Wall clock time and date at job start Mon Mar 30 2020 06:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.39867 * 125.45074 * 2 1 4 4 C 1.30305 * 110.08327 * 179.97438 * 3 2 1 5 5 Cl 1.73596 * 126.12193 * 180.02562 * 4 3 2 6 6 C 1.46012 * 107.75818 * 0.02562 * 4 3 2 7 7 C 1.39916 * 134.02810 * 180.02562 * 6 4 3 8 8 C 1.36469 * 119.63898 * 179.97438 * 7 6 4 9 9 C 1.38966 * 120.62514 * 0.02562 * 8 7 6 10 10 C 1.50697 * 119.59089 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.47205 * 159.99847 * 10 9 8 12 12 N 1.46901 * 109.47277 * 40.00112 * 10 9 8 13 13 C 1.50700 * 109.47266 * 279.99754 * 10 9 8 14 14 H 1.07999 * 119.99988 * 0.02562 * 13 10 9 15 15 C 1.37885 * 120.00047 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 10 17 17 Si 1.86805 * 119.99854 * 359.72512 * 15 13 10 18 18 H 1.48498 * 109.46909 * 90.00086 * 17 15 13 19 19 H 1.48497 * 109.46701 * 209.99996 * 17 15 13 20 20 H 1.48500 * 109.46867 * 330.00101 * 17 15 13 21 21 C 1.36584 * 120.81410 * 0.25506 * 9 8 7 22 22 C 1.37042 * 125.44892 * 179.97438 * 2 1 3 23 23 H 1.09004 * 109.46624 * 270.03488 * 1 2 3 24 24 H 1.08995 * 109.47284 * 30.03834 * 1 2 3 25 25 H 1.09004 * 109.46939 * 150.04155 * 1 2 3 26 26 H 1.07999 * 120.17934 * 0.02562 * 7 6 4 27 27 H 1.08001 * 119.68932 * 180.02562 * 8 7 6 28 28 H 1.00893 * 110.99930 * 299.99775 * 12 10 9 29 29 H 1.00899 * 110.99979 * 63.95221 * 12 10 9 30 30 H 0.97001 * 119.99646 * 180.02562 * 16 15 13 31 31 H 1.08005 * 120.07802 * 179.75101 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2762 1.1394 0.0000 4 6 3.5327 0.7941 0.0005 5 17 4.8911 1.8750 0.0014 6 6 3.5936 -0.6648 0.0003 7 6 4.6393 -1.5944 0.0011 8 6 4.3556 -2.9293 0.0011 9 6 3.0387 -3.3731 -0.0002 10 6 2.7521 -4.8526 -0.0007 11 1 1.7346 -5.0257 0.3498 12 7 3.6997 -5.5353 0.8903 13 6 2.9000 -5.3925 -1.3999 14 1 3.1746 -4.7305 -2.2079 15 6 2.6848 -6.7315 -1.6486 16 7 2.8144 -7.2027 -2.8696 17 14 2.2175 -7.8779 -0.2496 18 1 0.7390 -7.9198 -0.1170 19 1 2.7276 -9.2426 -0.5367 20 1 2.8143 -7.3825 1.0167 21 6 2.0011 -2.4850 -0.0067 22 6 2.2598 -1.1164 0.0005 23 1 -0.3633 0.0006 1.0277 24 1 -0.3633 0.8896 -0.5144 25 1 -0.3633 -0.8904 -0.5132 26 1 5.6653 -1.2574 0.0026 27 1 5.1621 -3.6476 0.0022 28 1 4.6507 -5.3900 0.5864 29 1 3.5761 -5.2373 1.8463 30 1 2.6627 -8.1447 -3.0445 31 1 0.9821 -2.8431 -0.0117 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260295072.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:49 Heat of formation + Delta-G solvation = 72.360626 kcal Electronic energy + Delta-G solvation = -17276.826220 eV Core-core repulsion = 14391.907538 eV Total energy + Delta-G solvation = -2884.918682 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.36800 -39.15847 -37.94722 -35.95465 -34.33611 -33.77946 -31.48443 -30.46790 -28.22817 -27.38786 -24.64143 -23.64818 -22.09495 -21.31517 -18.90935 -18.24695 -17.86221 -16.73045 -16.67999 -16.41929 -15.96292 -15.49666 -15.30754 -14.85461 -14.36362 -14.30377 -13.72908 -13.63555 -13.38216 -13.27432 -12.79462 -12.72767 -12.46566 -12.22543 -11.98499 -11.77789 -11.64394 -11.34168 -10.88276 -10.69411 -9.55850 -8.89222 -8.85278 -8.19097 -6.32991 -0.14003 0.25052 0.48170 1.19947 1.56588 1.64677 1.65222 2.00631 2.65683 2.77282 3.20158 3.29510 3.58539 3.91771 4.01849 4.27122 4.36762 4.37468 4.41050 4.47709 4.62921 4.75624 4.89614 5.03383 5.16909 5.42414 5.54251 5.74099 5.82020 5.96574 6.19446 6.32451 6.53777 6.84012 7.09710 7.45267 8.94089 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.029831 B = 0.005199 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.404283 B = 5384.088225 C = 5825.713495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.401 5.401 3 N -0.259 5.259 4 C 0.134 3.866 5 Cl 0.034 6.966 6 C -0.196 4.196 7 C -0.037 4.037 8 C -0.149 4.149 9 C -0.030 4.030 10 C 0.228 3.772 11 H 0.049 0.951 12 N -0.835 5.835 13 C -0.514 4.514 14 H 0.024 0.976 15 C 0.027 3.973 16 N -0.953 5.953 17 Si 0.928 3.072 18 H -0.301 1.301 19 H -0.319 1.319 20 H -0.150 1.150 21 C -0.149 4.149 22 C 0.128 3.872 23 H 0.089 0.911 24 H 0.101 0.899 25 H 0.098 0.902 26 H 0.151 0.849 27 H 0.135 0.865 28 H 0.338 0.662 29 H 0.333 0.667 30 H 0.262 0.738 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.006 14.924 10.477 18.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.192 5.192 3 N -0.076 5.076 4 C -0.068 4.068 5 Cl 0.061 6.939 6 C -0.204 4.204 7 C -0.058 4.058 8 C -0.169 4.169 9 C -0.035 4.035 10 C 0.117 3.883 11 H 0.067 0.933 12 N -0.366 5.366 13 C -0.552 4.552 14 H 0.042 0.958 15 C -0.172 4.172 16 N -0.592 5.592 17 Si 0.753 3.247 18 H -0.229 1.229 19 H -0.248 1.248 20 H -0.071 1.071 21 C -0.172 4.172 22 C 0.014 3.986 23 H 0.107 0.893 24 H 0.120 0.880 25 H 0.117 0.883 26 H 0.169 0.831 27 H 0.153 0.847 28 H 0.153 0.847 29 H 0.146 0.854 30 H 0.070 0.930 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.246 15.215 10.176 18.347 hybrid contribution 0.611 -0.259 -0.286 0.722 sum -0.636 14.957 9.890 17.942 Atomic orbital electron populations 1.22166 0.71231 1.05724 1.04715 1.48260 1.06810 0.99592 1.64507 1.76385 1.01164 1.10033 1.20063 1.23807 0.89672 0.89363 1.03987 1.98383 1.36516 1.62251 1.96711 1.19637 0.94249 0.90958 1.15585 1.20482 0.98472 0.91266 0.95530 1.20685 0.96514 0.95564 1.04118 1.20749 0.93215 0.97948 0.91620 1.18313 0.93786 0.84280 0.91894 0.93280 1.59731 1.08989 1.62612 1.05234 1.20901 1.48202 0.93834 0.92276 0.95766 1.25902 0.93231 1.00162 0.97890 1.70113 1.51068 1.14911 1.23158 0.86355 0.76781 0.75141 0.86392 1.22929 1.24779 1.07075 1.19769 1.00594 0.87948 1.08861 1.18881 0.90234 0.89841 0.99680 0.89273 0.88004 0.88304 0.83107 0.84685 0.84681 0.85403 0.93010 0.84805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.92 11.40 127.77 1.46 3.38 16 2 N -0.40 -11.56 4.05 -361.03 -1.46 -13.02 16 3 N -0.26 -7.87 12.40 -45.94 -0.57 -8.44 16 4 C 0.13 3.95 8.09 86.94 0.70 4.65 16 5 Cl 0.03 0.78 29.33 -2.72 -0.08 0.70 16 6 C -0.20 -6.23 6.37 -20.23 -0.13 -6.36 16 7 C -0.04 -1.11 10.06 22.26 0.22 -0.89 16 8 C -0.15 -4.89 9.20 22.03 0.20 -4.68 16 9 C -0.03 -1.11 4.85 -20.08 -0.10 -1.20 16 10 C 0.23 9.34 2.33 43.42 0.10 9.44 16 11 H 0.05 2.02 7.40 -2.38 -0.02 2.00 16 12 N -0.83 -29.39 5.64 -174.95 -0.99 -30.37 16 13 C -0.51 -27.62 9.28 25.60 0.24 -27.38 16 14 H 0.02 1.49 7.98 -2.91 -0.02 1.46 16 15 C 0.03 1.50 5.47 84.66 0.46 1.96 16 16 N -0.95 -59.29 13.96 21.45 0.30 -58.99 16 17 Si 0.93 42.65 26.94 68.60 1.85 44.49 16 18 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 19 H -0.32 -15.42 7.11 99.48 0.71 -14.72 16 20 H -0.15 -5.94 5.16 99.48 0.51 -5.42 16 21 C -0.15 -5.07 9.55 22.14 0.21 -4.86 16 22 C 0.13 4.17 6.87 39.21 0.27 4.44 16 23 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 24 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.10 1.70 8.13 -2.38 -0.02 1.68 16 26 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 27 H 0.14 4.14 6.61 -2.91 -0.02 4.12 16 28 H 0.34 11.49 7.29 -89.70 -0.65 10.84 16 29 H 0.33 9.58 9.06 -89.70 -0.81 8.77 16 30 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 31 H 0.13 4.16 8.01 -2.91 -0.02 4.14 16 Total: -1.00 -68.60 282.32 2.22 -66.38 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: -0.48 Total: 20.76 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: 3.64 Total: -21.51 kcal Atomic # 7 Polarization: -108.11 SS G_CDS: -2.72 Total: -110.83 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.85 Total: 44.49 kcal Atomic # 17 Polarization: 0.78 SS G_CDS: -0.08 Total: 0.70 kcal Total: -68.60 2.22 -66.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260295072.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.742 kcal (2) G-P(sol) polarization free energy of solvation -68.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds