Wall clock time and date at job start Mon Mar 30 2020 06:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.39867 * 125.45074 * 2 1 4 4 C 1.30305 * 110.08327 * 179.97438 * 3 2 1 5 5 Cl 1.73596 * 126.12193 * 180.02562 * 4 3 2 6 6 C 1.46012 * 107.75818 * 0.02562 * 4 3 2 7 7 C 1.39916 * 134.02810 * 180.02562 * 6 4 3 8 8 C 1.36469 * 119.63898 * 179.97438 * 7 6 4 9 9 C 1.38966 * 120.62514 * 0.02562 * 8 7 6 10 10 C 1.50697 * 119.59089 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.47205 * 159.99847 * 10 9 8 12 12 N 1.46901 * 109.47277 * 40.00112 * 10 9 8 13 13 C 1.50700 * 109.47266 * 279.99754 * 10 9 8 14 14 H 1.07999 * 119.99988 * 0.02562 * 13 10 9 15 15 C 1.37885 * 120.00047 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 10 17 17 Si 1.86805 * 119.99854 * 359.72512 * 15 13 10 18 18 H 1.48498 * 109.46909 * 90.00086 * 17 15 13 19 19 H 1.48497 * 109.46701 * 209.99996 * 17 15 13 20 20 H 1.48500 * 109.46867 * 330.00101 * 17 15 13 21 21 C 1.36584 * 120.81410 * 0.25506 * 9 8 7 22 22 C 1.37042 * 125.44892 * 179.97438 * 2 1 3 23 23 H 1.09004 * 109.46624 * 270.03488 * 1 2 3 24 24 H 1.08995 * 109.47284 * 30.03834 * 1 2 3 25 25 H 1.09004 * 109.46939 * 150.04155 * 1 2 3 26 26 H 1.07999 * 120.17934 * 0.02562 * 7 6 4 27 27 H 1.08001 * 119.68932 * 180.02562 * 8 7 6 28 28 H 1.00893 * 110.99930 * 299.99775 * 12 10 9 29 29 H 1.00899 * 110.99979 * 63.95221 * 12 10 9 30 30 H 0.97001 * 119.99646 * 180.02562 * 16 15 13 31 31 H 1.08005 * 120.07802 * 179.75101 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2762 1.1394 0.0000 4 6 3.5327 0.7941 0.0005 5 17 4.8911 1.8750 0.0014 6 6 3.5936 -0.6648 0.0003 7 6 4.6393 -1.5944 0.0011 8 6 4.3556 -2.9293 0.0011 9 6 3.0387 -3.3731 -0.0002 10 6 2.7521 -4.8526 -0.0007 11 1 1.7346 -5.0257 0.3498 12 7 3.6997 -5.5353 0.8903 13 6 2.9000 -5.3925 -1.3999 14 1 3.1746 -4.7305 -2.2079 15 6 2.6848 -6.7315 -1.6486 16 7 2.8144 -7.2027 -2.8696 17 14 2.2175 -7.8779 -0.2496 18 1 0.7390 -7.9198 -0.1170 19 1 2.7276 -9.2426 -0.5367 20 1 2.8143 -7.3825 1.0167 21 6 2.0011 -2.4850 -0.0067 22 6 2.2598 -1.1164 0.0005 23 1 -0.3633 0.0006 1.0277 24 1 -0.3633 0.8896 -0.5144 25 1 -0.3633 -0.8904 -0.5132 26 1 5.6653 -1.2574 0.0026 27 1 5.1621 -3.6476 0.0022 28 1 4.6507 -5.3900 0.5864 29 1 3.5761 -5.2373 1.8463 30 1 2.6627 -8.1447 -3.0445 31 1 0.9821 -2.8431 -0.0117 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260295072.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:49 Heat of formation + Delta-G solvation = 93.751100 kcal Electronic energy + Delta-G solvation = -17275.898660 eV Core-core repulsion = 14391.907538 eV Total energy + Delta-G solvation = -2883.991122 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.14049 -37.78378 -36.86061 -34.37452 -33.15498 -31.81101 -30.25306 -29.13024 -26.54049 -26.14012 -23.09669 -22.32439 -20.83039 -19.88300 -17.04443 -16.93597 -16.52009 -15.59204 -15.19696 -14.81534 -14.59656 -13.98079 -13.79127 -13.63366 -13.35214 -12.73415 -12.42915 -12.26770 -12.04167 -11.70130 -11.65464 -11.31916 -10.86853 -10.77064 -10.55736 -10.22963 -9.99320 -9.70402 -9.32239 -8.58997 -8.15326 -7.66785 -7.28414 -6.04920 -4.16301 1.13656 1.35922 1.78553 2.45052 2.77032 3.47459 3.58807 3.89133 4.10028 4.46812 4.66246 4.73201 5.07752 5.15183 5.24716 5.34739 5.38472 5.43490 5.66033 5.76250 5.85399 6.06482 6.19205 6.40817 6.65023 6.75035 6.95724 7.15155 7.21348 7.52060 7.54901 8.10383 8.26729 8.62855 8.95259 9.58224 11.04510 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.029831 B = 0.005199 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.404283 B = 5384.088225 C = 5825.713495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.401 5.401 3 N -0.249 5.249 4 C 0.140 3.860 5 Cl 0.009 6.991 6 C -0.183 4.183 7 C -0.045 4.045 8 C -0.139 4.139 9 C -0.010 4.010 10 C 0.217 3.783 11 H 0.048 0.952 12 N -0.833 5.833 13 C -0.522 4.522 14 H 0.071 0.929 15 C 0.086 3.914 16 N -0.897 5.897 17 Si 0.865 3.135 18 H -0.297 1.297 19 H -0.304 1.304 20 H -0.191 1.191 21 C -0.146 4.146 22 C 0.140 3.860 23 H 0.069 0.931 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.124 0.876 27 H 0.129 0.871 28 H 0.332 0.668 29 H 0.309 0.691 30 H 0.264 0.736 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.025 13.768 8.343 16.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.192 5.192 3 N -0.066 5.066 4 C -0.062 4.062 5 Cl 0.037 6.963 6 C -0.191 4.191 7 C -0.065 4.065 8 C -0.159 4.159 9 C -0.015 4.015 10 C 0.108 3.892 11 H 0.066 0.934 12 N -0.362 5.362 13 C -0.560 4.560 14 H 0.089 0.911 15 C -0.118 4.118 16 N -0.534 5.534 17 Si 0.692 3.308 18 H -0.225 1.225 19 H -0.231 1.231 20 H -0.112 1.112 21 C -0.169 4.169 22 C 0.027 3.973 23 H 0.088 0.912 24 H 0.104 0.896 25 H 0.108 0.892 26 H 0.142 0.858 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.121 0.879 30 H 0.073 0.927 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.257 14.018 8.014 16.195 hybrid contribution 0.604 -0.098 0.429 0.748 sum -0.653 13.919 8.443 16.293 Atomic orbital electron populations 1.21786 0.73588 1.04469 1.03000 1.47852 1.05483 1.00363 1.65478 1.76407 1.00801 1.09521 1.19915 1.23633 0.89047 0.89236 1.04260 1.98376 1.37876 1.63189 1.96863 1.19323 0.93937 0.90139 1.15711 1.20240 0.97266 0.91969 0.97028 1.20601 0.96992 0.94717 1.03595 1.20948 0.92004 0.99202 0.89371 1.18679 0.93238 0.82654 0.94669 0.93420 1.60084 1.09019 1.62890 1.04226 1.20670 1.50189 0.94728 0.90429 0.91129 1.24980 0.92899 0.98210 0.95725 1.69955 1.48123 1.14699 1.20612 0.87227 0.77475 0.78260 0.87811 1.22486 1.23111 1.11215 1.19710 1.00386 0.87621 1.09186 1.18804 0.89432 0.89622 0.99422 0.91243 0.89568 0.89179 0.85773 0.85359 0.85400 0.87949 0.92696 0.85652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.19 11.40 59.85 0.68 1.88 16 2 N -0.40 -6.15 4.05 -65.46 -0.27 -6.41 16 3 N -0.25 -4.02 12.40 34.13 0.42 -3.60 16 4 C 0.14 2.21 8.09 -15.09 -0.12 2.08 16 5 Cl 0.01 0.12 29.33 -51.86 -1.52 -1.40 16 6 C -0.18 -3.06 6.37 -105.18 -0.67 -3.73 16 7 C -0.04 -0.70 10.06 -39.59 -0.40 -1.10 16 8 C -0.14 -2.38 9.20 -39.95 -0.37 -2.75 16 9 C -0.01 -0.19 4.85 -104.95 -0.51 -0.70 16 10 C 0.22 4.59 2.33 -70.02 -0.16 4.42 16 11 H 0.05 1.03 7.40 -51.93 -0.38 0.64 16 12 N -0.83 -15.75 5.64 -6.65 -0.04 -15.79 16 13 C -0.52 -13.84 9.28 -34.44 -0.32 -14.16 16 14 H 0.07 2.09 7.98 -52.49 -0.42 1.68 16 15 C 0.09 2.41 5.47 -17.82 -0.10 2.31 16 16 N -0.90 -27.01 13.96 55.43 0.77 -26.24 16 17 Si 0.87 20.70 26.94 -169.99 -4.58 16.13 16 18 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 19 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 20 H -0.19 -4.16 5.16 56.52 0.29 -3.87 16 21 C -0.15 -2.57 9.55 -39.79 -0.38 -2.95 16 22 C 0.14 2.39 6.87 -84.17 -0.58 1.81 16 23 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.09 0.86 8.13 -51.93 -0.42 0.44 16 26 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 27 H 0.13 2.06 6.61 -52.49 -0.35 1.71 16 28 H 0.33 6.00 7.29 -39.30 -0.29 5.72 16 29 H 0.31 5.01 9.06 -39.29 -0.36 4.65 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.13 2.02 8.01 -52.48 -0.42 1.60 16 LS Contribution 282.32 15.07 4.25 4.25 Total: -1.00 -31.41 282.32 -7.02 -38.43 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -3.15 Total: 7.51 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -2.92 Total: -12.89 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.89 Total: -52.04 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.58 Total: 16.13 kcal Atomic # 17 Polarization: 0.12 SS G_CDS: -1.52 Total: -1.40 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.41 -7.02 -38.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260295072.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.184 kcal (2) G-P(sol) polarization free energy of solvation -31.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds