Wall clock time and date at job start Mon Mar 30 2020 06:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00065 * 2 1 4 4 H 1.48498 * 109.47230 * 269.99982 * 3 2 1 5 5 H 1.48498 * 109.47250 * 29.99780 * 3 2 1 6 6 H 1.48494 * 109.47254 * 150.00296 * 3 2 1 7 7 C 1.37876 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00072 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99952 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46750 * 299.99978 * 9 7 2 11 11 N 1.46900 * 109.46879 * 60.00065 * 9 7 2 12 12 C 1.50694 * 109.46897 * 179.97438 * 9 7 2 13 13 C 1.38105 * 120.04410 * 264.99792 * 12 9 7 14 14 C 1.38279 * 120.08281 * 179.70567 * 13 12 9 15 15 C 1.38323 * 120.15818 * 0.04549 * 14 13 12 16 16 C 1.38057 * 120.08648 * 359.97261 * 15 14 13 17 17 C 1.38955 * 120.03903 * 84.72464 * 12 9 7 18 18 S 1.76202 * 120.08188 * 0.25233 * 17 12 9 19 19 C 1.81396 * 103.00112 * 180.02562 * 18 17 12 20 20 C 1.54040 * 113.81594 * 271.18481 * 19 18 17 21 21 O 1.44169 * 85.51907 * 223.19845 * 20 19 18 22 22 C 1.44175 * 93.34229 * 24.19148 * 21 20 19 23 23 H 0.97007 * 119.99671 * 0.02562 * 1 2 3 24 24 H 1.00890 * 111.00329 * 59.99894 * 11 9 7 25 25 H 1.00906 * 110.99213 * 183.95931 * 11 9 7 26 26 H 1.08004 * 119.95424 * 359.72708 * 13 12 9 27 27 H 1.07998 * 119.91845 * 180.02562 * 14 13 12 28 28 H 1.08003 * 119.95351 * 179.97438 * 15 14 13 29 29 H 1.07994 * 120.04422 * 180.02562 * 16 15 14 30 30 H 1.09001 * 113.00470 * 43.16969 * 19 18 17 31 31 H 1.09002 * 113.86252 * 337.34617 * 20 19 18 32 32 H 1.08999 * 113.86452 * 109.04478 * 20 19 18 33 33 H 1.08998 * 113.86788 * 221.65893 * 22 21 20 34 34 H 1.08999 * 113.98410 * 89.96719 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6240 -2.5574 0.8880 11 7 0.4069 -2.5761 -1.2015 12 6 2.2302 -3.6445 -0.0027 13 6 2.6003 -4.2368 -1.1942 14 6 3.5035 -5.2838 -1.1966 15 6 4.0388 -5.7426 -0.0065 16 6 3.6733 -5.1558 1.1885 17 6 2.7663 -4.1024 1.1947 18 16 2.2976 -3.3497 2.7173 19 6 3.2500 -4.2853 3.9453 20 6 2.5254 -5.5389 4.4710 21 8 2.9941 -5.1264 5.7705 22 6 3.1158 -3.7436 5.3810 23 1 -0.4850 0.8401 -0.0004 24 1 0.9651 -2.5241 -2.0403 25 1 -0.1571 -3.4128 -1.1937 26 1 2.1840 -3.8813 -2.1252 27 1 3.7914 -5.7447 -2.1299 28 1 4.7437 -6.5609 -0.0122 29 1 4.0919 -5.5142 2.1172 30 1 4.2799 -4.4665 3.6377 31 1 1.4417 -5.5006 4.3605 32 1 2.9583 -6.4768 4.1233 33 1 4.0169 -3.2577 5.7550 34 1 2.2135 -3.1553 5.5477 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260240007.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:23 Heat of formation + Delta-G solvation = 3.425376 kcal Electronic energy + Delta-G solvation = -17681.693064 eV Core-core repulsion = 14899.369175 eV Total energy + Delta-G solvation = -2782.323889 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.17473 -40.15908 -36.38240 -33.67494 -32.12345 -31.02102 -30.47155 -28.00256 -27.62069 -24.78652 -23.54412 -22.34441 -21.28633 -18.62269 -18.49111 -17.99543 -17.32208 -16.79385 -16.71868 -16.44000 -16.04261 -15.61148 -14.80797 -14.58770 -14.43845 -14.22085 -13.94468 -13.73904 -13.21573 -13.01323 -12.76460 -12.69456 -12.47111 -12.18309 -11.77853 -11.67973 -11.30928 -10.88147 -10.75437 -10.57301 -10.48622 -9.61451 -8.92537 -8.26297 -7.94027 -6.14277 0.37581 0.54561 0.66120 1.41370 1.42953 1.52143 1.57241 2.47189 2.57745 2.88102 3.03958 3.28660 3.78409 4.03023 4.05962 4.12412 4.25908 4.30407 4.38967 4.47885 4.61704 4.66762 4.74992 4.89546 4.94201 4.97362 5.13572 5.31220 5.43076 5.59006 5.74256 5.80402 6.09242 6.21927 6.67261 7.11003 7.25250 7.55973 9.08127 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.016340 B = 0.007641 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.139787 B = 3663.492001 C = 4778.586947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.037 0.963 9 C 0.262 3.738 10 H 0.020 0.980 11 N -0.821 5.821 12 C -0.089 4.089 13 C -0.128 4.128 14 C -0.121 4.121 15 C -0.118 4.118 16 C -0.136 4.136 17 C -0.101 4.101 18 S -0.117 6.117 19 C -0.165 4.165 20 C 0.055 3.945 21 O -0.390 6.390 22 C 0.070 3.930 23 H 0.254 0.746 24 H 0.324 0.676 25 H 0.311 0.689 26 H 0.122 0.878 27 H 0.149 0.851 28 H 0.155 0.845 29 H 0.138 0.862 30 H 0.129 0.871 31 H 0.091 0.909 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.959 -12.316 4.582 15.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.056 0.944 9 C 0.152 3.848 10 H 0.038 0.962 11 N -0.348 5.348 12 C -0.096 4.096 13 C -0.148 4.148 14 C -0.142 4.142 15 C -0.138 4.138 16 C -0.160 4.160 17 C -0.214 4.214 18 S 0.129 5.871 19 C -0.294 4.294 20 C -0.024 4.024 21 O -0.309 6.309 22 C -0.008 4.008 23 H 0.063 0.937 24 H 0.137 0.863 25 H 0.122 0.878 26 H 0.140 0.860 27 H 0.166 0.834 28 H 0.173 0.827 29 H 0.156 0.844 30 H 0.147 0.853 31 H 0.109 0.891 32 H 0.133 0.867 33 H 0.140 0.860 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.721 -10.698 5.425 13.749 hybrid contribution 1.487 -0.498 -0.863 1.790 sum 8.208 -11.196 4.562 14.613 Atomic orbital electron populations 1.70220 1.06847 1.26129 1.48350 1.25562 0.95322 1.01354 0.94220 0.85870 0.78905 0.80615 0.78027 1.20345 1.20946 1.19782 1.20856 0.91427 0.90700 1.53205 0.94447 1.17811 0.87723 0.89372 0.89939 0.96192 1.58982 1.28498 1.43066 1.04286 1.21275 0.98860 0.97146 0.92330 1.21098 0.99361 0.97350 0.96961 1.21427 0.96791 0.96479 0.99471 1.21297 1.00430 1.00632 0.91426 1.21364 0.98249 0.96355 1.00025 1.21704 1.02567 1.00582 0.96525 1.86468 1.56677 1.47096 0.96897 1.27123 1.04313 1.00068 0.97865 1.24423 0.99732 0.97542 0.80663 1.89672 1.86547 1.21469 1.33232 1.23880 1.04030 0.85150 0.87735 0.93698 0.86271 0.87796 0.86040 0.83365 0.82716 0.84443 0.85317 0.89115 0.86674 0.85985 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.09 12.77 21.45 0.27 -51.82 16 2 C 0.04 2.19 5.39 84.65 0.46 2.64 16 3 Si 0.94 44.64 29.54 68.60 2.03 46.66 16 4 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 5 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 6 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.52 -29.04 8.69 25.60 0.22 -28.81 16 8 H 0.04 2.13 7.74 -2.91 -0.02 2.11 16 9 C 0.26 13.13 2.31 43.42 0.10 13.23 16 10 H 0.02 1.15 7.02 -2.39 -0.02 1.14 16 11 N -0.82 -38.87 8.13 -174.95 -1.42 -40.29 16 12 C -0.09 -3.73 5.00 -19.73 -0.10 -3.82 16 13 C -0.13 -4.55 9.27 22.25 0.21 -4.35 16 14 C -0.12 -3.40 10.04 22.30 0.22 -3.17 16 15 C -0.12 -3.05 10.04 22.25 0.22 -2.82 16 16 C -0.14 -4.01 9.32 22.41 0.21 -3.81 16 17 C -0.10 -3.79 6.11 22.62 0.14 -3.66 16 18 S -0.12 -4.32 20.04 -56.49 -1.13 -5.45 16 19 C -0.16 -4.19 3.26 31.30 0.10 -4.09 16 20 C 0.05 1.24 8.77 72.28 0.63 1.87 16 21 O -0.39 -9.74 12.45 -148.98 -1.86 -11.59 16 22 C 0.07 1.61 8.81 72.27 0.64 2.25 16 23 H 0.25 14.43 8.31 -92.70 -0.77 13.66 16 24 H 0.32 14.41 7.20 -89.70 -0.65 13.76 16 25 H 0.31 13.21 9.06 -89.69 -0.81 12.39 16 26 H 0.12 4.17 6.28 -2.91 -0.02 4.15 16 27 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 28 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 29 H 0.14 3.26 5.67 -2.91 -0.02 3.24 16 30 H 0.13 2.96 6.83 -2.39 -0.02 2.94 16 31 H 0.09 2.13 8.10 -2.39 -0.02 2.11 16 32 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.09 2.10 8.10 -2.39 -0.02 2.08 16 Total: -1.00 -66.76 297.97 0.62 -66.14 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: -0.32 Total: 30.89 kcal Atomic # 6 Polarization: -37.59 SS G_CDS: 3.05 Total: -34.54 kcal Atomic # 7 Polarization: -90.96 SS G_CDS: -1.15 Total: -92.11 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -1.86 Total: -11.59 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: -4.32 SS G_CDS: -1.13 Total: -5.45 kcal Total: -66.76 0.62 -66.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260240007.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.561 kcal (2) G-P(sol) polarization free energy of solvation -66.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds