Wall clock time and date at job start Mon Mar 30 2020 06:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00204 * 2 1 4 4 H 1.48495 * 109.47267 * 270.00098 * 3 2 1 5 5 H 1.48497 * 109.46897 * 30.00179 * 3 2 1 6 6 H 1.48503 * 109.46900 * 149.99893 * 3 2 1 7 7 C 1.37887 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99527 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99805 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46797 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47097 * 55.00579 * 10 9 7 12 12 N 1.46897 * 109.47261 * 295.00101 * 10 9 7 13 13 C 1.50703 * 109.46857 * 175.00160 * 10 9 7 14 14 C 1.37905 * 119.87361 * 100.00204 * 13 10 9 15 15 C 1.38362 * 119.69356 * 180.02562 * 14 13 10 16 16 C 1.37668 * 120.37877 * 0.02562 * 15 14 13 17 17 C 1.40030 * 120.64612 * 0.27622 * 16 15 14 18 18 O 1.34498 * 127.96358 * 180.35906 * 17 16 15 19 19 C 1.32221 * 117.12755 * 179.62783 * 18 17 16 20 20 O 1.21624 * 125.07367 * 179.74382 * 19 18 17 21 21 S 1.75779 * 109.84464 * 359.72526 * 19 18 17 22 22 C 1.38729 * 118.57460 * 359.45356 * 17 16 15 23 23 H 0.96997 * 119.99616 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47206 * 60.00010 * 9 7 2 25 25 H 1.08992 * 109.47410 * 300.00223 * 9 7 2 26 26 H 1.00895 * 111.00206 * 176.04611 * 12 10 9 27 27 H 1.00902 * 111.00074 * 300.00509 * 12 10 9 28 28 H 1.07997 * 120.15552 * 0.02562 * 14 13 10 29 29 H 1.07999 * 119.81493 * 180.02562 * 15 14 13 30 30 H 1.08002 * 119.67335 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0046 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0015 11 1 2.9299 -3.5550 0.8427 12 7 3.0074 -3.6546 -1.2543 13 6 1.4958 -4.9637 0.1264 14 6 1.2550 -5.7281 -0.9958 15 6 0.5662 -6.9222 -0.8769 16 6 0.1207 -7.3493 0.3537 17 6 0.3514 -6.5820 1.5021 18 8 -0.0089 -6.8585 2.7681 19 6 0.3280 -5.9794 3.6965 20 8 0.0727 -6.0816 4.8812 21 16 1.2005 -4.6414 2.9627 22 6 1.0479 -5.3891 1.3742 23 1 -0.4849 0.8401 -0.0004 24 1 0.6240 -2.5575 -0.8880 25 1 0.6247 -2.5563 0.8919 26 1 3.7150 -4.3737 -1.2522 27 1 2.3945 -3.7526 -2.0499 28 1 1.6025 -5.3963 -1.9631 29 1 0.3769 -7.5226 -1.7544 30 1 -0.4162 -8.2830 0.4333 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260228315.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:25 Heat of formation + Delta-G solvation = -48.206465 kcal Electronic energy + Delta-G solvation = -17350.953701 eV Core-core repulsion = 14430.557792 eV Total energy + Delta-G solvation = -2920.395908 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.25336 -40.48824 -39.11631 -36.79894 -34.55613 -32.17298 -31.06213 -30.22867 -27.22881 -26.30221 -24.38407 -23.27278 -22.25435 -20.13207 -18.91905 -18.57348 -18.39415 -18.04269 -17.13160 -16.91585 -16.39584 -15.90571 -15.22265 -15.16757 -14.91005 -14.69244 -14.25482 -13.81957 -13.53380 -13.21161 -12.86658 -12.79458 -12.52597 -12.35086 -12.09577 -11.65237 -11.53755 -11.35815 -11.21352 -10.50937 -9.74456 -9.50975 -9.29667 -8.12685 -6.18449 -0.51100 -0.32060 -0.11291 0.30880 0.47370 1.04082 1.43093 1.43616 1.54373 2.37038 2.47307 3.18338 3.21436 3.73647 3.88358 3.95322 4.07407 4.23211 4.38348 4.58709 4.72275 4.88922 5.09322 5.26195 5.32313 5.39571 5.46114 5.63740 5.77775 5.85380 6.26365 6.44729 6.81817 6.94959 7.48174 8.98838 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.021490 B = 0.006425 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.601052 B = 4356.845103 C = 5227.748274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.957 3.043 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.506 4.506 8 H 0.061 0.939 9 C 0.046 3.954 10 C 0.142 3.858 11 H 0.068 0.932 12 N -0.825 5.825 13 C -0.050 4.050 14 C -0.121 4.121 15 C -0.052 4.052 16 C -0.095 4.095 17 C 0.071 3.929 18 O -0.253 6.253 19 C 0.465 3.535 20 O -0.442 6.442 21 S 0.024 5.976 22 C -0.198 4.198 23 H 0.259 0.741 24 H -0.003 1.003 25 H -0.004 1.004 26 H 0.347 0.653 27 H 0.346 0.654 28 H 0.160 0.840 29 H 0.194 0.806 30 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.330 -16.736 -3.757 17.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.199 4.199 3 Si 0.783 3.217 4 H -0.199 1.199 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.545 4.545 8 H 0.079 0.921 9 C 0.009 3.991 10 C 0.029 3.971 11 H 0.086 0.914 12 N -0.356 5.356 13 C -0.056 4.056 14 C -0.141 4.141 15 C -0.071 4.071 16 C -0.115 4.115 17 C 0.021 3.979 18 O -0.164 6.164 19 C 0.200 3.800 20 O -0.333 6.333 21 S 0.264 5.736 22 C -0.312 4.312 23 H 0.068 0.932 24 H 0.015 0.985 25 H 0.015 0.985 26 H 0.161 0.839 27 H 0.162 0.838 28 H 0.178 0.822 29 H 0.211 0.789 30 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.744 -14.961 -2.346 15.391 hybrid contribution -0.775 -0.584 -0.033 0.971 sum 1.969 -15.545 -2.379 15.849 Atomic orbital electron populations 1.70088 1.07515 1.27282 1.52834 1.25840 0.95610 1.02825 0.95594 0.85567 0.78624 0.79280 0.78264 1.19941 1.21419 1.19191 1.21446 0.93419 0.91289 1.48305 0.92124 1.18920 0.93095 0.91933 0.95182 1.20421 0.93837 0.89341 0.93518 0.91377 1.58583 1.18181 1.55930 1.02918 1.20706 0.96897 0.97597 0.90428 1.21396 0.99694 0.95066 0.97909 1.21501 0.93229 0.95029 0.97350 1.20852 1.02561 1.00906 0.87151 1.19512 1.00076 0.95618 0.82646 1.83110 1.68875 1.48232 1.16228 1.24658 0.82044 0.85208 0.88060 1.90987 1.56171 1.74478 1.11643 1.86955 1.62816 1.24166 0.99647 1.22507 1.10854 0.99216 0.98659 0.93192 0.98463 0.98546 0.83889 0.83798 0.82228 0.78915 0.80640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.40 13.29 21.45 0.28 -56.12 16 2 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 3 Si 0.96 44.78 29.54 68.60 2.03 46.80 16 4 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.51 -27.92 8.84 25.60 0.23 -27.69 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.05 2.28 4.60 29.85 0.14 2.42 16 10 C 0.14 5.26 2.70 44.17 0.12 5.38 16 11 H 0.07 2.73 7.98 -2.39 -0.02 2.71 16 12 N -0.82 -25.63 8.42 -171.80 -1.45 -27.07 16 13 C -0.05 -1.51 5.10 -19.70 -0.10 -1.61 16 14 C -0.12 -2.55 9.25 22.22 0.21 -2.34 16 15 C -0.05 -0.77 10.01 22.16 0.22 -0.55 16 16 C -0.10 -1.73 10.06 22.57 0.23 -1.50 16 17 C 0.07 1.94 7.06 22.82 0.16 2.10 16 18 O -0.25 -7.68 10.05 37.18 0.37 -7.31 16 19 C 0.46 15.82 8.92 113.37 1.01 16.83 16 20 O -0.44 -16.68 18.05 19.24 0.35 -16.33 16 21 S 0.02 0.84 22.92 -56.49 -1.29 -0.46 16 22 C -0.20 -6.32 6.27 22.63 0.14 -6.18 16 23 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 24 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 25 H 0.00 -0.20 8.12 -2.39 -0.02 -0.22 16 26 H 0.35 8.30 9.05 -89.70 -0.81 7.49 16 27 H 0.35 9.65 7.28 -89.69 -0.65 9.00 16 28 H 0.16 2.65 6.24 -2.91 -0.02 2.63 16 29 H 0.19 1.02 8.06 -2.91 -0.02 1.00 16 30 H 0.18 1.95 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -70.12 280.82 2.84 -67.28 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -0.26 Total: 6.01 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: 2.81 Total: -12.81 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -1.16 Total: -83.19 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: 0.72 Total: -23.63 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -1.29 Total: -0.46 kcal Total: -70.12 2.84 -67.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260228315.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.071 kcal (2) G-P(sol) polarization free energy of solvation -70.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds