Wall clock time and date at job start Mon Mar 30 2020 06:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86791 * 119.99897 * 2 1 4 4 H 1.48506 * 109.47302 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47222 * 299.99773 * 3 2 1 6 6 H 1.48500 * 109.47423 * 59.99936 * 3 2 1 7 7 C 1.37879 * 119.99678 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99745 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00285 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47075 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47075 * 179.97438 * 10 9 7 12 12 C 1.37977 * 119.92448 * 265.01982 * 11 10 9 13 13 C 1.38367 * 120.35867 * 179.97438 * 12 11 10 14 14 Cl 1.73602 * 120.10074 * 179.97438 * 13 12 11 15 15 C 1.38540 * 119.79742 * 0.02562 * 13 12 11 16 16 C 1.37635 * 119.90422 * 359.97438 * 15 13 12 17 17 C 1.38940 * 120.81999 * 0.02562 * 16 15 13 18 18 N 1.39580 * 110.21078 * 179.97438 * 17 16 15 19 19 C 1.34367 * 112.24381 * 359.97438 * 18 17 16 20 20 O 1.21287 * 126.43966 * 180.02562 * 19 18 17 21 21 C 1.51132 * 132.83810 * 179.97438 * 16 15 13 22 22 H 0.96994 * 120.00199 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47022 * 59.99985 * 9 7 2 24 24 H 1.08997 * 109.46765 * 300.00301 * 9 7 2 25 25 H 1.08998 * 109.47230 * 60.00085 * 10 9 7 26 26 H 1.08996 * 109.47426 * 300.00335 * 10 9 7 27 27 H 1.07994 * 119.82432 * 0.02562 * 12 11 10 28 28 H 1.08000 * 120.04702 * 180.27019 * 15 13 12 29 29 H 0.96996 * 123.87908 * 179.97438 * 18 17 16 30 30 H 1.09000 * 110.51307 * 298.67484 * 21 16 15 31 31 H 1.09006 * 110.50642 * 61.24083 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4917 -4.9672 0.0001 12 6 1.2378 -5.6148 1.1917 13 6 0.5464 -6.8133 1.2028 14 17 0.2312 -7.6228 2.7058 15 6 0.1072 -7.3658 0.0106 16 6 0.3597 -6.7208 -1.1787 17 6 1.0530 -5.5169 -1.2025 18 7 1.1841 -5.0617 -2.5154 19 6 0.6140 -5.8951 -3.4020 20 8 0.5770 -5.7508 -4.6057 21 6 0.0265 -7.0480 -2.6161 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 2.8719 -3.6044 0.8894 26 1 2.8719 -3.6044 -0.8904 27 1 1.5800 -5.1837 2.1208 28 1 -0.4367 -8.2988 0.0149 29 1 1.6349 -4.2384 -2.7598 30 1 0.4925 -7.9879 -2.9118 31 1 -1.0534 -7.0976 -2.7559 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260298854.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:38 Heat of formation + Delta-G solvation = -29.296855 kcal Electronic energy + Delta-G solvation = -17064.089336 eV Core-core repulsion = 14142.469704 eV Total energy + Delta-G solvation = -2921.619633 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.41432 -38.56221 -36.65738 -35.41275 -34.40912 -32.60711 -30.65619 -28.73612 -28.01026 -25.24555 -22.37459 -21.84074 -21.06291 -20.21502 -17.77602 -16.76826 -16.45214 -15.98137 -15.87985 -15.00841 -14.55824 -14.06226 -13.63341 -13.46533 -13.25345 -12.90680 -12.77452 -12.46620 -12.17263 -11.91427 -11.51489 -11.18593 -11.00828 -10.86952 -10.55581 -10.31917 -10.17962 -10.03378 -9.77508 -9.22483 -8.60724 -8.45532 -7.79215 -6.09639 -4.13917 1.05783 1.30131 2.17079 2.46883 3.12672 3.25548 3.33724 3.36730 3.70019 4.14433 4.32884 4.38204 4.79778 5.14513 5.16793 5.26447 5.26880 5.33165 5.54489 5.79896 5.93063 6.10149 6.20205 6.39239 6.44935 6.58924 6.77496 6.88623 7.01736 7.53210 7.62337 7.87892 8.01664 8.26925 8.92993 9.51486 11.01129 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.015674 B = 0.005912 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.935232 B = 4735.030930 C = 6189.715853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.029 3.971 10 C -0.081 4.081 11 C -0.061 4.061 12 C -0.077 4.077 13 C -0.052 4.052 14 Cl -0.074 7.074 15 C -0.074 4.074 16 C -0.136 4.136 17 C 0.149 3.851 18 N -0.650 5.650 19 C 0.528 3.472 20 O -0.511 6.511 21 C -0.110 4.110 22 H 0.261 0.739 23 H 0.016 0.984 24 H 0.021 0.979 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.141 0.859 28 H 0.134 0.866 29 H 0.420 0.580 30 H 0.122 0.878 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.703 -15.970 1.019 16.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.076 0.924 9 C -0.008 4.008 10 C -0.118 4.118 11 C -0.064 4.064 12 C -0.097 4.097 13 C -0.079 4.079 14 Cl -0.046 7.046 15 C -0.093 4.093 16 C -0.139 4.139 17 C 0.051 3.949 18 N -0.292 5.292 19 C 0.316 3.684 20 O -0.386 6.386 21 C -0.149 4.149 22 H 0.071 0.929 23 H 0.034 0.966 24 H 0.039 0.961 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.159 0.841 28 H 0.152 0.848 29 H 0.260 0.740 30 H 0.140 0.860 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.447 -15.930 0.417 15.941 hybrid contribution 0.522 1.395 0.156 1.498 sum 0.969 -14.534 0.572 14.578 Atomic orbital electron populations 1.69971 1.06086 1.26717 1.50266 1.25022 0.94839 0.99346 0.95080 0.86531 0.80094 0.83686 0.77677 1.19679 1.20974 1.20921 1.21235 0.93089 0.90777 1.51344 0.92439 1.19100 0.93546 0.90407 0.97725 1.20860 0.98448 0.90517 1.01970 1.19666 0.99825 0.97680 0.89192 1.20732 0.97811 0.92877 0.98239 1.20593 1.04604 0.96009 0.86717 1.98350 1.94724 1.79151 1.32341 1.19865 1.00486 1.00196 0.88802 1.19590 1.03495 0.96308 0.94488 1.18012 0.98063 0.93860 0.84952 1.43765 1.54633 1.25555 1.05267 1.20543 0.77399 0.84157 0.86307 1.90803 1.58853 1.76627 1.12324 1.21014 1.04132 0.99185 0.90611 0.92901 0.96587 0.96093 0.91236 0.92204 0.84139 0.84770 0.74015 0.86027 0.85880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.53 -14.10 9.11 -34.44 -0.31 -14.42 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.70 4.95 -27.89 -0.14 0.57 16 10 C -0.08 -1.49 5.21 -27.89 -0.15 -1.63 16 11 C -0.06 -0.97 5.16 -104.32 -0.54 -1.51 16 12 C -0.08 -1.12 9.43 -39.63 -0.37 -1.50 16 13 C -0.05 -0.67 6.33 -39.42 -0.25 -0.92 16 14 Cl -0.07 -0.87 28.96 -51.86 -1.50 -2.37 16 15 C -0.07 -0.87 9.83 -39.69 -0.39 -1.26 16 16 C -0.14 -1.71 6.35 -104.37 -0.66 -2.38 16 17 C 0.15 2.24 6.82 -83.67 -0.57 1.67 16 18 N -0.65 -9.79 5.84 -9.69 -0.06 -9.85 16 19 C 0.53 7.72 8.71 -10.83 -0.09 7.63 16 20 O -0.51 -9.01 18.03 5.55 0.10 -8.91 16 21 C -0.11 -1.19 6.88 -28.48 -0.20 -1.39 16 22 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 23 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 1.23 8.05 -51.93 -0.42 0.81 16 26 H 0.06 1.06 7.85 -51.93 -0.41 0.65 16 27 H 0.14 1.93 8.06 -52.49 -0.42 1.50 16 28 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.42 6.41 8.66 -40.82 -0.35 6.05 16 30 H 0.12 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.12 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 290.50 15.07 4.38 4.38 Total: -1.00 -30.48 290.50 -8.39 -38.87 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -3.26 Total: 0.84 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -3.77 Total: -13.61 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.68 Total: -35.22 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.10 Total: -8.91 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.50 Total: -2.37 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.48 -8.39 -38.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260298854.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.573 kcal (2) G-P(sol) polarization free energy of solvation -30.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds