Wall clock time and date at job start Mon Mar 30 2020 06:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 11 11 N 1.46898 * 109.47058 * 60.00265 * 9 7 2 12 12 C 1.50703 * 109.47148 * 179.97438 * 9 7 2 13 13 C 1.38299 * 119.92308 * 279.73026 * 12 9 7 14 14 C 1.38075 * 120.08271 * 179.72526 * 13 12 9 15 15 C 1.38977 * 119.91679 * 0.54079 * 14 13 12 16 16 S 1.76206 * 120.07680 * 179.74795 * 15 14 13 17 17 C 1.81401 * 103.00264 * 359.97438 * 16 15 14 18 18 C 1.54028 * 113.81475 * 273.50578 * 17 16 15 19 19 O 1.44450 * 85.42439 * 223.23750 * 18 17 16 20 20 C 1.44173 * 93.38005 * 24.08699 * 19 18 17 21 21 C 1.38968 * 119.84189 * 359.73262 * 15 14 13 22 22 C 1.38088 * 119.91768 * 359.97438 * 21 15 14 23 23 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 24 24 H 1.00892 * 111.00332 * 60.00049 * 11 9 7 25 25 H 1.00905 * 110.99665 * 183.95824 * 11 9 7 26 26 H 1.08007 * 119.95724 * 359.97438 * 13 12 9 27 27 H 1.08003 * 120.04267 * 180.26888 * 14 13 12 28 28 H 1.09002 * 112.99695 * 45.33120 * 17 16 15 29 29 H 1.09001 * 113.86860 * 337.34336 * 18 17 16 30 30 H 1.09004 * 113.86531 * 109.05129 * 18 17 16 31 31 H 1.08997 * 113.86661 * 221.76930 * 20 19 18 32 32 H 1.09009 * 113.98190 * 90.07500 * 20 19 18 33 33 H 1.07997 * 120.04078 * 180.02562 * 21 15 14 34 34 H 1.08001 * 119.95624 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5566 0.8903 11 7 0.4071 -2.5772 -1.1992 12 6 2.2304 -3.6445 0.0005 13 6 2.8327 -4.0372 -1.1809 14 6 3.7348 -5.0826 -1.1837 15 6 4.0288 -5.7477 0.0007 16 16 5.1743 -7.0866 0.0007 17 6 5.6724 -7.1976 -1.7400 18 6 4.7387 -8.0702 -2.5997 19 8 5.9534 -8.6052 -3.1695 20 6 6.7454 -8.2685 -2.0128 21 6 3.4174 -5.3540 1.1849 22 6 2.5208 -4.3038 1.1812 23 1 -0.4850 -0.8401 -0.0004 24 1 0.9653 -2.5260 -2.0381 25 1 -0.1569 -3.4139 -1.1907 26 1 2.6002 -3.5230 -2.1017 27 1 4.2080 -5.3859 -2.1059 28 1 5.8975 -6.2266 -2.1813 29 1 4.1629 -8.7970 -2.0267 30 1 4.1313 -7.5034 -3.3054 31 1 7.7262 -7.8587 -2.2540 32 1 6.7853 -9.0549 -1.2590 33 1 3.6438 -5.8683 2.1072 34 1 2.0456 -3.9970 2.1012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260320044.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:26 Heat of formation + Delta-G solvation = 12.937477 kcal Electronic energy + Delta-G solvation = -17174.599748 eV Core-core repulsion = 14392.688335 eV Total energy + Delta-G solvation = -2781.911414 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.45416 -38.92111 -34.97277 -31.62978 -31.05129 -29.91396 -29.44321 -26.97645 -25.70586 -23.16242 -22.36516 -21.17837 -20.35218 -17.77667 -17.24537 -16.85134 -16.47668 -16.01449 -15.33944 -14.88510 -14.26048 -13.90437 -13.75673 -13.54647 -13.24334 -13.01676 -12.96393 -12.26522 -12.14202 -11.98496 -11.54377 -10.94037 -10.85930 -10.72910 -10.28705 -10.18787 -10.13906 -10.04928 -9.50151 -8.65440 -8.58776 -8.36011 -7.61019 -7.19279 -6.22516 -4.06695 1.42013 1.60401 1.72174 2.29150 3.23374 3.45643 3.46550 3.65537 3.69082 4.10296 4.51073 4.57844 4.69653 4.92821 5.05827 5.13507 5.18172 5.39314 5.40258 5.57209 5.62860 5.65656 5.77829 5.85033 6.01108 6.18950 6.28777 6.54050 6.76426 6.83869 7.29528 7.30850 7.91156 8.22578 8.59102 8.69316 9.00133 9.77005 11.17055 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.032515 B = 0.004194 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.928745 B = 6674.308879 C = 6742.567928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.039 3.961 3 Si 1.064 2.936 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.609 4.609 8 H 0.046 0.954 9 C 0.236 3.764 10 H 0.040 0.960 11 N -0.829 5.829 12 C -0.061 4.061 13 C -0.104 4.104 14 C -0.128 4.128 15 C -0.109 4.109 16 S -0.127 6.127 17 C -0.152 4.152 18 C 0.052 3.948 19 O -0.375 6.375 20 C 0.069 3.931 21 C -0.097 4.097 22 C -0.106 4.106 23 H 0.290 0.710 24 H 0.326 0.674 25 H 0.302 0.698 26 H 0.121 0.879 27 H 0.113 0.887 28 H 0.123 0.877 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.650 -15.235 -2.324 18.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.171 4.171 3 Si 0.893 3.107 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.648 4.648 8 H 0.064 0.936 9 C 0.127 3.873 10 H 0.057 0.943 11 N -0.357 5.357 12 C -0.065 4.065 13 C -0.124 4.124 14 C -0.151 4.151 15 C -0.221 4.221 16 S 0.115 5.885 17 C -0.281 4.281 18 C -0.027 4.027 19 O -0.294 6.294 20 C -0.010 4.010 21 C -0.120 4.120 22 C -0.126 4.126 23 H 0.102 0.898 24 H 0.139 0.861 25 H 0.113 0.887 26 H 0.139 0.861 27 H 0.131 0.869 28 H 0.141 0.859 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.109 0.891 33 H 0.137 0.863 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.587 -13.771 -1.427 16.840 hybrid contribution 0.429 -1.511 -1.045 1.887 sum 10.016 -15.283 -2.472 18.439 Atomic orbital electron populations 1.70561 1.06825 1.32798 1.42093 1.25631 0.96582 1.01822 0.93057 0.83643 0.74940 0.75767 0.76387 1.20825 1.21629 1.21653 1.21652 0.93367 0.90334 1.59448 0.93580 1.18407 0.88091 0.90534 0.90303 0.94263 1.59450 1.28578 1.42358 1.05286 1.21612 0.97128 0.95669 0.92134 1.20865 0.96644 0.96118 0.98771 1.21002 1.00248 0.97970 0.95916 1.21312 1.02956 1.00762 0.97057 1.85212 1.52137 1.40143 1.10968 1.26901 1.00515 1.04193 0.96513 1.24420 0.88961 0.94458 0.94879 1.89772 1.20534 1.84158 1.34912 1.23763 0.95477 0.94055 0.87657 1.20667 0.97490 0.97964 0.95859 1.21057 0.97983 0.95035 0.98535 0.89761 0.86100 0.88703 0.86126 0.86946 0.85916 0.88577 0.88423 0.87941 0.89129 0.86317 0.85820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.51 55.43 0.75 -25.61 16 2 C 0.04 1.10 5.39 -17.82 -0.10 1.00 16 3 Si 1.06 24.95 29.90 -169.99 -5.08 19.87 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.61 -16.58 8.70 -34.44 -0.30 -16.88 16 8 H 0.05 1.28 7.74 -52.49 -0.41 0.88 16 9 C 0.24 5.60 2.47 -70.02 -0.17 5.43 16 10 H 0.04 1.01 7.87 -51.93 -0.41 0.60 16 11 N -0.83 -18.32 7.61 -6.65 -0.05 -18.37 16 12 C -0.06 -1.25 4.89 -104.57 -0.51 -1.76 16 13 C -0.10 -1.90 9.28 -39.62 -0.37 -2.27 16 14 C -0.13 -2.03 9.33 -39.37 -0.37 -2.40 16 15 C -0.11 -1.70 6.11 -39.04 -0.24 -1.94 16 16 S -0.13 -1.59 21.74 -107.50 -2.34 -3.93 16 17 C -0.15 -1.57 3.20 -25.65 -0.08 -1.65 16 18 C 0.05 0.51 8.68 37.64 0.33 0.84 16 19 O -0.37 -4.14 12.46 -35.23 -0.44 -4.58 16 20 C 0.07 0.60 8.82 37.64 0.33 0.93 16 21 C -0.10 -1.58 9.79 -39.37 -0.39 -1.97 16 22 C -0.11 -1.96 9.66 -39.61 -0.38 -2.34 16 23 H 0.29 8.56 6.39 -40.82 -0.26 8.30 16 24 H 0.33 6.91 7.32 -39.30 -0.29 6.63 16 25 H 0.30 5.88 9.06 -39.29 -0.36 5.53 16 26 H 0.12 2.15 6.64 -52.48 -0.35 1.80 16 27 H 0.11 1.51 5.64 -52.48 -0.30 1.21 16 28 H 0.12 1.29 6.97 -51.93 -0.36 0.93 16 29 H 0.10 0.89 8.10 -51.93 -0.42 0.47 16 30 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 0.70 8.10 -51.92 -0.42 0.28 16 33 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.12 2.18 8.03 -52.49 -0.42 1.76 16 LS Contribution 299.07 15.07 4.51 4.51 Total: -1.00 -30.31 299.07 -8.95 -39.26 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -4.05 Total: 11.85 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: -2.24 Total: -22.99 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 0.70 Total: -43.98 kcal Atomic # 8 Polarization: -4.14 SS G_CDS: -0.44 Total: -4.58 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.08 Total: 19.87 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.34 Total: -3.93 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.31 -8.95 -39.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260320044.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.198 kcal (2) G-P(sol) polarization free energy of solvation -30.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds