Wall clock time and date at job start Mon Mar 30 2020 06:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00136 * 2 1 4 4 H 1.48498 * 109.46724 * 240.00273 * 3 2 1 5 5 H 1.48510 * 109.46644 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47291 * 119.99429 * 3 2 1 7 7 C 1.37874 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00023 * 176.03100 * 7 2 1 9 9 C 1.50697 * 120.00223 * 356.03911 * 7 2 1 10 10 H 1.09007 * 109.58547 * 51.56946 * 9 7 2 11 11 C 1.53189 * 109.70498 * 171.93844 * 9 7 2 12 12 C 1.53039 * 109.31182 * 174.50711 * 11 9 7 13 13 C 1.53046 * 109.52562 * 298.61346 * 12 11 9 14 14 C 1.53187 * 109.31112 * 61.37520 * 13 12 11 15 15 N 1.46927 * 108.77848 * 305.36275 * 14 13 12 16 16 C 1.34773 * 120.63637 * 233.58940 * 15 14 13 17 17 O 1.21698 * 120.00495 * 171.22092 * 16 15 14 18 18 C 1.46591 * 119.99611 * 351.22977 * 16 15 14 19 19 C 1.36649 * 125.45609 * 165.89955 * 18 16 15 20 20 C 1.37467 * 113.29331 * 179.97438 * 19 18 16 21 21 C 1.33817 * 115.10284 * 359.97438 * 20 19 18 22 22 S 1.70617 * 110.95431 * 359.72393 * 21 20 19 23 23 H 0.96999 * 120.00365 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.51074 * 54.55075 * 11 9 7 25 25 H 1.09000 * 109.48831 * 294.45193 * 11 9 7 26 26 H 1.08999 * 109.45961 * 178.60331 * 12 11 9 27 27 H 1.08996 * 109.46734 * 58.62936 * 12 11 9 28 28 H 1.09001 * 109.49632 * 181.32345 * 13 12 11 29 29 H 1.09002 * 109.49939 * 301.39167 * 13 12 11 30 30 H 1.09001 * 109.58869 * 65.15152 * 14 13 12 31 31 H 1.08999 * 109.58919 * 185.43594 * 14 13 12 32 32 H 1.07995 * 123.35287 * 359.96886 * 19 18 16 33 33 H 1.07999 * 122.44713 * 179.97438 * 20 19 18 34 34 H 1.08000 * 124.52359 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0825 -1.1952 -0.0642 9 6 1.2537 -2.4975 0.0913 10 1 0.4714 -2.5222 -0.6674 11 6 2.2195 -3.6662 -0.1284 12 6 1.4782 -4.9853 0.1007 13 6 0.9708 -5.0430 1.5434 14 6 -0.0091 -3.8900 1.7823 15 7 0.6507 -2.6268 1.4249 16 6 0.7017 -1.6060 2.3034 17 8 1.3842 -0.6280 2.0610 18 6 -0.0649 -1.6739 3.5510 19 6 0.1049 -0.8544 4.6312 20 6 -0.7503 -1.1390 5.6692 21 6 -1.5923 -2.1554 5.4486 22 16 -1.3565 -2.8166 3.8936 23 1 -0.4851 0.8400 -0.0004 24 1 3.0499 -3.5890 0.5733 25 1 2.6010 -3.6357 -1.1490 26 1 2.1567 -5.8191 -0.0792 27 1 0.6330 -5.0507 -0.5844 28 1 0.4633 -5.9927 1.7128 29 1 1.8132 -4.9532 2.2293 30 1 -0.8944 -4.0282 1.1616 31 1 -0.2991 -3.8686 2.8328 32 1 0.8379 -0.0621 4.6661 33 1 -0.7431 -0.5829 6.5950 34 1 -2.3262 -2.5073 6.1585 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260217373.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:16 Heat of formation + Delta-G solvation = 11.306647 kcal Electronic energy + Delta-G solvation = -18829.584173 eV Core-core repulsion = 16047.602041 eV Total energy + Delta-G solvation = -2781.982132 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.77881 -38.64670 -37.45205 -34.77866 -33.51400 -31.93317 -30.26241 -27.56108 -25.94097 -25.02854 -23.49655 -22.20778 -20.64378 -19.76448 -18.92044 -17.94138 -16.79704 -16.60198 -16.28224 -15.88350 -15.79415 -15.23928 -14.56286 -14.46961 -14.18783 -13.86726 -13.77144 -13.51009 -13.44560 -13.07001 -12.72612 -12.63822 -12.38985 -12.29434 -11.85851 -11.68933 -11.55523 -11.16304 -10.97650 -10.83146 -9.70468 -9.39873 -9.25063 -8.81868 -8.06604 -5.89933 -0.22262 0.66933 1.12805 1.33682 1.40662 1.48320 1.67046 2.49147 2.60186 2.78924 3.58222 3.94521 4.06141 4.16624 4.21155 4.30075 4.50181 4.52169 4.59975 4.64538 4.67946 4.96254 5.07113 5.12459 5.20104 5.24157 5.28989 5.37877 5.41074 5.51035 5.65332 5.89827 6.15940 6.34601 6.86540 7.21346 7.64127 8.00614 9.02882 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.016904 B = 0.010817 C = 0.007196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.025375 B = 2587.809396 C = 3890.158525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.097 3.903 3 Si 0.939 3.061 4 H -0.272 1.272 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.525 4.525 8 H 0.039 0.961 9 C 0.270 3.730 10 H 0.014 0.986 11 C -0.117 4.117 12 C -0.112 4.112 13 C -0.120 4.120 14 C 0.088 3.912 15 N -0.600 5.600 16 C 0.572 3.428 17 O -0.524 6.524 18 C -0.285 4.285 19 C -0.094 4.094 20 C -0.154 4.154 21 C -0.261 4.261 22 S 0.245 5.755 23 H 0.251 0.749 24 H 0.040 0.960 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.107 0.893 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.127 0.873 33 H 0.161 0.839 34 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.480 -11.386 8.856 15.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.105 4.105 3 Si 0.767 3.233 4 H -0.197 1.197 5 H -0.219 1.219 6 H -0.216 1.216 7 C -0.562 4.562 8 H 0.058 0.942 9 C 0.170 3.830 10 H 0.031 0.969 11 C -0.155 4.155 12 C -0.150 4.150 13 C -0.158 4.158 14 C -0.037 4.037 15 N -0.333 5.333 16 C 0.358 3.642 17 O -0.401 6.401 18 C -0.405 4.405 19 C -0.128 4.128 20 C -0.185 4.185 21 C -0.398 4.398 22 S 0.513 5.487 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.080 0.920 26 H 0.101 0.899 27 H 0.082 0.918 28 H 0.125 0.875 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.145 0.855 33 H 0.179 0.821 34 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -4.962 -11.941 7.932 15.170 hybrid contribution 1.086 2.771 0.865 3.099 sum -3.875 -9.170 8.797 13.285 Atomic orbital electron populations 1.70002 1.07028 1.26320 1.52048 1.25071 0.94919 1.00821 0.89691 0.85963 0.78804 0.80998 0.77516 1.19747 1.21852 1.21618 1.20965 0.92318 0.91589 1.51307 0.94245 1.18715 0.91066 0.93384 0.79810 0.96857 1.21853 0.98039 0.95166 1.00489 1.21523 1.00224 0.96599 0.96613 1.21846 0.98796 0.97951 0.97198 1.22244 0.96365 0.85163 0.99910 1.48382 1.57183 1.12638 1.15102 1.17365 0.81435 0.83271 0.82089 1.90776 1.42025 1.33950 1.73394 1.25686 1.06662 1.06895 1.01279 1.20849 1.00543 0.98833 0.92540 1.20078 0.97390 1.00319 1.00671 1.26185 1.05647 1.02448 1.05480 1.82890 1.27992 1.29729 1.08130 0.94020 0.94119 0.91957 0.89898 0.91797 0.87507 0.92467 0.91548 0.89950 0.85476 0.82142 0.78626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.33 12.03 21.45 0.26 -56.07 16 2 C 0.10 5.81 2.97 84.65 0.25 6.06 16 3 Si 0.94 50.20 28.79 68.60 1.98 52.17 16 4 H -0.27 -13.68 7.11 99.48 0.71 -12.97 16 5 H -0.29 -15.36 7.11 99.48 0.71 -14.66 16 6 H -0.29 -16.06 7.11 99.48 0.71 -15.35 16 7 C -0.52 -30.78 6.82 25.60 0.17 -30.60 16 8 H 0.04 2.35 7.76 -2.91 -0.02 2.33 16 9 C 0.27 13.62 2.65 44.23 0.12 13.73 16 10 H 0.01 0.76 8.07 -2.38 -0.02 0.74 16 11 C -0.12 -4.68 5.32 30.67 0.16 -4.51 16 12 C -0.11 -3.30 5.88 30.62 0.18 -3.12 16 13 C -0.12 -3.28 6.08 30.67 0.19 -3.09 16 14 C 0.09 3.00 5.49 86.36 0.47 3.47 16 15 N -0.60 -27.89 2.97 -803.96 -2.39 -30.28 16 16 C 0.57 29.22 6.68 86.42 0.58 29.80 16 17 O -0.52 -31.27 10.61 -4.34 -0.05 -31.31 16 18 C -0.28 -11.82 6.13 24.08 0.15 -11.67 16 19 C -0.09 -3.57 10.04 21.72 0.22 -3.35 16 20 C -0.15 -4.37 10.15 21.08 0.21 -4.16 16 21 C -0.26 -6.43 10.92 66.81 0.73 -5.70 16 22 S 0.24 7.16 18.54 -56.49 -1.05 6.12 16 23 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 24 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 26 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.08 2.56 3.24 -23.39 -0.08 2.48 16 32 H 0.13 5.08 8.06 -2.91 -0.02 5.06 16 33 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 34 H 0.20 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -73.33 281.95 3.21 -70.11 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: 1.03 Total: 2.40 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: 3.43 Total: -13.14 kcal Atomic # 7 Polarization: -84.22 SS G_CDS: -2.13 Total: -86.35 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -0.05 Total: -31.31 kcal Atomic # 14 Polarization: 50.20 SS G_CDS: 1.98 Total: 52.17 kcal Atomic # 16 Polarization: 7.16 SS G_CDS: -1.05 Total: 6.12 kcal Total: -73.33 3.21 -70.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260217373.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.418 kcal (2) G-P(sol) polarization free energy of solvation -73.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds