Wall clock time and date at job start Mon Mar 30 2020 06:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 109.46866 * 305.00034 * 10 9 7 12 12 N 1.46899 * 109.47377 * 64.99374 * 10 9 7 13 13 C 1.50700 * 109.47144 * 185.00130 * 10 9 7 14 14 C 1.38967 * 119.58983 * 279.99699 * 13 10 9 15 15 C 1.36472 * 120.62266 * 179.97438 * 14 13 10 16 16 C 1.39915 * 119.63928 * 0.02562 * 15 14 13 17 17 C 1.46008 * 134.02781 * 179.97438 * 16 15 14 18 18 Cl 1.73605 * 126.11950 * 359.96530 * 17 16 15 19 19 N 1.30299 * 107.76101 * 180.02562 * 17 16 15 20 20 N 1.39869 * 110.08002 * 359.97438 * 19 17 16 21 21 H 0.96997 * 125.44653 * 179.97438 * 20 19 17 22 22 C 1.37035 * 109.09945 * 0.02562 * 20 19 17 23 23 C 1.36587 * 119.59481 * 99.72434 * 13 10 9 24 24 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.00898 * 111.00374 * 296.05134 * 12 10 9 28 28 H 1.00901 * 110.99243 * 60.00090 * 12 10 9 29 29 H 1.07996 * 119.68879 * 0.02562 * 14 13 10 30 30 H 1.08004 * 120.17465 * 180.02562 * 15 14 13 31 31 H 1.08002 * 120.07169 * 0.02562 * 23 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 1 3.5833 -3.1739 0.8519 12 7 3.6381 -3.2959 -1.2447 13 6 5.5229 -2.6381 0.1409 14 6 6.3091 -2.3969 -0.9793 15 6 7.6705 -2.3929 -0.8854 16 6 8.2795 -2.6345 0.3508 17 6 9.6662 -2.7035 0.8027 18 17 11.0766 -2.4799 -0.1845 19 7 9.6557 -2.9642 2.0793 20 7 8.3384 -3.0788 2.5353 21 1 8.0739 -3.2699 3.4487 22 6 7.4814 -2.8789 1.4848 23 6 6.0941 -2.8711 1.3595 24 1 -0.4849 0.8400 0.0004 25 1 3.8786 -0.6821 -0.8838 26 1 3.8711 -0.6785 0.8962 27 1 2.6347 -3.3652 -1.3250 28 1 4.0322 -2.8162 -2.0400 29 1 5.8381 -2.2101 -1.9331 30 1 8.2745 -2.2041 -1.7607 31 1 5.4716 -3.0532 2.2231 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260335910.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:33 Heat of formation + Delta-G solvation = 51.125731 kcal Electronic energy + Delta-G solvation = -17001.264051 eV Core-core repulsion = 14115.424555 eV Total energy + Delta-G solvation = -2885.839496 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.38337 -39.33377 -37.92347 -36.40534 -34.41635 -33.32915 -30.90964 -30.56333 -30.20230 -26.22867 -23.96056 -23.49905 -22.70784 -21.29821 -19.14887 -18.78029 -17.68045 -17.12901 -16.40919 -16.38748 -16.18771 -15.46587 -15.14789 -14.92157 -14.77035 -14.15530 -14.08365 -13.53961 -13.22640 -13.03796 -12.89461 -12.63540 -12.40445 -12.15985 -11.94775 -11.80797 -11.71665 -11.27186 -11.06453 -10.77916 -9.75706 -9.31967 -9.03086 -8.29533 -6.33046 -0.18586 0.31422 0.46154 1.16964 1.33626 1.37268 1.46869 1.85632 2.34219 2.73116 3.06176 3.36681 3.57407 3.79913 4.01495 4.15961 4.31916 4.39860 4.47167 4.73336 4.79943 4.92419 5.09239 5.16575 5.29186 5.44316 5.61854 5.69773 5.80760 6.13706 6.23151 6.35200 6.40337 6.74374 6.75297 7.32248 8.86042 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.029814 B = 0.004512 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.941294 B = 6204.185557 C = 6327.634888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.013 3.987 3 Si 0.939 3.061 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.253 1.253 7 C -0.523 4.523 8 H 0.046 0.954 9 C -0.031 4.031 10 C 0.143 3.857 11 H 0.074 0.926 12 N -0.831 5.831 13 C -0.010 4.010 14 C -0.142 4.142 15 C -0.035 4.035 16 C -0.190 4.190 17 C 0.137 3.863 18 Cl 0.035 6.965 19 N -0.252 5.252 20 N -0.488 5.488 21 H 0.457 0.543 22 C 0.134 3.866 23 C -0.147 4.147 24 H 0.265 0.735 25 H 0.021 0.979 26 H 0.016 0.984 27 H 0.346 0.654 28 H 0.339 0.661 29 H 0.141 0.859 30 H 0.155 0.845 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.792 -4.658 -0.094 20.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.185 4.185 3 Si 0.764 3.236 4 H -0.192 1.192 5 H -0.215 1.215 6 H -0.177 1.177 7 C -0.561 4.561 8 H 0.064 0.936 9 C -0.071 4.071 10 C 0.031 3.969 11 H 0.092 0.908 12 N -0.360 5.360 13 C -0.013 4.013 14 C -0.162 4.162 15 C -0.055 4.055 16 C -0.198 4.198 17 C -0.065 4.065 18 Cl 0.063 6.937 19 N -0.071 5.071 20 N -0.208 5.208 21 H 0.306 0.694 22 C 0.018 3.982 23 C -0.169 4.169 24 H 0.074 0.926 25 H 0.040 0.960 26 H 0.034 0.966 27 H 0.159 0.841 28 H 0.152 0.848 29 H 0.158 0.842 30 H 0.173 0.827 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 20.889 -5.380 1.151 21.601 hybrid contribution -1.250 1.781 -0.252 2.190 sum 19.639 -3.599 0.899 19.986 Atomic orbital electron populations 1.70043 1.08070 1.27971 1.52502 1.25837 0.95365 1.02913 0.94347 0.85822 0.79391 0.79301 0.79095 1.19194 1.21483 1.17735 1.21338 0.91260 0.93325 1.50180 0.93590 1.20237 0.94652 0.95244 0.96926 1.20161 0.89234 0.93418 0.94094 0.90760 1.59214 1.17117 1.56182 1.03453 1.19651 0.95406 0.93261 0.92996 1.20700 0.93125 1.03174 0.99152 1.20523 0.94300 0.95162 0.95517 1.19651 0.89936 1.14134 0.96073 1.23866 0.88861 1.02871 0.90927 1.98400 1.35415 1.95015 1.64853 1.76420 1.00220 1.19295 1.11119 1.45678 0.99871 1.64588 1.10698 0.69430 1.18723 0.92417 0.98878 0.88141 1.19752 0.90087 1.08018 0.99045 0.92602 0.96049 0.96610 0.84099 0.84778 0.84161 0.82708 0.84193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.71 13.96 21.45 0.30 -56.41 16 2 C 0.01 0.72 5.47 84.66 0.46 1.18 16 3 Si 0.94 42.73 27.47 68.60 1.88 44.62 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 6 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16 7 C -0.52 -27.56 9.10 25.60 0.23 -27.32 16 8 H 0.05 2.63 7.39 -2.91 -0.02 2.61 16 9 C -0.03 -1.35 3.67 29.85 0.11 -1.24 16 10 C 0.14 5.07 2.97 44.17 0.13 5.20 16 11 H 0.07 2.77 7.97 -2.38 -0.02 2.75 16 12 N -0.83 -27.49 9.02 -171.80 -1.55 -29.04 16 13 C -0.01 -0.30 4.93 -20.08 -0.10 -0.40 16 14 C -0.14 -3.80 9.21 22.03 0.20 -3.59 16 15 C -0.03 -0.84 10.06 22.26 0.22 -0.62 16 16 C -0.19 -4.99 6.37 -20.23 -0.13 -5.11 16 17 C 0.14 3.41 8.09 86.94 0.70 4.12 16 18 Cl 0.04 0.70 29.33 -2.72 -0.08 0.62 16 19 N -0.25 -6.44 12.55 -45.94 -0.58 -7.02 16 20 N -0.49 -11.31 7.37 -51.54 -0.38 -11.69 16 21 H 0.46 7.58 8.96 -213.47 -1.91 5.67 16 22 C 0.13 3.57 7.34 39.21 0.29 3.85 16 23 C -0.15 -4.11 9.62 22.14 0.21 -3.89 16 24 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 25 H 0.02 0.89 7.58 -2.38 -0.02 0.87 16 26 H 0.02 0.69 7.19 -2.39 -0.02 0.67 16 27 H 0.35 12.53 7.90 -89.70 -0.71 11.83 16 28 H 0.34 10.10 7.30 -89.69 -0.66 9.44 16 29 H 0.14 3.36 6.62 -2.91 -0.02 3.35 16 30 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 31 H 0.14 3.52 8.01 -2.91 -0.02 3.50 16 Total: -1.00 -62.56 282.55 -0.19 -62.75 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: -2.13 Total: 24.00 kcal Atomic # 6 Polarization: -30.16 SS G_CDS: 2.34 Total: -27.82 kcal Atomic # 7 Polarization: -101.96 SS G_CDS: -2.21 Total: -104.16 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.88 Total: 44.62 kcal Atomic # 17 Polarization: 0.70 SS G_CDS: -0.08 Total: 0.62 kcal Total: -62.56 -0.19 -62.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260335910.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.876 kcal (2) G-P(sol) polarization free energy of solvation -62.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds