Wall clock time and date at job start Mon Mar 30 2020 06:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.39867 * 125.44555 * 2 1 4 4 C 1.30310 * 110.07604 * 179.97438 * 3 2 1 5 5 Cl 1.73602 * 126.11891 * 179.97438 * 4 3 2 6 6 C 1.46002 * 107.76353 * 0.02562 * 4 3 2 7 7 C 1.39916 * 134.03456 * 180.02562 * 6 4 3 8 8 C 1.36480 * 119.63891 * 179.23597 * 7 6 4 9 9 C 1.38965 * 120.62373 * 0.65978 * 8 7 6 10 10 C 1.36593 * 120.81492 * 359.58543 * 9 8 7 11 11 C 1.50703 * 120.07553 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.46655 * 220.02460 * 11 10 9 13 13 N 1.46892 * 109.47203 * 340.02105 * 11 10 9 14 14 C 1.50696 * 109.46908 * 100.02531 * 11 10 9 15 15 H 1.08001 * 120.00207 * 359.97438 * 14 11 10 16 16 C 1.37884 * 119.99810 * 180.02562 * 14 11 10 17 17 N 1.31515 * 119.99844 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 120.00050 * 179.97438 * 16 14 11 19 19 H 1.48509 * 109.46921 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.46956 * 119.99289 * 18 16 14 21 21 H 1.48491 * 109.46843 * 239.99642 * 18 16 14 22 22 C 1.37031 * 125.45341 * 179.69067 * 2 1 3 23 23 H 1.09001 * 109.47060 * 90.02906 * 1 2 3 24 24 H 1.09004 * 109.47073 * 210.02395 * 1 2 3 25 25 H 1.09000 * 109.47212 * 330.02478 * 1 2 3 26 26 H 1.07998 * 120.18315 * 359.97438 * 7 6 4 27 27 H 1.07996 * 119.68710 * 180.24499 * 8 7 6 28 28 H 1.08000 * 119.59322 * 179.60936 * 9 8 7 29 29 H 1.00899 * 110.99999 * 59.99662 * 13 11 10 30 30 H 1.00897 * 111.00190 * 183.95256 * 13 11 10 31 31 H 0.96995 * 120.00102 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2762 1.1394 0.0000 4 6 3.5327 0.7941 0.0005 5 17 4.8911 1.8750 0.0001 6 6 3.5937 -0.6647 0.0003 7 6 4.6393 -1.5944 0.0011 8 6 4.3556 -2.9292 0.0164 9 6 3.0387 -3.3731 0.0174 10 6 2.0010 -2.4849 0.0117 11 6 0.5792 -2.9846 0.0123 12 1 -0.0236 -2.3659 -0.6525 13 7 0.5494 -4.3772 -0.4540 14 6 0.0215 -2.9109 1.4103 15 1 0.6353 -2.5397 2.2177 16 6 -1.2721 -3.3182 1.6588 17 7 -2.0194 -3.7707 0.6757 18 14 -1.9633 -3.2275 3.3919 19 1 -0.9285 -2.6871 4.3098 20 1 -3.1512 -2.3365 3.4050 21 1 -2.3593 -4.5871 3.8386 22 6 2.2599 -1.1162 0.0060 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3634 0.8902 0.5134 26 1 5.6654 -1.2575 0.0017 27 1 5.1621 -3.6475 0.0211 28 1 2.8332 -4.4333 0.0232 29 1 1.1015 -4.9714 0.1462 30 1 -0.3988 -4.7149 -0.5241 31 1 -2.9295 -4.0569 0.8504 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260373277.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:45 Heat of formation + Delta-G solvation = 66.434107 kcal Electronic energy + Delta-G solvation = -17841.598268 eV Core-core repulsion = 14956.422592 eV Total energy + Delta-G solvation = -2885.175675 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.31799 -38.65993 -37.85513 -36.66921 -34.16465 -33.16356 -30.98943 -30.49714 -28.35371 -27.03017 -24.84946 -23.11916 -22.71060 -21.04939 -18.63700 -18.21369 -17.74518 -16.64111 -16.59020 -16.19775 -16.01800 -15.71830 -14.89863 -14.73758 -14.27018 -14.00502 -13.63557 -13.41126 -13.28883 -12.93848 -12.87772 -12.78353 -12.52954 -12.25366 -12.15308 -11.89273 -11.73276 -11.28483 -10.79004 -10.63805 -9.59327 -9.23902 -8.66544 -8.11441 -6.39549 0.00878 0.29653 0.63179 1.31739 1.33111 1.40245 1.48370 1.76073 2.33729 2.94999 3.01186 3.40008 3.79855 4.03544 4.21673 4.37199 4.39930 4.44528 4.58031 4.75950 4.86084 5.02724 5.07193 5.16152 5.47588 5.61115 5.67857 5.83627 5.92365 6.01401 6.14892 6.47988 6.61571 6.93305 7.12111 7.37002 8.78312 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.024232 B = 0.006688 C = 0.005873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.216266 B = 4185.486463 C = 4766.042446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.390 5.390 3 N -0.265 5.265 4 C 0.127 3.873 5 Cl 0.036 6.964 6 C -0.186 4.186 7 C -0.060 4.060 8 C -0.141 4.141 9 C -0.077 4.077 10 C -0.080 4.080 11 C 0.249 3.751 12 H 0.022 0.978 13 N -0.842 5.842 14 C -0.549 4.549 15 H 0.038 0.962 16 C 0.037 3.963 17 N -0.905 5.905 18 Si 0.945 3.055 19 H -0.280 1.280 20 H -0.278 1.278 21 H -0.278 1.278 22 C 0.119 3.881 23 H 0.069 0.931 24 H 0.111 0.889 25 H 0.092 0.908 26 H 0.156 0.844 27 H 0.162 0.838 28 H 0.139 0.861 29 H 0.321 0.679 30 H 0.347 0.653 31 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.616 4.072 -0.894 11.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.180 5.180 3 N -0.084 5.084 4 C -0.075 4.075 5 Cl 0.064 6.936 6 C -0.194 4.194 7 C -0.080 4.080 8 C -0.160 4.160 9 C -0.098 4.098 10 C -0.084 4.084 11 C 0.138 3.862 12 H 0.040 0.960 13 N -0.372 5.372 14 C -0.588 4.588 15 H 0.056 0.944 16 C -0.164 4.164 17 N -0.544 5.544 18 Si 0.771 3.229 19 H -0.205 1.205 20 H -0.204 1.204 21 H -0.203 1.203 22 C 0.004 3.996 23 H 0.088 0.912 24 H 0.129 0.871 25 H 0.111 0.889 26 H 0.173 0.827 27 H 0.179 0.821 28 H 0.156 0.844 29 H 0.132 0.868 30 H 0.162 0.838 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.869 5.375 -1.627 11.355 hybrid contribution -0.868 -0.494 1.806 2.064 sum 9.001 4.882 0.179 10.241 Atomic orbital electron populations 1.22382 0.72520 1.06408 1.03507 1.48048 1.06235 1.00111 1.63630 1.76326 1.01502 1.10437 1.20109 1.23813 0.89474 0.89575 1.04611 1.98360 1.36163 1.62275 1.96804 1.19705 0.93898 0.90950 1.14875 1.20524 0.97958 0.91714 0.97847 1.21030 0.96556 0.95704 1.02757 1.20857 0.91823 1.00058 0.97015 1.19281 0.98417 0.88728 1.02022 1.17784 0.87164 0.88565 0.92651 0.95981 1.59486 1.18793 1.03943 1.54978 1.21836 0.98063 1.43892 0.95039 0.94355 1.25525 0.96795 0.94245 0.99882 1.69810 1.09466 1.42832 1.32269 0.85711 0.78171 0.77952 0.81021 1.20461 1.20354 1.20345 1.18900 0.90148 0.89686 1.00878 0.91241 0.87083 0.88932 0.82670 0.82052 0.84372 0.86815 0.83782 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.55 10.26 127.77 1.31 4.86 16 2 N -0.39 -16.14 4.05 -361.02 -1.46 -17.60 16 3 N -0.27 -10.32 12.41 -45.94 -0.57 -10.89 16 4 C 0.13 4.42 8.09 86.93 0.70 5.12 16 5 Cl 0.04 0.95 29.33 -2.72 -0.08 0.87 16 6 C -0.19 -6.74 6.37 -20.23 -0.13 -6.87 16 7 C -0.06 -1.76 10.06 22.27 0.22 -1.54 16 8 C -0.14 -4.03 9.97 22.03 0.22 -3.81 16 9 C -0.08 -2.72 9.20 22.06 0.20 -2.52 16 10 C -0.08 -3.40 5.01 -19.99 -0.10 -3.50 16 11 C 0.25 11.64 2.24 43.42 0.10 11.74 16 12 H 0.02 1.15 6.41 -2.39 -0.02 1.14 16 13 N -0.84 -37.34 8.66 -174.97 -1.51 -38.85 16 14 C -0.55 -27.42 6.70 25.60 0.17 -27.25 16 15 H 0.04 2.03 7.74 -2.91 -0.02 2.01 16 16 C 0.04 1.85 5.38 84.66 0.46 2.31 16 17 N -0.90 -46.02 11.54 21.45 0.25 -45.77 16 18 Si 0.94 40.58 29.54 68.60 2.03 42.61 16 19 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 20 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 21 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 22 C 0.12 4.97 6.79 39.22 0.27 5.23 16 23 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 24 H 0.11 4.91 4.25 -2.38 -0.01 4.90 16 25 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 26 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 27 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 28 H 0.14 4.59 6.18 -2.91 -0.02 4.58 16 29 H 0.32 13.23 7.27 -89.69 -0.65 12.58 16 30 H 0.35 16.60 7.08 -89.70 -0.63 15.96 16 31 H 0.27 13.11 8.31 -92.71 -0.77 12.34 16 Total: -1.00 -55.82 276.55 1.98 -53.84 By element: Atomic # 1 Polarization: 32.12 SS G_CDS: -0.09 Total: 32.03 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: 3.42 Total: -16.23 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -3.30 Total: -113.11 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Atomic # 17 Polarization: 0.95 SS G_CDS: -0.08 Total: 0.87 kcal Total: -55.82 1.98 -53.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260373277.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.272 kcal (2) G-P(sol) polarization free energy of solvation -55.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds