Wall clock time and date at job start Mon Mar 30 2020 06:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.08002 * 119.99706 * 0.27353 * 7 2 1 9 9 C 1.50699 * 119.99783 * 180.27665 * 7 2 1 10 10 H 1.09005 * 109.47370 * 60.00470 * 9 7 2 11 11 N 1.46891 * 109.47265 * 299.99906 * 9 7 2 12 12 C 1.50701 * 109.46837 * 179.97438 * 9 7 2 13 13 C 1.38299 * 119.91779 * 79.72716 * 12 9 7 14 14 C 1.38092 * 120.08045 * 179.72388 * 13 12 9 15 15 C 1.38970 * 119.91609 * 0.55003 * 14 13 12 16 16 S 1.76200 * 120.07999 * 179.75193 * 15 14 13 17 17 C 1.81401 * 103.00051 * 359.97131 * 16 15 14 18 18 C 1.54032 * 113.81744 * 273.51218 * 17 16 15 19 19 O 1.44451 * 85.42594 * 223.23374 * 18 17 16 20 20 C 1.44177 * 93.37404 * 24.08705 * 19 18 17 21 21 C 1.38977 * 119.84111 * 359.72501 * 15 14 13 22 22 C 1.38080 * 119.92018 * 0.02562 * 21 15 14 23 23 H 0.97004 * 119.99485 * 0.02562 * 1 2 3 24 24 H 1.00898 * 111.00132 * 299.99806 * 11 9 7 25 25 H 1.00900 * 111.00439 * 63.95189 * 11 9 7 26 26 H 1.07997 * 119.96129 * 359.97438 * 13 12 9 27 27 H 1.07998 * 120.03956 * 180.27630 * 14 13 12 28 28 H 1.09001 * 112.99666 * 45.33733 * 17 16 15 29 29 H 1.08996 * 113.86584 * 337.34021 * 18 17 16 30 30 H 1.09002 * 113.86648 * 109.04691 * 18 17 16 31 31 H 1.09000 * 113.86784 * 221.76564 * 20 19 18 32 32 H 1.09002 * 113.98015 * 90.07686 * 20 19 18 33 33 H 1.07997 * 120.04034 * 180.02562 * 21 15 14 34 34 H 1.08006 * 119.96291 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 1.4644 -2.1294 0.0058 9 6 3.5114 -1.1942 0.0121 10 1 3.8711 -0.6783 0.9024 11 7 4.0062 -0.5047 -1.1869 12 6 4.0137 -2.6150 0.0182 13 6 4.0469 -3.3400 -1.1590 14 6 4.5118 -4.6403 -1.1583 15 6 4.9358 -5.2241 0.0295 16 16 5.5237 -6.8851 0.0366 17 6 5.3773 -7.3772 -1.7033 18 6 3.9893 -7.9292 -2.0789 19 8 4.7171 -8.9437 -2.8054 20 6 5.9001 -8.7965 -1.9944 21 6 4.8956 -4.4944 1.2116 22 6 4.4344 -3.1929 1.2023 23 1 -0.4849 0.8401 -0.0004 24 1 3.6862 -0.9642 -2.0262 25 1 3.7367 0.4677 -1.1820 26 1 3.7127 -2.8873 -2.0808 27 1 4.5417 -5.2043 -2.0788 28 1 5.7514 -6.6204 -2.3928 29 1 3.4236 -8.3146 -1.2307 30 1 3.4066 -7.2624 -2.7145 31 1 6.8298 -8.8160 -2.5629 32 1 5.9213 -9.4466 -1.1197 33 1 5.2247 -4.9447 2.1364 34 1 4.4032 -2.6251 2.1205 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260320047.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:28 Heat of formation + Delta-G solvation = 21.102959 kcal Electronic energy + Delta-G solvation = -17188.351337 eV Core-core repulsion = 14406.794005 eV Total energy + Delta-G solvation = -2781.557332 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.37538 -38.83343 -35.04927 -32.01467 -30.98614 -29.88608 -29.74866 -26.90303 -26.21170 -23.32462 -22.41537 -21.06996 -20.07189 -17.71269 -17.16395 -17.02963 -16.43722 -15.94101 -15.72827 -14.77772 -14.59459 -14.11323 -13.76845 -13.40077 -13.14068 -12.86986 -12.73646 -12.51357 -12.27386 -11.95922 -11.63508 -11.15223 -10.94759 -10.77154 -10.65049 -10.18342 -10.08217 -10.04149 -9.59653 -9.18000 -8.84301 -8.53907 -7.70229 -7.11136 -6.29782 -4.34135 1.49860 1.69650 1.83571 2.37147 3.08023 3.22745 3.23244 3.31455 3.76777 4.16917 4.21347 4.57911 4.77146 4.99373 5.01604 5.14897 5.22756 5.27729 5.48083 5.51221 5.65580 5.74118 5.80861 5.94006 6.02964 6.21220 6.34965 6.63838 6.70694 6.87643 7.24132 7.41696 7.43184 7.98553 8.19474 8.40655 8.77101 9.28723 10.82639 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.036663 B = 0.004311 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.525551 B = 6493.589466 C = 6747.381738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.074 3.926 3 Si 0.873 3.127 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.259 1.259 7 C -0.547 4.547 8 H 0.077 0.923 9 C 0.205 3.795 10 H 0.051 0.949 11 N -0.849 5.849 12 C -0.014 4.014 13 C -0.089 4.089 14 C -0.130 4.130 15 C -0.107 4.107 16 S -0.128 6.128 17 C -0.151 4.151 18 C 0.051 3.949 19 O -0.375 6.375 20 C 0.068 3.932 21 C -0.097 4.097 22 C -0.106 4.106 23 H 0.267 0.733 24 H 0.331 0.669 25 H 0.318 0.682 26 H 0.123 0.877 27 H 0.113 0.887 28 H 0.123 0.877 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.119 0.881 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.968 -12.521 -2.238 16.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.130 4.130 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.183 1.183 7 C -0.587 4.587 8 H 0.095 0.905 9 C 0.095 3.905 10 H 0.069 0.931 11 N -0.382 5.382 12 C -0.017 4.017 13 C -0.109 4.109 14 C -0.153 4.153 15 C -0.219 4.219 16 S 0.114 5.886 17 C -0.280 4.280 18 C -0.028 4.028 19 O -0.295 6.295 20 C -0.010 4.010 21 C -0.120 4.120 22 C -0.126 4.126 23 H 0.077 0.923 24 H 0.143 0.857 25 H 0.134 0.866 26 H 0.141 0.859 27 H 0.131 0.869 28 H 0.141 0.859 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.108 0.892 33 H 0.137 0.863 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 11.904 -13.493 -1.292 18.040 hybrid contribution -1.217 2.153 -1.075 2.696 sum 10.688 -11.341 -2.367 15.762 Atomic orbital electron populations 1.69894 1.06221 1.27280 1.49058 1.25035 0.94848 0.99038 0.94079 0.87007 0.80372 0.83802 0.78659 1.20109 1.21664 1.18340 1.21606 0.89434 0.95006 1.52638 0.90531 1.18535 0.93723 0.87391 0.90807 0.93076 1.59733 1.66912 1.05689 1.05893 1.20120 0.92443 0.96814 0.92282 1.20820 0.98492 0.92910 0.98686 1.21004 1.02167 0.96354 0.95805 1.21305 1.07212 0.96311 0.97079 1.85197 1.82405 1.10732 1.10269 1.26890 1.01021 1.02005 0.98126 1.24437 0.93407 0.88553 0.96355 1.89770 1.27053 1.61448 1.51186 1.23754 0.90989 0.91267 0.94983 1.20591 1.01218 0.94292 0.95931 1.20963 0.98932 0.94381 0.98314 0.92290 0.85704 0.86584 0.85911 0.86909 0.85920 0.88503 0.88285 0.88040 0.89183 0.86272 0.85751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.04 13.96 55.43 0.77 -25.27 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.87 20.32 24.61 -169.99 -4.18 16.14 16 4 H -0.27 -6.13 7.01 56.52 0.40 -5.73 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.26 -5.85 6.54 56.52 0.37 -5.48 16 7 C -0.55 -14.64 9.28 -34.44 -0.32 -14.96 16 8 H 0.08 2.27 7.98 -52.49 -0.42 1.85 16 9 C 0.20 4.66 2.47 -70.02 -0.17 4.48 16 10 H 0.05 1.20 7.06 -51.93 -0.37 0.83 16 11 N -0.85 -18.01 8.98 -6.65 -0.06 -18.07 16 12 C -0.01 -0.29 4.90 -104.57 -0.51 -0.80 16 13 C -0.09 -1.63 9.28 -39.61 -0.37 -2.00 16 14 C -0.13 -2.07 9.33 -39.36 -0.37 -2.44 16 15 C -0.11 -1.67 6.11 -39.04 -0.24 -1.91 16 16 S -0.13 -1.62 21.74 -107.50 -2.34 -3.96 16 17 C -0.15 -1.58 3.20 -25.66 -0.08 -1.66 16 18 C 0.05 0.54 8.68 37.64 0.33 0.87 16 19 O -0.38 -4.29 12.46 -35.23 -0.44 -4.73 16 20 C 0.07 0.61 8.82 37.64 0.33 0.94 16 21 C -0.10 -1.58 9.79 -39.37 -0.39 -1.97 16 22 C -0.11 -1.93 9.66 -39.61 -0.38 -2.31 16 23 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.33 6.60 7.34 -39.29 -0.29 6.32 16 25 H 0.32 6.89 4.30 -39.29 -0.17 6.72 16 26 H 0.12 2.17 6.67 -52.49 -0.35 1.82 16 27 H 0.11 1.51 5.64 -52.49 -0.30 1.22 16 28 H 0.12 1.26 6.97 -51.93 -0.36 0.90 16 29 H 0.10 0.98 8.10 -51.93 -0.42 0.56 16 30 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 33 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.12 2.11 8.03 -52.48 -0.42 1.69 16 LS Contribution 292.23 15.07 4.40 4.40 Total: -1.00 -29.56 292.23 -8.06 -37.63 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -3.95 Total: 13.68 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: -2.27 Total: -19.82 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 0.71 Total: -43.34 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -0.44 Total: -4.73 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.18 Total: 16.14 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.34 Total: -3.96 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.56 -8.06 -37.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260320047.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.730 kcal (2) G-P(sol) polarization free energy of solvation -29.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds