Wall clock time and date at job start Mon Mar 30 2020 06:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 11 11 N 1.46894 * 109.46702 * 300.00062 * 9 7 2 12 12 C 1.50696 * 109.47259 * 180.02562 * 9 7 2 13 13 C 1.38100 * 120.04151 * 99.72135 * 12 9 7 14 14 C 1.38280 * 120.07902 * 179.76697 * 13 12 9 15 15 C 1.38323 * 120.16255 * 0.51257 * 14 13 12 16 16 C 1.38058 * 120.07850 * 359.74151 * 15 14 13 17 17 C 1.38952 * 120.03904 * 279.99818 * 12 9 7 18 18 S 1.76202 * 120.08010 * 0.02562 * 17 12 9 19 19 C 1.81402 * 102.99801 * 180.02562 * 18 17 12 20 20 C 1.54041 * 113.81545 * 271.18489 * 19 18 17 21 21 O 1.44175 * 85.51816 * 223.20027 * 20 19 18 22 22 C 1.44179 * 93.34215 * 24.19040 * 21 20 19 23 23 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 24 24 H 1.00907 * 110.99654 * 176.04446 * 11 9 7 25 25 H 1.00901 * 111.00146 * 299.99618 * 11 9 7 26 26 H 1.07994 * 119.95976 * 0.02562 * 13 12 9 27 27 H 1.08008 * 119.92092 * 180.23755 * 14 13 12 28 28 H 1.08001 * 119.95966 * 179.72376 * 15 14 13 29 29 H 1.08004 * 120.03856 * 180.02562 * 16 15 14 30 30 H 1.08992 * 113.00519 * 43.17314 * 19 18 17 31 31 H 1.08999 * 113.86177 * 337.34682 * 20 19 18 32 32 H 1.08996 * 113.86398 * 109.04928 * 20 19 18 33 33 H 1.09000 * 113.86422 * 221.66254 * 22 21 20 34 34 H 1.09001 * 113.86454 * 89.95605 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8897 11 7 0.4062 -2.5767 1.1996 12 6 2.2304 -3.6445 0.0018 13 6 2.5254 -4.3007 1.1806 14 6 3.4202 -5.3549 1.1819 15 6 4.0311 -5.7494 0.0052 16 6 3.7451 -5.0947 -1.1762 17 6 2.8421 -4.0380 -1.1822 18 16 2.4749 -3.1987 -2.6873 19 6 3.5018 -4.0710 -3.9019 20 6 4.9191 -3.4866 -4.0523 21 8 4.7146 -3.6524 -5.4698 22 6 3.2782 -3.6065 -5.3534 23 1 -0.4850 -0.8401 -0.0004 24 1 -0.1578 -3.4134 1.1911 25 1 0.9638 -2.5251 2.0389 26 1 2.0534 -3.9928 2.1019 27 1 3.6461 -5.8687 2.1047 28 1 4.7329 -6.5703 0.0107 29 1 4.2221 -5.4036 -2.0946 30 1 3.4810 -5.1537 -3.7781 31 1 5.0028 -2.4464 -3.7375 32 1 5.7040 -4.1223 -3.6426 33 1 2.7618 -4.3373 -5.9757 34 1 2.8610 -2.6029 -5.4360 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260240023.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:24 Heat of formation + Delta-G solvation = -1.875732 kcal Electronic energy + Delta-G solvation = -17778.849423 eV Core-core repulsion = 14996.295660 eV Total energy + Delta-G solvation = -2782.553763 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.20606 -40.27385 -36.73418 -33.55728 -32.18972 -31.12240 -30.53132 -27.70652 -27.58165 -24.72689 -23.61784 -22.46871 -21.46786 -18.93200 -18.65058 -18.02845 -17.37446 -16.84303 -16.77602 -16.39872 -15.85528 -15.58195 -15.11968 -14.78933 -14.46473 -14.26246 -13.87488 -13.77564 -13.47933 -13.01861 -12.72321 -12.58336 -12.31988 -12.08871 -11.89936 -11.74857 -10.91457 -10.88813 -10.79925 -10.62323 -10.42688 -9.65390 -9.33629 -8.38437 -8.26234 -6.16379 0.30613 0.46940 0.59961 1.51641 1.55079 1.62459 1.80859 2.55039 2.63036 2.81042 2.99411 3.36007 3.73040 3.95651 4.02170 4.03698 4.16885 4.19258 4.28651 4.43364 4.50512 4.58467 4.71705 4.83762 4.87993 4.93875 5.00836 5.13439 5.35018 5.50471 5.63362 5.95331 6.04636 6.26882 6.68608 6.80743 7.03353 7.71306 9.03224 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.014967 B = 0.008402 C = 0.006120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.313321 B = 3331.547209 C = 4574.436110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 1.101 2.899 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.590 4.590 8 H 0.029 0.971 9 C 0.245 3.755 10 H 0.013 0.987 11 N -0.837 5.837 12 C -0.086 4.086 13 C -0.130 4.130 14 C -0.121 4.121 15 C -0.117 4.117 16 C -0.136 4.136 17 C -0.100 4.100 18 S -0.117 6.117 19 C -0.163 4.163 20 C 0.053 3.947 21 O -0.389 6.389 22 C 0.071 3.929 23 H 0.277 0.723 24 H 0.317 0.683 25 H 0.331 0.669 26 H 0.122 0.878 27 H 0.150 0.850 28 H 0.157 0.843 29 H 0.139 0.861 30 H 0.133 0.867 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.127 0.873 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.049 -12.500 -4.554 16.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.211 4.211 3 Si 0.925 3.075 4 H -0.212 1.212 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.629 4.629 8 H 0.048 0.952 9 C 0.135 3.865 10 H 0.030 0.970 11 N -0.367 5.367 12 C -0.093 4.093 13 C -0.150 4.150 14 C -0.141 4.141 15 C -0.136 4.136 16 C -0.160 4.160 17 C -0.213 4.213 18 S 0.129 5.871 19 C -0.292 4.292 20 C -0.025 4.025 21 O -0.308 6.308 22 C -0.007 4.007 23 H 0.088 0.912 24 H 0.129 0.871 25 H 0.145 0.855 26 H 0.140 0.860 27 H 0.168 0.832 28 H 0.175 0.825 29 H 0.157 0.843 30 H 0.151 0.849 31 H 0.103 0.897 32 H 0.133 0.867 33 H 0.145 0.855 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.908 -9.261 -5.375 13.311 hybrid contribution 1.004 -3.318 0.843 3.568 sum 8.912 -12.579 -4.532 16.069 Atomic orbital electron populations 1.70665 1.07665 1.31949 1.45386 1.26763 0.96663 1.04995 0.92697 0.83148 0.74281 0.72653 0.77376 1.21244 1.20240 1.20201 1.21666 0.92465 0.91549 1.57218 0.95228 1.17978 0.88282 0.90930 0.89298 0.96957 1.59191 1.28867 1.43511 1.05086 1.21025 0.98733 0.96926 0.92620 1.21095 0.99935 0.97083 0.96858 1.21433 0.96450 0.96635 0.99572 1.21323 1.00248 1.00455 0.91566 1.21381 0.98533 0.95899 1.00159 1.21697 1.02427 1.00307 0.96844 1.86542 1.57912 1.43930 0.98760 1.27121 0.98964 1.05117 0.98031 1.24373 0.95607 1.01730 0.80809 1.89675 1.21541 1.94131 1.25467 1.23898 0.82869 1.02718 0.91223 0.91178 0.87142 0.85471 0.86047 0.83214 0.82519 0.84321 0.84923 0.89677 0.86703 0.85475 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.67 13.51 21.45 0.29 -56.38 16 2 C -0.01 -0.44 5.39 84.65 0.46 0.02 16 3 Si 1.10 51.70 29.90 68.60 2.05 53.75 16 4 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.59 -32.91 8.38 25.60 0.21 -32.70 16 8 H 0.03 1.70 7.74 -2.91 -0.02 1.68 16 9 C 0.25 12.21 1.90 43.42 0.08 12.29 16 10 H 0.01 0.72 7.12 -2.38 -0.02 0.70 16 11 N -0.84 -38.74 7.27 -174.95 -1.27 -40.01 16 12 C -0.09 -3.60 5.03 -19.73 -0.10 -3.70 16 13 C -0.13 -4.61 9.25 22.25 0.21 -4.40 16 14 C -0.12 -3.35 10.04 22.30 0.22 -3.13 16 15 C -0.12 -2.98 10.04 22.25 0.22 -2.75 16 16 C -0.14 -4.01 9.32 22.41 0.21 -3.80 16 17 C -0.10 -3.77 6.10 22.62 0.14 -3.63 16 18 S -0.12 -4.37 19.89 -56.49 -1.12 -5.49 16 19 C -0.16 -4.18 3.26 31.30 0.10 -4.08 16 20 C 0.05 1.30 8.77 72.28 0.63 1.94 16 21 O -0.39 -10.02 12.45 -148.98 -1.86 -11.88 16 22 C 0.07 1.62 8.81 72.27 0.64 2.26 16 23 H 0.28 17.26 6.39 -92.71 -0.59 16.67 16 24 H 0.32 12.95 9.06 -89.69 -0.81 12.14 16 25 H 0.33 14.58 7.28 -89.69 -0.65 13.93 16 26 H 0.12 4.13 6.24 -2.91 -0.02 4.11 16 27 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 28 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 29 H 0.14 3.28 5.67 -2.91 -0.02 3.26 16 30 H 0.13 2.91 6.83 -2.39 -0.02 2.89 16 31 H 0.09 2.30 8.10 -2.39 -0.02 2.28 16 32 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.13 2.19 8.14 -2.39 -0.02 2.18 16 34 H 0.09 2.09 8.10 -2.39 -0.02 2.07 16 Total: -1.00 -68.66 295.57 0.96 -67.70 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: -0.15 Total: 34.00 kcal Atomic # 6 Polarization: -44.71 SS G_CDS: 3.03 Total: -41.69 kcal Atomic # 7 Polarization: -95.41 SS G_CDS: -0.98 Total: -96.39 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -1.86 Total: -11.88 kcal Atomic # 14 Polarization: 51.70 SS G_CDS: 2.05 Total: 53.75 kcal Atomic # 16 Polarization: -4.37 SS G_CDS: -1.12 Total: -5.49 kcal Total: -68.66 0.96 -67.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260240023.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.820 kcal (2) G-P(sol) polarization free energy of solvation -68.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds