Wall clock time and date at job start Mon Mar 30 2020 06:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99903 * 2 1 4 4 H 1.48502 * 109.47061 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47145 * 299.99524 * 3 2 1 6 6 H 1.48497 * 109.47197 * 60.00000 * 3 2 1 7 7 C 1.37874 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00317 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47334 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.46735 * 304.99785 * 10 9 7 12 12 N 1.46896 * 109.47118 * 64.99794 * 10 9 7 13 13 C 1.50701 * 109.47067 * 184.99925 * 10 9 7 14 14 C 1.37899 * 119.87334 * 264.99732 * 13 10 9 15 15 C 1.38364 * 119.69280 * 179.97438 * 14 13 10 16 16 C 1.37665 * 120.37984 * 359.97438 * 15 14 13 17 17 C 1.40032 * 120.64419 * 0.02562 * 16 15 14 18 18 O 1.34497 * 127.96336 * 180.02562 * 17 16 15 19 19 C 1.32220 * 117.12887 * 179.97438 * 18 17 16 20 20 O 1.21626 * 125.07291 * 179.97438 * 19 18 17 21 21 S 1.75781 * 109.84523 * 359.97438 * 19 18 17 22 22 C 1.38718 * 118.57855 * 359.97438 * 17 16 15 23 23 H 0.96997 * 120.00055 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46872 * 59.99443 * 9 7 2 25 25 H 1.09004 * 109.46397 * 300.00071 * 9 7 2 26 26 H 1.00903 * 111.00219 * 296.04960 * 12 10 9 27 27 H 1.00901 * 111.00256 * 59.99682 * 12 10 9 28 28 H 1.07996 * 120.15432 * 0.02858 * 14 13 10 29 29 H 1.08002 * 119.81164 * 180.02562 * 15 14 13 30 30 H 1.08000 * 119.67750 * 179.74531 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 1 2.9300 -3.5556 -0.8396 12 7 3.0074 -3.6534 1.2576 13 6 1.4960 -4.9638 -0.1220 14 6 1.1648 -5.6762 1.0113 15 6 0.4764 -6.8705 0.8934 16 6 0.1208 -7.3496 -0.3473 17 6 0.4494 -6.6384 -1.5080 18 8 0.1774 -6.9659 -2.7838 19 6 0.5909 -6.1310 -3.7219 20 8 0.4242 -6.2842 -4.9169 21 16 1.4176 -4.7664 -2.9840 22 6 1.1397 -5.4420 -1.3802 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6240 -2.5566 0.8904 26 1 3.5690 -2.8186 1.3339 27 1 2.3946 -3.7507 2.0532 28 1 1.4408 -5.3031 1.9865 29 1 0.2157 -7.4299 1.7797 30 1 -0.4128 -8.2852 -0.4265 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260228310.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:23 Heat of formation + Delta-G solvation = -52.284809 kcal Electronic energy + Delta-G solvation = -17333.926306 eV Core-core repulsion = 14413.353547 eV Total energy + Delta-G solvation = -2920.572759 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.22111 -40.41323 -39.07026 -36.92468 -34.55399 -32.12705 -31.18207 -29.94726 -27.29577 -26.30475 -24.40010 -23.28795 -22.30053 -20.07574 -19.06436 -18.56553 -18.47994 -17.99251 -17.23511 -16.63555 -16.31096 -15.89750 -15.14077 -14.98718 -14.73250 -14.52008 -14.34010 -14.02906 -13.56327 -13.40660 -12.91611 -12.76656 -12.67762 -12.34030 -12.00675 -11.89762 -11.62535 -11.33579 -11.20099 -10.63025 -9.78243 -9.48143 -9.21442 -8.23723 -6.35268 -0.49492 -0.26784 -0.05715 0.32014 0.51705 1.06720 1.37972 1.40773 1.51607 2.36677 2.46866 3.10350 3.18526 3.80876 3.94887 4.01693 4.15042 4.31682 4.35883 4.66725 4.78208 4.86542 5.20861 5.30797 5.34453 5.39100 5.40819 5.55508 5.72585 5.83270 6.11821 6.31251 6.68285 6.80354 7.34990 8.87310 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.021849 B = 0.006299 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.191297 B = 4444.207966 C = 5268.365026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.959 3.041 4 H -0.259 1.259 5 H -0.286 1.286 6 H -0.279 1.279 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.013 3.987 10 C 0.134 3.866 11 H 0.066 0.934 12 N -0.823 5.823 13 C -0.009 4.009 14 C -0.106 4.106 15 C -0.056 4.056 16 C -0.095 4.095 17 C 0.069 3.931 18 O -0.251 6.251 19 C 0.466 3.534 20 O -0.443 6.443 21 S 0.020 5.980 22 C -0.202 4.202 23 H 0.262 0.738 24 H -0.010 1.010 25 H 0.001 0.999 26 H 0.349 0.651 27 H 0.341 0.659 28 H 0.159 0.841 29 H 0.193 0.807 30 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.753 -14.184 4.046 14.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.784 3.216 4 H -0.183 1.183 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.573 4.573 8 H 0.083 0.917 9 C -0.026 4.026 10 C 0.021 3.979 11 H 0.084 0.916 12 N -0.353 5.353 13 C -0.013 4.013 14 C -0.126 4.126 15 C -0.075 4.075 16 C -0.114 4.114 17 C 0.020 3.980 18 O -0.163 6.163 19 C 0.202 3.798 20 O -0.333 6.333 21 S 0.260 5.740 22 C -0.316 4.316 23 H 0.071 0.929 24 H 0.008 0.992 25 H 0.019 0.981 26 H 0.163 0.837 27 H 0.155 0.845 28 H 0.176 0.824 29 H 0.210 0.790 30 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.387 -13.883 2.546 14.315 hybrid contribution -0.950 1.318 0.056 1.626 sum 1.437 -12.565 2.602 12.912 Atomic orbital electron populations 1.70095 1.07754 1.27644 1.51266 1.25864 0.95583 1.03059 0.94687 0.85482 0.79356 0.79246 0.77481 1.18300 1.21221 1.20429 1.21529 0.93444 0.91556 1.50809 0.91653 1.19634 0.94429 0.92956 0.95581 1.20278 0.93640 0.89816 0.94159 0.91616 1.59264 1.27220 1.45871 1.02935 1.19489 0.95842 0.95822 0.90196 1.21352 0.97821 0.95212 0.98189 1.21529 0.93833 0.94621 0.97522 1.20837 1.02374 1.01463 0.86760 1.19430 1.01240 0.95111 0.82232 1.83105 1.68835 1.49225 1.15143 1.24598 0.81385 0.85612 0.88209 1.90985 1.57554 1.73860 1.10909 1.86805 1.63792 1.25084 0.98336 1.22463 1.11359 0.99739 0.98020 0.92870 0.99197 0.98073 0.83721 0.84510 0.82356 0.78956 0.80571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.18 13.29 21.45 0.28 -53.89 16 2 C 0.01 0.37 5.46 84.65 0.46 0.83 16 3 Si 0.96 42.46 29.54 68.60 2.03 44.49 16 4 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.54 -27.91 8.55 25.60 0.22 -27.69 16 8 H 0.07 3.24 7.15 -2.91 -0.02 3.22 16 9 C 0.01 0.61 4.60 29.85 0.14 0.75 16 10 C 0.13 5.05 2.81 44.17 0.12 5.17 16 11 H 0.07 2.69 7.78 -2.39 -0.02 2.67 16 12 N -0.82 -26.29 8.79 -171.80 -1.51 -27.80 16 13 C -0.01 -0.29 5.08 -19.70 -0.10 -0.39 16 14 C -0.11 -2.53 9.27 22.22 0.21 -2.33 16 15 C -0.06 -0.95 10.01 22.16 0.22 -0.72 16 16 C -0.09 -1.85 10.06 22.57 0.23 -1.62 16 17 C 0.07 1.96 7.06 22.82 0.16 2.12 16 18 O -0.25 -7.79 10.05 37.20 0.37 -7.42 16 19 C 0.47 16.03 8.92 113.37 1.01 17.04 16 20 O -0.44 -16.74 18.05 19.24 0.35 -16.40 16 21 S 0.02 0.70 22.81 -56.49 -1.29 -0.59 16 22 C -0.20 -6.69 6.27 22.62 0.14 -6.55 16 23 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 24 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 25 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 26 H 0.35 11.64 7.90 -89.69 -0.71 10.94 16 27 H 0.34 9.71 7.20 -89.69 -0.65 9.06 16 28 H 0.16 3.22 6.28 -2.91 -0.02 3.20 16 29 H 0.19 1.38 8.06 -2.91 -0.02 1.36 16 30 H 0.18 2.13 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -65.64 278.94 2.90 -62.74 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -0.15 Total: 12.24 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: 2.81 Total: -13.38 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -1.22 Total: -81.69 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: 0.72 Total: -23.81 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -1.29 Total: -0.59 kcal Total: -65.64 2.90 -62.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260228310.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.454 kcal (2) G-P(sol) polarization free energy of solvation -65.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds