Wall clock time and date at job start Mon Mar 30 2020 06:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99903 * 2 1 4 4 H 1.48502 * 109.47061 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47145 * 299.99524 * 3 2 1 6 6 H 1.48497 * 109.47197 * 60.00000 * 3 2 1 7 7 C 1.37874 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00317 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47334 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.46735 * 304.99785 * 10 9 7 12 12 N 1.46896 * 109.47118 * 64.99794 * 10 9 7 13 13 C 1.50701 * 109.47067 * 184.99925 * 10 9 7 14 14 C 1.37899 * 119.87334 * 264.99732 * 13 10 9 15 15 C 1.38364 * 119.69280 * 179.97438 * 14 13 10 16 16 C 1.37665 * 120.37984 * 359.97438 * 15 14 13 17 17 C 1.40032 * 120.64419 * 0.02562 * 16 15 14 18 18 O 1.34497 * 127.96336 * 180.02562 * 17 16 15 19 19 C 1.32220 * 117.12887 * 179.97438 * 18 17 16 20 20 O 1.21626 * 125.07291 * 179.97438 * 19 18 17 21 21 S 1.75781 * 109.84523 * 359.97438 * 19 18 17 22 22 C 1.38718 * 118.57855 * 359.97438 * 17 16 15 23 23 H 0.96997 * 120.00055 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46872 * 59.99443 * 9 7 2 25 25 H 1.09004 * 109.46397 * 300.00071 * 9 7 2 26 26 H 1.00903 * 111.00219 * 296.04960 * 12 10 9 27 27 H 1.00901 * 111.00256 * 59.99682 * 12 10 9 28 28 H 1.07996 * 120.15432 * 0.02858 * 14 13 10 29 29 H 1.08002 * 119.81164 * 180.02562 * 15 14 13 30 30 H 1.08000 * 119.67750 * 179.74531 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 1 2.9300 -3.5556 -0.8396 12 7 3.0074 -3.6534 1.2576 13 6 1.4960 -4.9638 -0.1220 14 6 1.1648 -5.6762 1.0113 15 6 0.4764 -6.8705 0.8934 16 6 0.1208 -7.3496 -0.3473 17 6 0.4494 -6.6384 -1.5080 18 8 0.1774 -6.9659 -2.7838 19 6 0.5909 -6.1310 -3.7219 20 8 0.4242 -6.2842 -4.9169 21 16 1.4176 -4.7664 -2.9840 22 6 1.1397 -5.4420 -1.3802 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6240 -2.5566 0.8904 26 1 3.5690 -2.8186 1.3339 27 1 2.3946 -3.7507 2.0532 28 1 1.4408 -5.3031 1.9865 29 1 0.2157 -7.4299 1.7797 30 1 -0.4128 -8.2852 -0.4265 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260228310.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:24 Heat of formation + Delta-G solvation = -33.981701 kcal Electronic energy + Delta-G solvation = -17333.132623 eV Core-core repulsion = 14413.353547 eV Total energy + Delta-G solvation = -2919.779076 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.99107 -39.16847 -37.72823 -35.47445 -32.63011 -30.98849 -29.99274 -28.17225 -25.93223 -24.79940 -22.89376 -22.11342 -20.82448 -18.76071 -17.70467 -17.24629 -16.81983 -16.73174 -15.87491 -15.01498 -14.73064 -14.63155 -13.95352 -13.65276 -13.34833 -13.09662 -12.87322 -12.34285 -12.09931 -11.93107 -11.60327 -11.23412 -11.00831 -10.67616 -10.53323 -10.26981 -10.15489 -10.02857 -9.30975 -8.62319 -8.53429 -8.14310 -7.84528 -6.17885 -4.23509 0.82650 0.90360 1.05537 1.55799 1.78102 2.28103 3.20783 3.29594 3.31967 3.52518 4.29382 4.38494 4.89976 5.04102 5.15218 5.17961 5.21309 5.44489 5.67142 5.79546 6.03963 6.28683 6.41868 6.45773 6.57621 6.70274 6.95006 7.28499 7.39231 7.73138 7.80538 8.01759 8.15769 8.82164 9.42689 10.92628 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.021849 B = 0.006299 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.191297 B = 4444.207966 C = 5268.365026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.893 3.107 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.002 3.998 10 C 0.118 3.882 11 H 0.083 0.917 12 N -0.838 5.838 13 C 0.022 3.978 14 C -0.109 4.109 15 C -0.075 4.075 16 C -0.112 4.112 17 C 0.088 3.912 18 O -0.256 6.256 19 C 0.458 3.542 20 O -0.420 6.420 21 S 0.052 5.948 22 C -0.186 4.186 23 H 0.262 0.738 24 H 0.024 0.976 25 H 0.020 0.980 26 H 0.352 0.648 27 H 0.331 0.669 28 H 0.143 0.857 29 H 0.142 0.858 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.454 -12.574 2.067 12.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.037 4.037 10 C 0.006 3.994 11 H 0.101 0.899 12 N -0.367 5.367 13 C 0.018 3.982 14 C -0.129 4.129 15 C -0.095 4.095 16 C -0.132 4.132 17 C 0.038 3.962 18 O -0.168 6.168 19 C 0.192 3.808 20 O -0.309 6.309 21 S 0.292 5.708 22 C -0.300 4.300 23 H 0.072 0.928 24 H 0.042 0.958 25 H 0.039 0.961 26 H 0.167 0.833 27 H 0.143 0.857 28 H 0.160 0.840 29 H 0.159 0.841 30 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.071 -12.255 0.538 12.440 hybrid contribution -0.827 0.912 0.566 1.355 sum 1.244 -11.343 1.104 11.464 Atomic orbital electron populations 1.69967 1.06119 1.26866 1.49618 1.25000 0.94835 0.99381 0.94804 0.86514 0.80111 0.83556 0.77724 1.19589 1.20869 1.20956 1.21106 0.92915 0.90487 1.52183 0.92326 1.19802 0.94236 0.91311 0.98313 1.20689 0.94984 0.89975 0.93732 0.89873 1.59280 1.27699 1.46350 1.03412 1.19602 0.93805 0.95820 0.88997 1.21001 0.98557 0.94648 0.98729 1.20963 0.96407 0.95957 0.96174 1.20213 1.04139 1.00926 0.87942 1.18948 1.00396 0.94937 0.81917 1.83124 1.69093 1.49804 1.14760 1.24755 0.81806 0.85855 0.88362 1.91006 1.56545 1.73260 1.10069 1.86768 1.63368 1.24246 0.96385 1.22389 1.09981 0.98844 0.98777 0.92795 0.95750 0.96136 0.83345 0.85675 0.83979 0.84065 0.84397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.32 13.29 55.43 0.74 -24.58 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.53 -13.59 8.55 -34.44 -0.29 -13.88 16 8 H 0.06 1.45 7.15 -52.49 -0.38 1.08 16 9 C 0.00 0.04 4.60 -27.88 -0.13 -0.09 16 10 C 0.12 2.21 2.81 -68.87 -0.19 2.02 16 11 H 0.08 1.65 7.78 -51.93 -0.40 1.24 16 12 N -0.84 -13.80 8.79 -5.65 -0.05 -13.85 16 13 C 0.02 0.37 5.08 -104.37 -0.53 -0.16 16 14 C -0.11 -1.47 9.27 -39.66 -0.37 -1.84 16 15 C -0.08 -0.83 10.01 -39.74 -0.40 -1.22 16 16 C -0.11 -1.34 10.06 -39.12 -0.39 -1.73 16 17 C 0.09 1.32 7.06 -38.73 -0.27 1.05 16 18 O -0.26 -4.06 10.05 -14.15 -0.14 -4.20 16 19 C 0.46 7.71 8.92 101.05 0.90 8.61 16 20 O -0.42 -7.77 18.05 -19.17 -0.35 -8.11 16 21 S 0.05 0.88 22.81 -107.50 -2.45 -1.57 16 22 C -0.19 -3.09 6.27 -39.03 -0.24 -3.33 16 23 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 24 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.35 6.02 7.90 -39.29 -0.31 5.71 16 27 H 0.33 4.98 7.20 -39.29 -0.28 4.70 16 28 H 0.14 1.70 6.28 -52.49 -0.33 1.37 16 29 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 278.94 15.07 4.20 4.20 Total: -1.00 -29.28 278.94 -7.62 -36.90 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -2.53 Total: 4.65 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -2.02 Total: -8.99 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.69 Total: -38.43 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -0.49 Total: -12.31 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.45 Total: -1.57 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.28 -7.62 -36.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260228310.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.916 kcal (2) G-P(sol) polarization free energy of solvation -29.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds