Wall clock time and date at job start Mon Mar 30 2020 06:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.08002 * 119.99706 * 0.27353 * 7 2 1 9 9 C 1.50699 * 119.99783 * 180.27665 * 7 2 1 10 10 H 1.09005 * 109.47370 * 60.00470 * 9 7 2 11 11 N 1.46891 * 109.47265 * 299.99906 * 9 7 2 12 12 C 1.50701 * 109.46837 * 179.97438 * 9 7 2 13 13 C 1.38299 * 119.91779 * 79.72716 * 12 9 7 14 14 C 1.38092 * 120.08045 * 179.72388 * 13 12 9 15 15 C 1.38970 * 119.91609 * 0.55003 * 14 13 12 16 16 S 1.76200 * 120.07999 * 179.75193 * 15 14 13 17 17 C 1.81401 * 103.00051 * 359.97131 * 16 15 14 18 18 C 1.54032 * 113.81744 * 273.51218 * 17 16 15 19 19 O 1.44451 * 85.42594 * 223.23374 * 18 17 16 20 20 C 1.44177 * 93.37404 * 24.08705 * 19 18 17 21 21 C 1.38977 * 119.84111 * 359.72501 * 15 14 13 22 22 C 1.38080 * 119.92018 * 0.02562 * 21 15 14 23 23 H 0.97004 * 119.99485 * 0.02562 * 1 2 3 24 24 H 1.00898 * 111.00132 * 299.99806 * 11 9 7 25 25 H 1.00900 * 111.00439 * 63.95189 * 11 9 7 26 26 H 1.07997 * 119.96129 * 359.97438 * 13 12 9 27 27 H 1.07998 * 120.03956 * 180.27630 * 14 13 12 28 28 H 1.09001 * 112.99666 * 45.33733 * 17 16 15 29 29 H 1.08996 * 113.86584 * 337.34021 * 18 17 16 30 30 H 1.09002 * 113.86648 * 109.04691 * 18 17 16 31 31 H 1.09000 * 113.86784 * 221.76564 * 20 19 18 32 32 H 1.09002 * 113.98015 * 90.07686 * 20 19 18 33 33 H 1.07997 * 120.04034 * 180.02562 * 21 15 14 34 34 H 1.08006 * 119.96291 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 1.4644 -2.1294 0.0058 9 6 3.5114 -1.1942 0.0121 10 1 3.8711 -0.6783 0.9024 11 7 4.0062 -0.5047 -1.1869 12 6 4.0137 -2.6150 0.0182 13 6 4.0469 -3.3400 -1.1590 14 6 4.5118 -4.6403 -1.1583 15 6 4.9358 -5.2241 0.0295 16 16 5.5237 -6.8851 0.0366 17 6 5.3773 -7.3772 -1.7033 18 6 3.9893 -7.9292 -2.0789 19 8 4.7171 -8.9437 -2.8054 20 6 5.9001 -8.7965 -1.9944 21 6 4.8956 -4.4944 1.2116 22 6 4.4344 -3.1929 1.2023 23 1 -0.4849 0.8401 -0.0004 24 1 3.6862 -0.9642 -2.0262 25 1 3.7367 0.4677 -1.1820 26 1 3.7127 -2.8873 -2.0808 27 1 4.5417 -5.2043 -2.0788 28 1 5.7514 -6.6204 -2.3928 29 1 3.4236 -8.3146 -1.2307 30 1 3.4066 -7.2624 -2.7145 31 1 6.8298 -8.8160 -2.5629 32 1 5.9213 -9.4466 -1.1197 33 1 5.2247 -4.9447 2.1364 34 1 4.4032 -2.6251 2.1205 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260320047.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:27 Heat of formation + Delta-G solvation = 0.764356 kcal Electronic energy + Delta-G solvation = -17189.233285 eV Core-core repulsion = 14406.794005 eV Total energy + Delta-G solvation = -2782.439280 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.17524 -40.22691 -36.78302 -34.02829 -32.22776 -31.27965 -30.75118 -28.17111 -27.61736 -24.96127 -23.70701 -22.03722 -21.58252 -19.13842 -18.73240 -18.09519 -17.42381 -17.28672 -16.80685 -16.35730 -16.13899 -15.58711 -15.04174 -14.79876 -14.45642 -14.26082 -13.94431 -13.80791 -13.64982 -13.48358 -12.84664 -12.74617 -12.54860 -12.21100 -11.95245 -11.81091 -11.47817 -11.12608 -10.92988 -10.85410 -10.48542 -9.87020 -9.46333 -8.42314 -8.27222 -6.50293 0.33672 0.49288 0.49864 1.23284 1.31743 1.32141 1.41052 2.19923 2.54532 2.80468 2.92867 2.97437 3.77718 3.89278 3.94102 4.03858 4.04572 4.29440 4.30397 4.49675 4.54516 4.57091 4.73542 4.83113 4.88573 4.93214 4.97712 5.17432 5.30631 5.36066 5.43497 5.83909 5.98318 6.06467 6.36889 6.53991 6.67323 7.16651 8.74731 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.036663 B = 0.004311 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.525551 B = 6493.589466 C = 6747.381738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.019 3.981 3 Si 0.939 3.061 4 H -0.255 1.255 5 H -0.292 1.292 6 H -0.247 1.247 7 C -0.547 4.547 8 H 0.031 0.969 9 C 0.213 3.787 10 H 0.044 0.956 11 N -0.838 5.838 12 C -0.050 4.050 13 C -0.100 4.100 14 C -0.128 4.128 15 C -0.109 4.109 16 S -0.109 6.109 17 C -0.152 4.152 18 C 0.048 3.952 19 O -0.394 6.394 20 C 0.074 3.926 21 C -0.100 4.100 22 C -0.117 4.117 23 H 0.269 0.731 24 H 0.338 0.662 25 H 0.317 0.683 26 H 0.122 0.878 27 H 0.139 0.861 28 H 0.128 0.872 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.124 0.876 32 H 0.101 0.899 33 H 0.142 0.858 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.155 -13.451 -2.716 19.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.181 4.181 3 Si 0.764 3.236 4 H -0.180 1.180 5 H -0.219 1.219 6 H -0.171 1.171 7 C -0.587 4.587 8 H 0.050 0.950 9 C 0.103 3.897 10 H 0.062 0.938 11 N -0.371 5.371 12 C -0.052 4.052 13 C -0.120 4.120 14 C -0.151 4.151 15 C -0.221 4.221 16 S 0.134 5.866 17 C -0.281 4.281 18 C -0.031 4.031 19 O -0.313 6.313 20 C -0.004 4.004 21 C -0.123 4.123 22 C -0.137 4.137 23 H 0.078 0.922 24 H 0.151 0.849 25 H 0.132 0.868 26 H 0.140 0.860 27 H 0.156 0.844 28 H 0.146 0.854 29 H 0.117 0.883 30 H 0.121 0.879 31 H 0.142 0.858 32 H 0.119 0.881 33 H 0.160 0.840 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 14.116 -14.447 -1.778 20.277 hybrid contribution -1.889 2.219 -0.940 3.062 sum 12.227 -12.229 -2.718 17.505 Atomic orbital electron populations 1.70047 1.08179 1.28375 1.51047 1.25892 0.95546 1.02981 0.93664 0.85945 0.79188 0.78741 0.79767 1.17989 1.21938 1.17059 1.21816 0.91798 0.93233 1.51813 0.95028 1.18326 0.90889 0.89522 0.90990 0.93813 1.59686 1.66262 1.05479 1.05688 1.20023 0.95288 0.95960 0.93971 1.20904 0.99012 0.94059 0.98073 1.21227 1.01224 0.95516 0.97134 1.21675 1.05598 0.98217 0.96655 1.85169 1.81494 1.07704 1.12269 1.27063 1.01462 1.03033 0.96567 1.24501 0.93515 0.88557 0.96495 1.89767 1.28079 1.61637 1.51862 1.23964 0.91136 0.89934 0.95385 1.20840 1.00623 0.93584 0.97261 1.21102 0.99193 0.95516 0.97868 0.92188 0.84934 0.86766 0.86020 0.84362 0.85389 0.88310 0.87939 0.85767 0.88123 0.84040 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.70 13.96 21.45 0.30 -56.40 16 2 C 0.02 1.04 5.47 84.66 0.46 1.50 16 3 Si 0.94 41.98 24.61 68.60 1.69 43.67 16 4 H -0.25 -10.53 7.01 99.48 0.70 -9.83 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 6 H -0.25 -10.48 6.54 99.48 0.65 -9.82 16 7 C -0.55 -30.18 9.28 25.60 0.24 -29.94 16 8 H 0.03 1.97 7.98 -2.91 -0.02 1.95 16 9 C 0.21 9.74 2.47 43.42 0.11 9.85 16 10 H 0.04 2.06 7.06 -2.38 -0.02 2.04 16 11 N -0.84 -34.84 8.98 -174.96 -1.57 -36.42 16 12 C -0.05 -2.03 4.90 -19.83 -0.10 -2.13 16 13 C -0.10 -3.65 9.28 22.25 0.21 -3.44 16 14 C -0.13 -3.87 9.33 22.41 0.21 -3.66 16 15 C -0.11 -3.20 6.11 22.62 0.14 -3.06 16 16 S -0.11 -2.45 21.74 -56.49 -1.23 -3.68 16 17 C -0.15 -2.73 3.20 31.29 0.10 -2.63 16 18 C 0.05 0.90 8.68 72.29 0.63 1.53 16 19 O -0.39 -8.03 12.46 -148.98 -1.86 -9.88 16 20 C 0.07 1.07 8.82 72.29 0.64 1.71 16 21 C -0.10 -3.11 9.79 22.41 0.22 -2.89 16 22 C -0.12 -4.23 9.66 22.25 0.21 -4.02 16 23 H 0.27 15.20 8.31 -92.71 -0.77 14.42 16 24 H 0.34 13.30 7.34 -89.70 -0.66 12.64 16 25 H 0.32 13.18 4.30 -89.69 -0.39 12.80 16 26 H 0.12 4.30 6.67 -2.91 -0.02 4.28 16 27 H 0.14 3.38 5.64 -2.91 -0.02 3.36 16 28 H 0.13 2.21 6.97 -2.39 -0.02 2.19 16 29 H 0.10 1.81 8.10 -2.39 -0.02 1.79 16 30 H 0.10 1.83 8.14 -2.39 -0.02 1.82 16 31 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.10 1.26 8.10 -2.39 -0.02 1.24 16 33 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 34 H 0.13 4.38 8.03 -2.91 -0.02 4.35 16 Total: -1.00 -64.61 292.23 0.42 -64.19 By element: Atomic # 1 Polarization: 35.68 SS G_CDS: 0.02 Total: 35.70 kcal Atomic # 6 Polarization: -40.25 SS G_CDS: 3.06 Total: -37.19 kcal Atomic # 7 Polarization: -91.54 SS G_CDS: -1.27 Total: -92.81 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -1.86 Total: -9.88 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 1.69 Total: 43.67 kcal Atomic # 16 Polarization: -2.45 SS G_CDS: -1.23 Total: -3.68 kcal Total: -64.61 0.42 -64.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260320047.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.954 kcal (2) G-P(sol) polarization free energy of solvation -64.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds