Wall clock time and date at job start Mon Mar 30 2020 06:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86791 * 119.99897 * 2 1 4 4 H 1.48506 * 109.47302 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47222 * 299.99773 * 3 2 1 6 6 H 1.48500 * 109.47423 * 59.99936 * 3 2 1 7 7 C 1.37879 * 119.99678 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99745 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00285 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47075 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47075 * 179.97438 * 10 9 7 12 12 C 1.37977 * 119.92448 * 265.01982 * 11 10 9 13 13 C 1.38367 * 120.35867 * 179.97438 * 12 11 10 14 14 Cl 1.73602 * 120.10074 * 179.97438 * 13 12 11 15 15 C 1.38540 * 119.79742 * 0.02562 * 13 12 11 16 16 C 1.37635 * 119.90422 * 359.97438 * 15 13 12 17 17 C 1.38940 * 120.81999 * 0.02562 * 16 15 13 18 18 N 1.39580 * 110.21078 * 179.97438 * 17 16 15 19 19 C 1.34367 * 112.24381 * 359.97438 * 18 17 16 20 20 O 1.21287 * 126.43966 * 180.02562 * 19 18 17 21 21 C 1.51132 * 132.83810 * 179.97438 * 16 15 13 22 22 H 0.96994 * 120.00199 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47022 * 59.99985 * 9 7 2 24 24 H 1.08997 * 109.46765 * 300.00301 * 9 7 2 25 25 H 1.08998 * 109.47230 * 60.00085 * 10 9 7 26 26 H 1.08996 * 109.47426 * 300.00335 * 10 9 7 27 27 H 1.07994 * 119.82432 * 0.02562 * 12 11 10 28 28 H 1.08000 * 120.04702 * 180.27019 * 15 13 12 29 29 H 0.96996 * 123.87908 * 179.97438 * 18 17 16 30 30 H 1.09000 * 110.51307 * 298.67484 * 21 16 15 31 31 H 1.09006 * 110.50642 * 61.24083 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4917 -4.9672 0.0001 12 6 1.2378 -5.6148 1.1917 13 6 0.5464 -6.8133 1.2028 14 17 0.2312 -7.6228 2.7058 15 6 0.1072 -7.3658 0.0106 16 6 0.3597 -6.7208 -1.1787 17 6 1.0530 -5.5169 -1.2025 18 7 1.1841 -5.0617 -2.5154 19 6 0.6140 -5.8951 -3.4020 20 8 0.5770 -5.7508 -4.6057 21 6 0.0265 -7.0480 -2.6161 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 2.8719 -3.6044 0.8894 26 1 2.8719 -3.6044 -0.8904 27 1 1.5800 -5.1837 2.1208 28 1 -0.4367 -8.2988 0.0149 29 1 1.6349 -4.2384 -2.7598 30 1 0.4925 -7.9879 -2.9118 31 1 -1.0534 -7.0976 -2.7559 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260298854.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:37 Heat of formation + Delta-G solvation = -47.405134 kcal Electronic energy + Delta-G solvation = -17064.874570 eV Core-core repulsion = 14142.469704 eV Total energy + Delta-G solvation = -2922.404866 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.51829 -39.72246 -37.68937 -36.67189 -35.90849 -34.32171 -32.00221 -30.15027 -29.05065 -26.99932 -23.87310 -23.07129 -22.18581 -21.58528 -18.92780 -18.53158 -17.84289 -17.07485 -17.00306 -16.53183 -16.16376 -15.21095 -14.95494 -14.68315 -14.60424 -14.29768 -14.04380 -13.65476 -13.53392 -13.23875 -12.97506 -12.85082 -12.55648 -12.31436 -11.91234 -11.79265 -11.63361 -11.36217 -11.31968 -11.15936 -10.58586 -9.74222 -8.93609 -8.22014 -6.33600 -0.02717 0.22840 1.16328 1.36469 1.38739 1.40002 1.52179 2.00430 2.38721 2.60098 3.11816 3.12424 3.34641 3.75773 4.04702 4.11726 4.22396 4.43141 4.51529 4.69172 4.79463 4.81726 5.01206 5.10386 5.11317 5.23531 5.46469 5.49071 5.63949 5.75833 5.81373 5.88928 6.19641 6.83873 6.85569 7.36469 8.89205 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.015674 B = 0.005912 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.935232 B = 4735.030930 C = 6189.715853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.961 3.039 4 H -0.260 1.260 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.038 3.962 10 C -0.066 4.066 11 C -0.084 4.084 12 C -0.085 4.085 13 C -0.054 4.054 14 Cl -0.060 7.060 15 C -0.059 4.059 16 C -0.126 4.126 17 C 0.129 3.871 18 N -0.657 5.657 19 C 0.521 3.479 20 O -0.549 6.549 21 C -0.096 4.096 22 H 0.263 0.737 23 H -0.010 1.010 24 H -0.007 1.007 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.142 0.858 28 H 0.171 0.829 29 H 0.413 0.587 30 H 0.158 0.842 31 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.840 -17.734 1.367 17.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.786 3.214 4 H -0.184 1.184 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.082 0.918 9 C 0.001 3.999 10 C -0.103 4.103 11 C -0.087 4.087 12 C -0.104 4.104 13 C -0.082 4.082 14 Cl -0.031 7.031 15 C -0.077 4.077 16 C -0.129 4.129 17 C 0.032 3.968 18 N -0.298 5.298 19 C 0.311 3.689 20 O -0.427 6.427 21 C -0.134 4.134 22 H 0.071 0.929 23 H 0.008 0.992 24 H 0.011 0.989 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.159 0.841 28 H 0.189 0.811 29 H 0.250 0.750 30 H 0.175 0.825 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.598 -17.715 0.792 17.743 hybrid contribution 0.456 1.881 0.103 1.938 sum 1.054 -15.834 0.895 15.894 Atomic orbital electron populations 1.70103 1.07799 1.27662 1.51644 1.25936 0.95665 1.03255 0.94771 0.85450 0.79246 0.79037 0.77640 1.18390 1.20747 1.20458 1.21720 0.93664 0.92108 1.50453 0.91815 1.18905 0.93892 0.92125 0.94984 1.20535 0.97327 0.90121 1.02331 1.19429 1.01529 0.97217 0.90496 1.20784 0.98219 0.93693 0.97693 1.20679 1.04057 0.95521 0.87919 1.98359 1.94552 1.78631 1.31575 1.20227 0.99046 1.00866 0.87606 1.19844 1.02231 0.95011 0.95838 1.18196 0.99062 0.95139 0.84427 1.43953 1.54593 1.25503 1.05774 1.21221 0.76805 0.84895 0.85955 1.90779 1.60389 1.77657 1.13918 1.21096 1.05557 0.98562 0.88184 0.92851 0.99205 0.98884 0.90735 0.91906 0.84068 0.81127 0.74958 0.82494 0.83304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.02 13.29 21.45 0.28 -55.74 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.96 43.56 29.54 68.60 2.03 45.59 16 4 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.54 -29.63 9.11 25.60 0.23 -29.40 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.04 1.91 4.95 29.85 0.15 2.06 16 10 C -0.07 -2.49 5.21 29.85 0.16 -2.34 16 11 C -0.08 -2.70 5.16 -19.67 -0.10 -2.80 16 12 C -0.08 -2.40 9.43 22.24 0.21 -2.19 16 13 C -0.05 -1.28 6.33 22.37 0.14 -1.14 16 14 Cl -0.06 -1.26 28.96 -2.72 -0.08 -1.34 16 15 C -0.06 -1.16 9.83 22.20 0.22 -0.95 16 16 C -0.13 -2.84 6.35 -19.70 -0.13 -2.96 16 17 C 0.13 3.81 6.82 38.33 0.26 4.07 16 18 N -0.66 -19.97 5.84 -303.19 -1.77 -21.74 16 19 C 0.52 14.80 8.71 87.94 0.77 15.56 16 20 O -0.55 -19.34 18.03 -3.05 -0.06 -19.40 16 21 C -0.10 -1.75 6.88 29.46 0.20 -1.55 16 22 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 23 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 24 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 25 H 0.07 2.69 8.05 -2.39 -0.02 2.67 16 26 H 0.06 2.29 7.85 -2.39 -0.02 2.27 16 27 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 28 H 0.17 2.18 8.06 -2.91 -0.02 2.15 16 29 H 0.41 13.20 8.66 -92.71 -0.80 12.40 16 30 H 0.16 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.15 2.09 8.14 -2.38 -0.02 2.07 16 Total: -1.00 -67.38 290.50 3.34 -64.04 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 0.36 Total: 9.66 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: 2.57 Total: -21.07 kcal Atomic # 7 Polarization: -75.99 SS G_CDS: -1.49 Total: -77.48 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.06 Total: -19.40 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.08 Total: -1.34 kcal Total: -67.38 3.34 -64.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260298854.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.637 kcal (2) G-P(sol) polarization free energy of solvation -67.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds