Wall clock time and date at job start Mon Mar 30 2020 06:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00111 * 2 1 4 4 H 1.48497 * 109.47507 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46928 * 299.99446 * 3 2 1 6 6 H 1.48497 * 109.47264 * 59.98956 * 3 2 1 7 7 C 1.37874 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99722 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00344 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47308 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47039 * 55.00161 * 10 9 7 12 12 N 1.46903 * 109.47102 * 294.99886 * 10 9 7 13 13 C 1.50699 * 109.47212 * 174.99755 * 10 9 7 14 14 C 1.38973 * 119.59260 * 80.01994 * 13 10 9 15 15 C 1.36467 * 120.62592 * 179.97438 * 14 13 10 16 16 C 1.39930 * 119.64019 * 0.04356 * 15 14 13 17 17 C 1.46006 * 134.03094 * 180.02562 * 16 15 14 18 18 Cl 1.73605 * 126.11979 * 359.94231 * 17 16 15 19 19 N 1.30305 * 107.76245 * 179.97438 * 17 16 15 20 20 N 1.39873 * 110.07401 * 359.78232 * 19 17 16 21 21 H 0.97004 * 125.44614 * 180.32064 * 20 19 17 22 22 C 1.37034 * 109.10211 * 0.36799 * 20 19 17 23 23 C 1.36589 * 119.59655 * 260.00065 * 13 10 9 24 24 H 0.96997 * 119.99991 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47260 * 59.99803 * 9 7 2 26 26 H 1.09010 * 109.46948 * 299.99768 * 9 7 2 27 27 H 1.00896 * 110.99810 * 176.05077 * 12 10 9 28 28 H 1.00902 * 110.99730 * 299.99699 * 12 10 9 29 29 H 1.07994 * 119.68479 * 0.02562 * 14 13 10 30 30 H 1.08002 * 120.17874 * 180.02562 * 15 14 13 31 31 H 1.08002 * 120.07840 * 0.02562 * 23 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3965 1.2123 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 1 2.9294 -3.5551 0.8424 12 7 3.0084 -3.6538 -1.2547 13 6 1.4960 -4.9636 0.1244 14 6 0.8947 -5.5189 -0.9987 15 6 0.2113 -6.6969 -0.9107 16 6 0.1151 -7.3506 0.3228 17 6 -0.5180 -8.5884 0.7687 18 17 -1.4166 -9.6934 -0.2239 19 7 -0.2885 -8.7149 2.0451 20 7 0.4725 -7.6353 2.5054 21 1 0.7734 -7.5079 3.4188 22 6 0.7242 -6.7860 1.4599 23 6 1.4165 -5.5833 1.3391 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8904 27 1 3.7160 -4.3731 -1.2524 28 1 2.3961 -3.7517 -2.0507 29 1 0.9696 -5.0138 -1.9503 30 1 -0.2528 -7.1222 -1.7882 31 1 1.8881 -5.1411 2.2042 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260335913.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:34 Heat of formation + Delta-G solvation = 51.494098 kcal Electronic energy + Delta-G solvation = -16930.395064 eV Core-core repulsion = 14044.571541 eV Total energy + Delta-G solvation = -2885.823523 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.42277 -39.36640 -37.95137 -36.21981 -34.39462 -33.35872 -30.87364 -30.34253 -30.05093 -26.22241 -24.01335 -23.72030 -22.74928 -21.31905 -18.87181 -18.47011 -17.78290 -16.92096 -16.47770 -16.40930 -16.25024 -15.81132 -15.42328 -14.86655 -14.41396 -14.26678 -13.53883 -13.37376 -13.08509 -12.98401 -12.87359 -12.71450 -12.43662 -12.32588 -11.97245 -11.77293 -11.44940 -11.15818 -11.08186 -10.48880 -9.70254 -9.34841 -9.08268 -8.09076 -6.14769 -0.22853 0.28293 0.39857 1.13199 1.44529 1.46234 1.58975 1.82438 2.49186 2.68054 3.25030 3.32684 3.58632 3.85436 3.95122 4.00613 4.29369 4.36928 4.51409 4.70172 4.90239 4.99561 5.05471 5.32145 5.52059 5.52927 5.70729 5.78213 5.91008 6.10292 6.31932 6.33395 6.55086 6.87887 7.00385 7.52157 9.02830 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.037520 B = 0.004008 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.096036 B = 6984.014380 C = 7060.069925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.005 4.005 3 Si 0.958 3.042 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.504 4.504 8 H 0.063 0.937 9 C 0.044 3.956 10 C 0.145 3.855 11 H 0.078 0.922 12 N -0.827 5.827 13 C -0.054 4.054 14 C -0.152 4.152 15 C -0.033 4.033 16 C -0.191 4.191 17 C 0.138 3.862 18 Cl 0.036 6.964 19 N -0.251 5.251 20 N -0.487 5.487 21 H 0.458 0.542 22 C 0.134 3.866 23 C -0.143 4.143 24 H 0.259 0.741 25 H -0.004 1.004 26 H -0.008 1.008 27 H 0.343 0.657 28 H 0.341 0.659 29 H 0.137 0.863 30 H 0.154 0.846 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.239 -17.857 0.115 17.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.201 4.201 3 Si 0.784 3.216 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.542 4.542 8 H 0.081 0.919 9 C 0.006 3.994 10 C 0.033 3.967 11 H 0.096 0.904 12 N -0.357 5.357 13 C -0.059 4.059 14 C -0.171 4.171 15 C -0.053 4.053 16 C -0.200 4.200 17 C -0.065 4.065 18 Cl 0.064 6.936 19 N -0.069 5.069 20 N -0.207 5.207 21 H 0.306 0.694 22 C 0.019 3.981 23 C -0.165 4.165 24 H 0.067 0.933 25 H 0.014 0.986 26 H 0.010 0.990 27 H 0.156 0.844 28 H 0.155 0.845 29 H 0.155 0.845 30 H 0.172 0.828 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.079 -17.829 1.270 17.906 hybrid contribution -0.231 0.493 -0.225 0.589 sum 0.848 -17.335 1.045 17.387 Atomic orbital electron populations 1.70106 1.07608 1.27160 1.53253 1.25863 0.95585 1.02900 0.95733 0.85497 0.79246 0.79585 0.77265 1.18734 1.20974 1.21004 1.21547 0.93564 0.91346 1.47737 0.91906 1.18954 0.93239 0.92215 0.94954 1.20429 0.93766 0.89088 0.93394 0.90377 1.58744 1.18217 1.55375 1.03328 1.20848 0.95605 0.96269 0.93159 1.20700 1.00613 0.96588 0.99245 1.20505 0.95692 0.93443 0.95634 1.19659 1.07708 0.96569 0.96025 1.23864 0.98951 0.92741 0.90922 1.98400 1.71186 1.59524 1.64475 1.76425 1.11322 1.08299 1.10895 1.45690 1.47592 1.16569 1.10897 0.69377 1.18807 0.97854 0.93306 0.88168 1.19834 1.04086 0.93554 0.99061 0.93269 0.98590 0.98966 0.84430 0.84480 0.84542 0.82830 0.84141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.59 13.29 21.45 0.28 -56.31 16 2 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 3 Si 0.96 44.39 29.54 68.60 2.03 46.42 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.50 -27.61 8.84 25.60 0.23 -27.38 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.04 2.17 4.60 29.85 0.14 2.31 16 10 C 0.15 5.38 2.91 44.17 0.13 5.51 16 11 H 0.08 2.91 7.96 -2.39 -0.02 2.89 16 12 N -0.83 -27.29 8.77 -171.80 -1.51 -28.80 16 13 C -0.05 -1.70 4.92 -20.07 -0.10 -1.80 16 14 C -0.15 -4.30 9.21 22.03 0.20 -4.09 16 15 C -0.03 -0.83 10.06 22.27 0.22 -0.61 16 16 C -0.19 -5.27 6.37 -20.23 -0.13 -5.39 16 17 C 0.14 3.56 8.09 86.93 0.70 4.27 16 18 Cl 0.04 0.75 29.33 -2.72 -0.08 0.67 16 19 N -0.25 -6.63 12.55 -45.94 -0.58 -7.20 16 20 N -0.49 -11.71 7.37 -51.54 -0.38 -12.08 16 21 H 0.46 7.92 8.96 -213.46 -1.91 6.01 16 22 C 0.13 3.72 7.34 39.21 0.29 4.01 16 23 C -0.14 -4.15 9.62 22.14 0.21 -3.93 16 24 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 25 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 26 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 27 H 0.34 9.13 9.06 -89.70 -0.81 8.31 16 28 H 0.34 10.65 7.30 -89.69 -0.65 10.00 16 29 H 0.14 3.57 6.61 -2.91 -0.02 3.55 16 30 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 31 H 0.14 3.66 8.00 -2.91 -0.02 3.63 16 Total: -1.00 -65.56 287.87 -0.05 -65.61 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -2.18 Total: 18.62 kcal Atomic # 6 Polarization: -29.28 SS G_CDS: 2.36 Total: -26.92 kcal Atomic # 7 Polarization: -102.22 SS G_CDS: -2.18 Total: -104.39 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 17 Polarization: 0.75 SS G_CDS: -0.08 Total: 0.67 kcal Total: -65.56 -0.05 -65.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260335913.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.101 kcal (2) G-P(sol) polarization free energy of solvation -65.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds