Wall clock time and date at job start Mon Mar 30 2020 06:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 11 11 N 1.46898 * 109.47058 * 60.00265 * 9 7 2 12 12 C 1.50703 * 109.47148 * 179.97438 * 9 7 2 13 13 C 1.38299 * 119.92308 * 279.73026 * 12 9 7 14 14 C 1.38075 * 120.08271 * 179.72526 * 13 12 9 15 15 C 1.38977 * 119.91679 * 0.54079 * 14 13 12 16 16 S 1.76206 * 120.07680 * 179.74795 * 15 14 13 17 17 C 1.81401 * 103.00264 * 359.97438 * 16 15 14 18 18 C 1.54028 * 113.81475 * 273.50578 * 17 16 15 19 19 O 1.44450 * 85.42439 * 223.23750 * 18 17 16 20 20 C 1.44173 * 93.38005 * 24.08699 * 19 18 17 21 21 C 1.38968 * 119.84189 * 359.73262 * 15 14 13 22 22 C 1.38088 * 119.91768 * 359.97438 * 21 15 14 23 23 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 24 24 H 1.00892 * 111.00332 * 60.00049 * 11 9 7 25 25 H 1.00905 * 110.99665 * 183.95824 * 11 9 7 26 26 H 1.08007 * 119.95724 * 359.97438 * 13 12 9 27 27 H 1.08003 * 120.04267 * 180.26888 * 14 13 12 28 28 H 1.09002 * 112.99695 * 45.33120 * 17 16 15 29 29 H 1.09001 * 113.86860 * 337.34336 * 18 17 16 30 30 H 1.09004 * 113.86531 * 109.05129 * 18 17 16 31 31 H 1.08997 * 113.86661 * 221.76930 * 20 19 18 32 32 H 1.09009 * 113.98190 * 90.07500 * 20 19 18 33 33 H 1.07997 * 120.04078 * 180.02562 * 21 15 14 34 34 H 1.08001 * 119.95624 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5566 0.8903 11 7 0.4071 -2.5772 -1.1992 12 6 2.2304 -3.6445 0.0005 13 6 2.8327 -4.0372 -1.1809 14 6 3.7348 -5.0826 -1.1837 15 6 4.0288 -5.7477 0.0007 16 16 5.1743 -7.0866 0.0007 17 6 5.6724 -7.1976 -1.7400 18 6 4.7387 -8.0702 -2.5997 19 8 5.9534 -8.6052 -3.1695 20 6 6.7454 -8.2685 -2.0128 21 6 3.4174 -5.3540 1.1849 22 6 2.5208 -4.3038 1.1812 23 1 -0.4850 -0.8401 -0.0004 24 1 0.9653 -2.5260 -2.0381 25 1 -0.1569 -3.4139 -1.1907 26 1 2.6002 -3.5230 -2.1017 27 1 4.2080 -5.3859 -2.1059 28 1 5.8975 -6.2266 -2.1813 29 1 4.1629 -8.7970 -2.0267 30 1 4.1313 -7.5034 -3.3054 31 1 7.7262 -7.8587 -2.2540 32 1 6.7853 -9.0549 -1.2590 33 1 3.6438 -5.8683 2.1072 34 1 2.0456 -3.9970 2.1012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260320044.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:26 Heat of formation + Delta-G solvation = -6.722236 kcal Electronic energy + Delta-G solvation = -17175.452258 eV Core-core repulsion = 14392.688335 eV Total energy + Delta-G solvation = -2782.763923 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.21572 -40.33831 -36.75578 -33.57575 -32.30444 -31.02506 -30.78177 -27.77669 -27.55393 -24.85253 -23.70521 -22.24802 -21.78839 -18.94625 -18.80163 -18.06350 -17.36094 -16.91192 -16.82489 -16.41443 -15.79675 -15.55791 -15.19935 -14.89078 -14.43579 -14.35652 -13.91425 -13.82878 -13.66651 -13.17343 -12.78339 -12.58541 -12.41148 -12.05619 -11.94977 -11.80223 -11.21687 -11.09302 -10.88012 -10.51266 -10.28572 -9.99343 -9.37716 -8.45440 -8.30110 -6.26695 0.22930 0.36547 0.42845 1.24845 1.55264 1.62130 1.81545 2.50188 2.59186 2.74020 2.92588 3.30047 3.71119 3.84106 3.94064 4.00263 4.12588 4.19286 4.25905 4.43189 4.45210 4.48871 4.69247 4.78625 4.84451 4.88205 4.94051 5.12340 5.19504 5.35775 5.73916 5.85838 5.95466 6.20018 6.65278 6.75925 7.01929 7.64451 8.96557 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.032515 B = 0.004194 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.928745 B = 6674.308879 C = 6742.567928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.009 4.009 3 Si 1.108 2.892 4 H -0.285 1.285 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.616 4.616 8 H 0.034 0.966 9 C 0.240 3.760 10 H 0.009 0.991 11 N -0.835 5.835 12 C -0.091 4.091 13 C -0.110 4.110 14 C -0.124 4.124 15 C -0.109 4.109 16 S -0.107 6.107 17 C -0.155 4.155 18 C 0.051 3.949 19 O -0.393 6.393 20 C 0.073 3.927 21 C -0.098 4.098 22 C -0.118 4.118 23 H 0.279 0.721 24 H 0.331 0.669 25 H 0.318 0.682 26 H 0.119 0.881 27 H 0.140 0.860 28 H 0.124 0.876 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.122 0.878 32 H 0.102 0.898 33 H 0.141 0.859 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.789 -16.676 -2.912 20.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.213 4.213 3 Si 0.932 3.068 4 H -0.211 1.211 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.654 4.654 8 H 0.052 0.948 9 C 0.131 3.869 10 H 0.027 0.973 11 N -0.364 5.364 12 C -0.095 4.095 13 C -0.130 4.130 14 C -0.147 4.147 15 C -0.221 4.221 16 S 0.136 5.864 17 C -0.284 4.284 18 C -0.027 4.027 19 O -0.313 6.313 20 C -0.004 4.004 21 C -0.121 4.121 22 C -0.138 4.138 23 H 0.090 0.910 24 H 0.144 0.856 25 H 0.130 0.870 26 H 0.137 0.863 27 H 0.158 0.842 28 H 0.142 0.858 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.140 0.860 32 H 0.120 0.880 33 H 0.158 0.842 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.741 -15.244 -2.013 19.346 hybrid contribution -0.143 -1.250 -0.877 1.534 sum 11.598 -16.495 -2.889 20.370 Atomic orbital electron populations 1.70674 1.07711 1.32176 1.44771 1.26933 0.96683 1.05335 0.92331 0.83054 0.74159 0.72224 0.77412 1.21061 1.20209 1.20128 1.21947 0.92993 0.92150 1.58357 0.94753 1.18057 0.88349 0.90952 0.89578 0.97341 1.59203 1.28780 1.43538 1.04907 1.21266 0.98294 0.96034 0.93897 1.20890 0.97227 0.97013 0.97875 1.21231 0.99291 0.96873 0.97267 1.21679 1.02673 1.01219 0.96527 1.85201 1.50452 1.37711 1.13030 1.27094 1.01628 1.04868 0.94803 1.24510 0.88856 0.94483 0.94898 1.89770 1.21238 1.84342 1.35934 1.23959 0.95705 0.93629 0.87134 1.20875 0.96722 0.97235 0.97270 1.21107 0.98845 0.95963 0.97870 0.90968 0.85557 0.87041 0.86266 0.84225 0.85761 0.87991 0.87728 0.85987 0.87983 0.84152 0.86184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.72 13.51 21.45 0.29 -55.43 16 2 C -0.01 -0.51 5.39 84.65 0.46 -0.05 16 3 Si 1.11 50.51 29.90 68.60 2.05 52.56 16 4 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.62 -34.25 8.70 25.60 0.22 -34.03 16 8 H 0.03 1.94 7.74 -2.91 -0.02 1.92 16 9 C 0.24 11.81 2.47 43.42 0.11 11.91 16 10 H 0.01 0.47 7.87 -2.39 -0.02 0.45 16 11 N -0.84 -37.86 7.61 -174.96 -1.33 -39.19 16 12 C -0.09 -3.74 4.89 -19.83 -0.10 -3.83 16 13 C -0.11 -3.96 9.28 22.25 0.21 -3.75 16 14 C -0.12 -3.66 9.33 22.41 0.21 -3.45 16 15 C -0.11 -3.14 6.11 22.62 0.14 -3.00 16 16 S -0.11 -2.34 21.74 -56.49 -1.23 -3.56 16 17 C -0.15 -2.67 3.20 31.29 0.10 -2.57 16 18 C 0.05 0.85 8.68 72.29 0.63 1.48 16 19 O -0.39 -7.53 12.46 -148.98 -1.86 -9.39 16 20 C 0.07 1.03 8.82 72.30 0.64 1.67 16 21 C -0.10 -3.06 9.79 22.41 0.22 -2.84 16 22 C -0.12 -4.38 9.66 22.25 0.21 -4.16 16 23 H 0.28 17.05 6.39 -92.70 -0.59 16.46 16 24 H 0.33 14.27 7.32 -89.70 -0.66 13.61 16 25 H 0.32 12.65 9.06 -89.69 -0.81 11.84 16 26 H 0.12 4.22 6.64 -2.91 -0.02 4.20 16 27 H 0.14 3.31 5.64 -2.91 -0.02 3.30 16 28 H 0.12 2.16 6.97 -2.39 -0.02 2.15 16 29 H 0.10 1.59 8.10 -2.39 -0.02 1.57 16 30 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.10 1.21 8.10 -2.38 -0.02 1.19 16 33 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 34 H 0.12 4.39 8.03 -2.91 -0.02 4.37 16 Total: -1.00 -65.51 299.07 0.81 -64.70 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: -0.16 Total: 32.94 kcal Atomic # 6 Polarization: -45.67 SS G_CDS: 3.04 Total: -42.63 kcal Atomic # 7 Polarization: -93.58 SS G_CDS: -1.04 Total: -94.62 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -1.86 Total: -9.39 kcal Atomic # 14 Polarization: 50.51 SS G_CDS: 2.05 Total: 52.56 kcal Atomic # 16 Polarization: -2.34 SS G_CDS: -1.23 Total: -3.56 kcal Total: -65.51 0.81 -64.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260320044.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.978 kcal (2) G-P(sol) polarization free energy of solvation -65.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds