Wall clock time and date at job start Mon Mar 30 2020 06:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00065 * 2 1 4 4 H 1.48498 * 109.47230 * 269.99982 * 3 2 1 5 5 H 1.48498 * 109.47250 * 29.99780 * 3 2 1 6 6 H 1.48494 * 109.47254 * 150.00296 * 3 2 1 7 7 C 1.37876 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00072 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99952 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46750 * 299.99978 * 9 7 2 11 11 N 1.46900 * 109.46879 * 60.00065 * 9 7 2 12 12 C 1.50694 * 109.46897 * 179.97438 * 9 7 2 13 13 C 1.38105 * 120.04410 * 264.99792 * 12 9 7 14 14 C 1.38279 * 120.08281 * 179.70567 * 13 12 9 15 15 C 1.38323 * 120.15818 * 0.04549 * 14 13 12 16 16 C 1.38057 * 120.08648 * 359.97261 * 15 14 13 17 17 C 1.38955 * 120.03903 * 84.72464 * 12 9 7 18 18 S 1.76202 * 120.08188 * 0.25233 * 17 12 9 19 19 C 1.81396 * 103.00112 * 180.02562 * 18 17 12 20 20 C 1.54040 * 113.81594 * 271.18481 * 19 18 17 21 21 O 1.44169 * 85.51907 * 223.19845 * 20 19 18 22 22 C 1.44175 * 93.34229 * 24.19148 * 21 20 19 23 23 H 0.97007 * 119.99671 * 0.02562 * 1 2 3 24 24 H 1.00890 * 111.00329 * 59.99894 * 11 9 7 25 25 H 1.00906 * 110.99213 * 183.95931 * 11 9 7 26 26 H 1.08004 * 119.95424 * 359.72708 * 13 12 9 27 27 H 1.07998 * 119.91845 * 180.02562 * 14 13 12 28 28 H 1.08003 * 119.95351 * 179.97438 * 15 14 13 29 29 H 1.07994 * 120.04422 * 180.02562 * 16 15 14 30 30 H 1.09001 * 113.00470 * 43.16969 * 19 18 17 31 31 H 1.09002 * 113.86252 * 337.34617 * 20 19 18 32 32 H 1.08999 * 113.86452 * 109.04478 * 20 19 18 33 33 H 1.08998 * 113.86788 * 221.65893 * 22 21 20 34 34 H 1.08999 * 113.98410 * 89.96719 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6240 -2.5574 0.8880 11 7 0.4069 -2.5761 -1.2015 12 6 2.2302 -3.6445 -0.0027 13 6 2.6003 -4.2368 -1.1942 14 6 3.5035 -5.2838 -1.1966 15 6 4.0388 -5.7426 -0.0065 16 6 3.6733 -5.1558 1.1885 17 6 2.7663 -4.1024 1.1947 18 16 2.2976 -3.3497 2.7173 19 6 3.2500 -4.2853 3.9453 20 6 2.5254 -5.5389 4.4710 21 8 2.9941 -5.1264 5.7705 22 6 3.1158 -3.7436 5.3810 23 1 -0.4850 0.8401 -0.0004 24 1 0.9651 -2.5241 -2.0403 25 1 -0.1571 -3.4128 -1.1937 26 1 2.1840 -3.8813 -2.1252 27 1 3.7914 -5.7447 -2.1299 28 1 4.7437 -6.5609 -0.0122 29 1 4.0919 -5.5142 2.1172 30 1 4.2799 -4.4665 3.6377 31 1 1.4417 -5.5006 4.3605 32 1 2.9583 -6.4768 4.1233 33 1 4.0169 -3.2577 5.7550 34 1 2.2135 -3.1553 5.5477 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260240007.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:23 Heat of formation + Delta-G solvation = 23.539484 kcal Electronic energy + Delta-G solvation = -17680.820851 eV Core-core repulsion = 14899.369175 eV Total energy + Delta-G solvation = -2781.451676 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.14985 -38.78036 -34.63965 -31.70596 -30.84226 -29.77423 -29.10620 -26.66393 -26.02560 -23.13877 -22.23749 -21.09623 -19.85658 -17.38658 -16.87254 -16.44401 -16.24375 -15.74926 -15.19890 -14.78227 -14.39099 -13.95742 -13.48528 -13.34405 -12.97909 -12.83138 -12.61623 -12.24243 -11.80445 -11.57922 -11.21887 -11.04642 -10.81455 -10.59497 -10.42686 -9.95296 -9.85103 -9.55199 -9.27342 -9.19013 -8.43140 -8.15606 -7.14990 -6.84962 -5.86103 -4.00217 1.68454 1.86916 1.93748 2.82808 3.34866 3.41703 3.45489 3.57277 4.05464 4.19850 4.52289 4.81529 5.03115 5.21962 5.26522 5.31142 5.37470 5.39524 5.52244 5.70555 5.80750 5.90802 5.96574 6.01859 6.19579 6.29175 6.50464 6.75359 6.85150 6.95181 7.41276 7.46411 7.91777 8.16638 8.60196 8.96634 9.13120 9.67369 11.18115 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.016340 B = 0.007641 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.139787 B = 3663.492001 C = 4778.586947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.086 3.914 3 Si 0.882 3.118 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.052 0.948 9 C 0.253 3.747 10 H 0.057 0.943 11 N -0.809 5.809 12 C -0.053 4.053 13 C -0.116 4.116 14 C -0.125 4.125 15 C -0.130 4.130 16 C -0.136 4.136 17 C -0.090 4.090 18 S -0.046 6.046 19 C -0.182 4.182 20 C 0.051 3.949 21 O -0.380 6.380 22 C 0.069 3.931 23 H 0.256 0.744 24 H 0.318 0.682 25 H 0.299 0.701 26 H 0.121 0.879 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.746 -10.526 4.552 12.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.121 4.121 3 Si 0.710 3.290 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.071 0.929 9 C 0.143 3.857 10 H 0.074 0.926 11 N -0.336 5.336 12 C -0.061 4.061 13 C -0.136 4.136 14 C -0.146 4.146 15 C -0.150 4.150 16 C -0.160 4.160 17 C -0.204 4.204 18 S 0.200 5.800 19 C -0.311 4.311 20 C -0.028 4.028 21 O -0.299 6.299 22 C -0.009 4.009 23 H 0.065 0.935 24 H 0.131 0.869 25 H 0.109 0.891 26 H 0.139 0.861 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.135 0.865 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.499 -8.900 5.402 11.342 hybrid contribution 2.116 -0.932 -0.887 2.476 sum 6.615 -9.833 4.515 12.682 Atomic orbital electron populations 1.70101 1.05617 1.25665 1.46715 1.24893 0.94604 0.98389 0.94189 0.86772 0.80123 0.84092 0.78004 1.20818 1.21255 1.19934 1.20663 0.92063 0.88971 1.54307 0.92940 1.18263 0.87568 0.88776 0.91136 0.92566 1.59169 1.28018 1.42067 1.04309 1.21608 0.97550 0.96594 0.90304 1.20972 0.98434 0.96355 0.97887 1.21045 0.98278 0.97784 0.97469 1.20776 1.01117 1.00628 0.92448 1.21019 0.99339 0.97526 0.98155 1.21607 1.01767 0.99589 0.97399 1.86295 1.54614 1.44525 0.94542 1.27006 1.04559 1.00022 0.99560 1.24349 0.99747 0.97204 0.81513 1.89671 1.86462 1.20993 1.32756 1.23731 1.03020 0.85377 0.88733 0.93457 0.86876 0.89084 0.86077 0.86815 0.86860 0.87011 0.86488 0.88733 0.89060 0.88233 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.34 12.77 55.43 0.71 -23.63 16 2 C 0.09 2.37 5.39 -17.82 -0.10 2.28 16 3 Si 0.88 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.04 8.69 -34.44 -0.30 -14.34 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.25 6.11 2.31 -70.02 -0.16 5.95 16 10 H 0.06 1.51 7.02 -51.93 -0.36 1.15 16 11 N -0.81 -18.58 8.13 -6.65 -0.05 -18.63 16 12 C -0.05 -1.10 5.00 -104.41 -0.52 -1.62 16 13 C -0.12 -2.13 9.27 -39.61 -0.37 -2.49 16 14 C -0.13 -1.96 10.04 -39.53 -0.40 -2.36 16 15 C -0.13 -1.95 10.04 -39.62 -0.40 -2.35 16 16 C -0.14 -2.20 9.32 -39.37 -0.37 -2.57 16 17 C -0.09 -1.72 6.11 -39.03 -0.24 -1.96 16 18 S -0.05 -0.83 20.04 -107.50 -2.15 -2.98 16 19 C -0.18 -2.47 3.26 -25.65 -0.08 -2.55 16 20 C 0.05 0.63 8.77 37.61 0.33 0.96 16 21 O -0.38 -5.15 12.45 -35.23 -0.44 -5.59 16 22 C 0.07 0.85 8.81 37.61 0.33 1.18 16 23 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 24 H 0.32 6.91 7.20 -39.30 -0.28 6.62 16 25 H 0.30 6.14 9.06 -39.29 -0.36 5.79 16 26 H 0.12 2.10 6.28 -52.48 -0.33 1.77 16 27 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 28 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 29 H 0.11 1.54 5.67 -52.49 -0.30 1.25 16 30 H 0.12 1.51 6.83 -51.93 -0.35 1.15 16 31 H 0.09 1.15 8.10 -51.93 -0.42 0.73 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.09 1.10 8.10 -51.93 -0.42 0.68 16 LS Contribution 297.97 15.07 4.49 4.49 Total: -1.00 -30.17 297.97 -8.80 -38.96 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -4.06 Total: 10.97 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -2.27 Total: -19.89 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 0.65 Total: -42.27 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.44 Total: -5.59 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -0.83 SS G_CDS: -2.15 Total: -2.98 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.17 -8.80 -38.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260240007.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.504 kcal (2) G-P(sol) polarization free energy of solvation -30.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds