Wall clock time and date at job start Mon Mar 30 2020 06:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 11 11 N 1.46894 * 109.46702 * 300.00062 * 9 7 2 12 12 C 1.50696 * 109.47259 * 180.02562 * 9 7 2 13 13 C 1.38100 * 120.04151 * 99.72135 * 12 9 7 14 14 C 1.38280 * 120.07902 * 179.76697 * 13 12 9 15 15 C 1.38323 * 120.16255 * 0.51257 * 14 13 12 16 16 C 1.38058 * 120.07850 * 359.74151 * 15 14 13 17 17 C 1.38952 * 120.03904 * 279.99818 * 12 9 7 18 18 S 1.76202 * 120.08010 * 0.02562 * 17 12 9 19 19 C 1.81402 * 102.99801 * 180.02562 * 18 17 12 20 20 C 1.54041 * 113.81545 * 271.18489 * 19 18 17 21 21 O 1.44175 * 85.51816 * 223.20027 * 20 19 18 22 22 C 1.44179 * 93.34215 * 24.19040 * 21 20 19 23 23 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 24 24 H 1.00907 * 110.99654 * 176.04446 * 11 9 7 25 25 H 1.00901 * 111.00146 * 299.99618 * 11 9 7 26 26 H 1.07994 * 119.95976 * 0.02562 * 13 12 9 27 27 H 1.08008 * 119.92092 * 180.23755 * 14 13 12 28 28 H 1.08001 * 119.95966 * 179.72376 * 15 14 13 29 29 H 1.08004 * 120.03856 * 180.02562 * 16 15 14 30 30 H 1.08992 * 113.00519 * 43.17314 * 19 18 17 31 31 H 1.08999 * 113.86177 * 337.34682 * 20 19 18 32 32 H 1.08996 * 113.86398 * 109.04928 * 20 19 18 33 33 H 1.09000 * 113.86422 * 221.66254 * 22 21 20 34 34 H 1.09001 * 113.86454 * 89.95605 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8897 11 7 0.4062 -2.5767 1.1996 12 6 2.2304 -3.6445 0.0018 13 6 2.5254 -4.3007 1.1806 14 6 3.4202 -5.3549 1.1819 15 6 4.0311 -5.7494 0.0052 16 6 3.7451 -5.0947 -1.1762 17 6 2.8421 -4.0380 -1.1822 18 16 2.4749 -3.1987 -2.6873 19 6 3.5018 -4.0710 -3.9019 20 6 4.9191 -3.4866 -4.0523 21 8 4.7146 -3.6524 -5.4698 22 6 3.2782 -3.6065 -5.3534 23 1 -0.4850 -0.8401 -0.0004 24 1 -0.1578 -3.4134 1.1911 25 1 0.9638 -2.5251 2.0389 26 1 2.0534 -3.9928 2.1019 27 1 3.6461 -5.8687 2.1047 28 1 4.7329 -6.5703 0.0107 29 1 4.2221 -5.4036 -2.0946 30 1 3.4810 -5.1537 -3.7781 31 1 5.0028 -2.4464 -3.7375 32 1 5.7040 -4.1223 -3.6426 33 1 2.7618 -4.3373 -5.9757 34 1 2.8610 -2.6029 -5.4360 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260240023.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:25 Heat of formation + Delta-G solvation = 18.623993 kcal Electronic energy + Delta-G solvation = -17777.960488 eV Core-core repulsion = 14996.295660 eV Total energy + Delta-G solvation = -2781.664828 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.14583 -38.88220 -34.97218 -31.61730 -30.88919 -29.82739 -29.17861 -26.65816 -25.69730 -22.99250 -22.30481 -21.15687 -20.05132 -17.44872 -17.03609 -16.69201 -16.28137 -15.75301 -15.26211 -14.87832 -14.31540 -13.77399 -13.55488 -13.40235 -13.21861 -12.87656 -12.72199 -12.08662 -11.82422 -11.80226 -11.40930 -10.89726 -10.70517 -10.51679 -10.38204 -10.02996 -9.84414 -9.48974 -9.35176 -8.94761 -8.34128 -8.08582 -7.56177 -6.89729 -6.15386 -3.97504 1.61887 1.80902 1.88160 2.78651 3.49928 3.51306 3.57907 3.69635 4.02871 4.14227 4.63579 4.77411 5.02475 5.16312 5.24826 5.30421 5.36549 5.42126 5.47590 5.70051 5.73928 5.90168 5.93127 5.98150 6.02821 6.17884 6.41298 6.67324 6.73416 6.84573 7.21476 7.32813 7.96040 8.27435 8.64722 8.72196 9.06578 9.84085 11.24250 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.014967 B = 0.008402 C = 0.006120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.313321 B = 3331.547209 C = 4574.436110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.041 3.959 3 Si 1.061 2.939 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.288 1.288 7 C -0.595 4.595 8 H 0.046 0.954 9 C 0.236 3.764 10 H 0.048 0.952 11 N -0.830 5.830 12 C -0.048 4.048 13 C -0.118 4.118 14 C -0.125 4.125 15 C -0.129 4.129 16 C -0.136 4.136 17 C -0.089 4.089 18 S -0.043 6.043 19 C -0.185 4.185 20 C 0.053 3.947 21 O -0.379 6.379 22 C 0.070 3.930 23 H 0.289 0.711 24 H 0.302 0.698 25 H 0.327 0.673 26 H 0.120 0.880 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.782 -10.406 -4.513 13.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.169 4.169 3 Si 0.890 3.110 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.635 4.635 8 H 0.064 0.936 9 C 0.127 3.873 10 H 0.065 0.935 11 N -0.358 5.358 12 C -0.055 4.055 13 C -0.139 4.139 14 C -0.145 4.145 15 C -0.148 4.148 16 C -0.160 4.160 17 C -0.202 4.202 18 S 0.203 5.797 19 C -0.314 4.314 20 C -0.026 4.026 21 O -0.299 6.299 22 C -0.009 4.009 23 H 0.102 0.898 24 H 0.113 0.887 25 H 0.141 0.859 26 H 0.138 0.862 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.116 0.884 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.630 -7.150 -5.343 10.553 hybrid contribution 1.641 -3.822 0.867 4.248 sum 7.271 -10.971 -4.476 13.902 Atomic orbital electron populations 1.70554 1.06808 1.32698 1.42348 1.25549 0.96553 1.01626 0.93166 0.83689 0.75007 0.75916 0.76409 1.20942 1.21739 1.21500 1.21498 0.93223 0.89852 1.58881 0.93598 1.18419 0.88116 0.90486 0.90306 0.93505 1.59429 1.28593 1.42384 1.05379 1.21296 0.97407 0.96283 0.90531 1.20951 0.98995 0.96164 0.97752 1.21037 0.97977 0.97884 0.97625 1.20791 1.00936 1.00451 0.92658 1.21030 0.99578 0.97094 0.98311 1.21593 1.01600 0.99290 0.97718 1.86366 1.55704 1.41348 0.96280 1.27016 0.99943 1.04826 0.99574 1.24332 0.95326 1.01855 0.81071 1.89672 1.20810 1.94144 1.25230 1.23727 0.83318 1.02096 0.91712 0.89846 0.88694 0.85943 0.86188 0.86731 0.86744 0.86910 0.86712 0.88397 0.89071 0.88337 0.88951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.51 55.43 0.75 -25.73 16 2 C 0.04 1.15 5.39 -17.82 -0.10 1.05 16 3 Si 1.06 25.22 29.90 -169.99 -5.08 20.14 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.60 -16.10 8.38 -34.44 -0.29 -16.39 16 8 H 0.05 1.29 7.74 -52.48 -0.41 0.88 16 9 C 0.24 5.67 1.90 -70.02 -0.13 5.54 16 10 H 0.05 1.24 7.12 -51.93 -0.37 0.87 16 11 N -0.83 -18.59 7.27 -6.65 -0.05 -18.64 16 12 C -0.05 -0.99 5.03 -104.41 -0.53 -1.52 16 13 C -0.12 -2.17 9.25 -39.62 -0.37 -2.53 16 14 C -0.12 -1.95 10.04 -39.53 -0.40 -2.35 16 15 C -0.13 -1.93 10.04 -39.62 -0.40 -2.33 16 16 C -0.14 -2.21 9.32 -39.37 -0.37 -2.58 16 17 C -0.09 -1.70 6.10 -39.04 -0.24 -1.94 16 18 S -0.04 -0.79 19.89 -107.50 -2.14 -2.93 16 19 C -0.18 -2.52 3.26 -25.65 -0.08 -2.61 16 20 C 0.05 0.70 8.77 37.61 0.33 1.03 16 21 O -0.38 -5.31 12.45 -35.23 -0.44 -5.75 16 22 C 0.07 0.86 8.81 37.61 0.33 1.19 16 23 H 0.29 8.61 6.39 -40.82 -0.26 8.35 16 24 H 0.30 5.98 9.06 -39.29 -0.36 5.63 16 25 H 0.33 7.03 7.28 -39.29 -0.29 6.74 16 26 H 0.12 2.07 6.24 -52.49 -0.33 1.74 16 27 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 28 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 29 H 0.11 1.56 5.67 -52.48 -0.30 1.27 16 30 H 0.11 1.44 6.83 -51.93 -0.35 1.08 16 31 H 0.10 1.35 8.10 -51.93 -0.42 0.93 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.09 1.14 8.10 -51.93 -0.42 0.72 16 LS Contribution 295.57 15.07 4.45 4.45 Total: -1.00 -30.66 295.57 -8.72 -39.38 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -3.99 Total: 12.51 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: -2.23 Total: -23.44 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: 0.70 Total: -44.37 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.44 Total: -5.75 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -5.08 Total: 20.14 kcal Atomic # 16 Polarization: -0.79 SS G_CDS: -2.14 Total: -2.93 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.66 -8.72 -39.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260240023.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.008 kcal (2) G-P(sol) polarization free energy of solvation -30.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds