1.274 7 C -0.508 4.508 8 H 0.056 0.944 9 C 0.271 3.729 10 H 0.043 0.957 11 C -0.123 4.123 12 C -0.118 4.118 13 C -0.125 4.125 14 C 0.097 3.903 15 N -0.594 5.594 16 C 0.585 3.415 17 O -0.466 6.466 18 C -0.222 4.222 19 C -0.097 4.097 20 C -0.142 4.142 21 C -0.288 4.288 22 S 0.192 5.808 23 H 0.258 0.742 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.144 0.856 33 H 0.130 0.870 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.951 -8.857 6.965 11.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.077 4.077 3 Si 0.730 3.270 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.545 4.545 8 H 0.074 0.926 9 C 0.173 3.827 10 H 0.061 0.939 11 C -0.162 4.162 12 C -0.156 4.156 13 C -0.164 4.164 14 C -0.030 4.030 15 N -0.328 5.328 16 C 0.370 3.630 17 O -0.340 6.340 18 C -0.344 4.344 19 C -0.129 4.129 20 C -0.174 4.174 21 C -0.424 4.424 22 S 0.460 5.540 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.162 0.838 33 H 0.147 0.853 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.430 -9.367 6.056 11.670 hybrid contribution 0.678 2.060 1.316 2.537 sum -2.753 -7.307 7.372 10.739 Atomic orbital electron populations 1.69927 1.06253 1.26686 1.49941 1.24646 0.94465 0.98833 0.89760 0.86565 0.79601 0.83004 0.77869 1.21280 1.22014 1.19972 1.20767 0.92905 0.89618 1.51221 0.92606 1.18932 0.91304 0.92949 0.79528 0.93950 1.21978 0.99122 0.94365 1.00723 1.21555 0.99851 0.98362 0.95839 1.21825 0.99290 0.97252 0.97984 1.21917 0.95626 0.86679 0.98796 1.48617 1.57222 1.11040 1.15916 1.16925 0.81533 0.83708 0.80882 1.90849 1.39667 1.32505 1.70973 1.26250 1.03102 1.02820 1.02180 1.20657 1.00567 0.99807 0.91833 1.19907 0.97807 0.99288 1.00403 1.25678 1.06486 1.04247 1.06032 1.83348 1.30982 1.32040 1.07667 0.93212 0.92835 0.92138 0.93102 0.92398 0.91976 0.91980 0.92245 0.91396 0.83793 0.85260 0.82969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 12.03 55.43 0.67 -25.58 16 2 C 0.13 3.68 2.97 -17.82 -0.05 3.62 16 3 Si 0.90 23.46 28.79 -169.99 -4.89 18.56 16 4 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 6 H -0.27 -7.32 7.11 56.52 0.40 -6.92 16 7 C -0.51 -14.17 6.82 -34.44 -0.23 -14.41 16 8 H 0.06 1.57 7.76 -52.49 -0.41 1.17 16 9 C 0.27 6.61 2.65 -68.75 -0.18 6.43 16 10 H 0.04 1.13 8.07 -51.93 -0.42 0.71 16 11 C -0.12 -2.46 5.32 -26.61 -0.14 -2.60 16 12 C -0.12 -1.90 5.88 -26.69 -0.16 -2.05 16 13 C -0.12 -1.91 6.08 -26.61 -0.16 -2.07 16 14 C 0.10 1.72 5.49 -3.71 -0.02 1.70 16 15 N -0.59 -13.57 2.97 -168.10 -0.50 -14.07 16 16 C 0.59 14.47 6.68 -12.89 -0.09 14.38 16 17 O -0.47 -13.19 10.61 5.19 0.06 -13.13 16 18 C -0.22 -4.63 6.13 -36.79 -0.23 -4.85 16 19 C -0.10 -1.85 10.04 -40.44 -0.41 -2.26 16 20 C -0.14 -2.24 10.15 -41.41 -0.42 -2.66 16 21 C -0.29 -4.23 10.92 29.18 0.32 -3.92 16 22 S 0.19 3.11 18.54 -107.50 -1.99 1.11 16 23 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 24 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 1.14 3.24 -18.89 -0.06 1.08 16 32 H 0.14 2.75 8.06 -52.49 -0.42 2.33 16 33 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 34 H 0.15 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 281.95 15.07 4.25 4.25 Total: -1.00 -31.31 281.95 -8.44 -39.74 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -4.25 Total: -2.20 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -1.77 Total: -8.68 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.17 Total: -39.66 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.06 Total: -13.13 kcal Atomic # 14 Polarization: 23.46 SS G_CDS: -4.89 Total: 18.56 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -1.99 Total: 1.11 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.31 -8.44 -39.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260217373.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.885 kcal (2) G-P(sol) polarization free energy of solvation -31.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds