Wall clock time and date at job start Mon Mar 30 2020 06:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 109.46866 * 305.00034 * 10 9 7 12 12 N 1.46899 * 109.47377 * 64.99374 * 10 9 7 13 13 C 1.50700 * 109.47144 * 185.00130 * 10 9 7 14 14 C 1.38967 * 119.58983 * 279.99699 * 13 10 9 15 15 C 1.36472 * 120.62266 * 179.97438 * 14 13 10 16 16 C 1.39915 * 119.63928 * 0.02562 * 15 14 13 17 17 C 1.46008 * 134.02781 * 179.97438 * 16 15 14 18 18 Cl 1.73605 * 126.11950 * 359.96530 * 17 16 15 19 19 N 1.30299 * 107.76101 * 180.02562 * 17 16 15 20 20 N 1.39869 * 110.08002 * 359.97438 * 19 17 16 21 21 H 0.96997 * 125.44653 * 179.97438 * 20 19 17 22 22 C 1.37035 * 109.09945 * 0.02562 * 20 19 17 23 23 C 1.36587 * 119.59481 * 99.72434 * 13 10 9 24 24 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.00898 * 111.00374 * 296.05134 * 12 10 9 28 28 H 1.00901 * 110.99243 * 60.00090 * 12 10 9 29 29 H 1.07996 * 119.68879 * 0.02562 * 14 13 10 30 30 H 1.08004 * 120.17465 * 180.02562 * 15 14 13 31 31 H 1.08002 * 120.07169 * 0.02562 * 23 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 1 3.5833 -3.1739 0.8519 12 7 3.6381 -3.2959 -1.2447 13 6 5.5229 -2.6381 0.1409 14 6 6.3091 -2.3969 -0.9793 15 6 7.6705 -2.3929 -0.8854 16 6 8.2795 -2.6345 0.3508 17 6 9.6662 -2.7035 0.8027 18 17 11.0766 -2.4799 -0.1845 19 7 9.6557 -2.9642 2.0793 20 7 8.3384 -3.0788 2.5353 21 1 8.0739 -3.2699 3.4487 22 6 7.4814 -2.8789 1.4848 23 6 6.0941 -2.8711 1.3595 24 1 -0.4849 0.8400 0.0004 25 1 3.8786 -0.6821 -0.8838 26 1 3.8711 -0.6785 0.8962 27 1 2.6347 -3.3652 -1.3250 28 1 4.0322 -2.8162 -2.0400 29 1 5.8381 -2.2101 -1.9331 30 1 8.2745 -2.2041 -1.7607 31 1 5.4716 -3.0532 2.2231 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260335910.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:33 Heat of formation + Delta-G solvation = 71.264747 kcal Electronic energy + Delta-G solvation = -17000.390758 eV Core-core repulsion = 14115.424555 eV Total energy + Delta-G solvation = -2884.966203 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.32777 -38.11571 -36.99102 -34.97568 -32.48741 -32.23965 -29.76885 -29.27820 -28.60723 -24.67983 -22.83625 -22.02829 -21.63454 -19.89676 -17.75857 -17.19046 -16.56270 -15.70480 -15.38161 -15.20116 -14.47245 -14.18384 -13.80541 -13.68406 -13.20004 -12.68320 -12.50080 -12.23842 -11.99634 -11.89787 -11.53423 -11.34918 -10.91843 -10.75575 -10.52023 -10.37537 -10.04524 -9.89292 -9.35380 -8.68687 -8.55803 -8.01394 -7.87666 -6.18439 -4.18819 0.90198 1.27102 1.55990 2.23421 2.84691 3.21288 3.30321 3.33904 3.85096 4.33204 4.40365 4.67679 4.98207 5.04959 5.15265 5.40338 5.48835 5.58867 5.70173 5.96007 6.05350 6.20606 6.37645 6.50093 6.76924 6.84111 6.97624 7.14758 7.15408 7.30904 7.60064 7.83492 8.12157 8.35013 8.83748 9.43465 10.94039 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.029814 B = 0.004512 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.941294 B = 6204.185557 C = 6327.634888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.037 4.037 10 C 0.132 3.868 11 H 0.086 0.914 12 N -0.838 5.838 13 C 0.007 3.993 14 C -0.133 4.133 15 C -0.042 4.042 16 C -0.178 4.178 17 C 0.143 3.857 18 Cl 0.014 6.986 19 N -0.242 5.242 20 N -0.497 5.497 21 H 0.445 0.555 22 C 0.142 3.858 23 C -0.145 4.145 24 H 0.265 0.735 25 H 0.015 0.985 26 H 0.021 0.979 27 H 0.354 0.646 28 H 0.330 0.670 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.384 -5.067 0.258 18.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.076 4.076 10 C 0.021 3.979 11 H 0.104 0.896 12 N -0.367 5.367 13 C 0.004 3.996 14 C -0.153 4.153 15 C -0.063 4.063 16 C -0.186 4.186 17 C -0.060 4.060 18 Cl 0.042 6.958 19 N -0.060 5.060 20 N -0.216 5.216 21 H 0.291 0.709 22 C 0.027 3.973 23 C -0.167 4.167 24 H 0.074 0.926 25 H 0.033 0.967 26 H 0.039 0.961 27 H 0.168 0.832 28 H 0.141 0.859 29 H 0.148 0.852 30 H 0.146 0.854 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 18.451 -5.772 1.494 19.390 hybrid contribution -0.557 2.004 -0.373 2.113 sum 17.894 -3.768 1.122 18.320 Atomic orbital electron populations 1.69900 1.06281 1.27106 1.50234 1.24988 0.94674 0.99146 0.94221 0.86820 0.80422 0.83698 0.78628 1.20221 1.21294 1.19011 1.21019 0.88899 0.94595 1.52007 0.90674 1.20307 0.97693 0.92471 0.97131 1.20408 0.87498 0.96021 0.93997 0.89639 1.59231 1.17768 1.56388 1.03351 1.19834 0.96899 0.91133 0.91776 1.20569 0.92617 1.02908 0.99202 1.20273 0.94557 0.96536 0.94891 1.19361 0.89436 1.14225 0.95619 1.23692 0.88234 1.03188 0.90850 1.98392 1.36691 1.95185 1.65516 1.76439 0.99726 1.19080 1.10785 1.45627 1.00443 1.65243 1.10245 0.70949 1.18691 0.92495 0.98695 0.87431 1.19670 0.89580 1.08434 0.99033 0.92557 0.96708 0.96093 0.83167 0.85851 0.85219 0.85390 0.85125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.37 13.96 55.43 0.77 -25.60 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 20.92 27.47 -169.99 -4.67 16.25 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 7 C -0.53 -13.76 9.10 -34.44 -0.31 -14.08 16 8 H 0.08 2.09 7.39 -52.49 -0.39 1.70 16 9 C -0.04 -0.81 3.67 -27.88 -0.10 -0.91 16 10 C 0.13 2.39 2.97 -68.87 -0.20 2.19 16 11 H 0.09 1.59 7.97 -51.92 -0.41 1.18 16 12 N -0.84 -14.16 9.02 -5.65 -0.05 -14.21 16 13 C 0.01 0.11 4.93 -104.95 -0.52 -0.41 16 14 C -0.13 -1.94 9.21 -39.95 -0.37 -2.31 16 15 C -0.04 -0.57 10.06 -39.59 -0.40 -0.97 16 16 C -0.18 -2.56 6.37 -105.19 -0.67 -3.23 16 17 C 0.14 1.95 8.09 -15.09 -0.12 1.83 16 18 Cl 0.01 0.16 29.33 -51.86 -1.52 -1.36 16 19 N -0.24 -3.35 12.55 34.13 0.43 -2.92 16 20 N -0.50 -6.25 7.37 32.36 0.24 -6.01 16 21 H 0.44 4.09 8.96 -182.78 -1.64 2.46 16 22 C 0.14 2.03 7.34 -84.18 -0.62 1.41 16 23 C -0.14 -2.14 9.62 -39.79 -0.38 -2.52 16 24 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.01 0.32 7.58 -51.93 -0.39 -0.07 16 26 H 0.02 0.47 7.19 -51.93 -0.37 0.10 16 27 H 0.35 6.38 7.90 -39.29 -0.31 6.07 16 28 H 0.33 5.14 7.30 -39.29 -0.29 4.85 16 29 H 0.13 1.72 6.62 -52.49 -0.35 1.38 16 30 H 0.13 1.39 8.06 -52.48 -0.42 0.96 16 31 H 0.13 1.72 8.01 -52.49 -0.42 1.30 16 LS Contribution 282.55 15.07 4.26 4.26 Total: -1.00 -29.64 282.55 -8.50 -38.14 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -4.16 Total: 8.56 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -3.79 Total: -17.11 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: 1.39 Total: -48.74 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Atomic # 17 Polarization: 0.16 SS G_CDS: -1.52 Total: -1.36 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.64 -8.50 -38.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260335910.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.403 kcal (2) G-P(sol) polarization free energy of solvation -29.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds