Wall clock time and date at job start Mon Mar 30 2020 06:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 2 1 10 10 H 1.08995 * 110.83882 * 297.72513 * 9 7 2 11 11 C 1.54853 * 110.94196 * 173.95985 * 9 7 2 12 12 O 1.44268 * 101.19811 * 218.60963 * 11 9 7 13 13 C 1.34601 * 107.66976 * 24.63867 * 12 11 9 14 14 C 1.50694 * 122.94089 * 162.80868 * 13 12 11 15 15 C 1.50703 * 109.47142 * 179.97438 * 14 13 12 16 16 C 1.38239 * 119.98804 * 269.72672 * 15 14 13 17 17 C 1.38213 * 120.01198 * 179.72887 * 16 15 14 18 18 C 1.38350 * 119.98593 * 0.54199 * 17 16 15 19 19 Cl 1.73602 * 120.01281 * 179.74994 * 18 17 16 20 20 C 1.38352 * 119.97744 * 359.73024 * 18 17 16 21 21 C 1.38217 * 119.98233 * 359.97438 * 20 18 17 22 22 N 1.28637 * 114.11945 * 342.80942 * 13 12 11 23 23 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 24 24 H 1.09004 * 111.07800 * 336.58859 * 11 9 7 25 25 H 1.08996 * 111.07756 * 100.62624 * 11 9 7 26 26 H 1.08998 * 109.47074 * 299.99940 * 14 13 12 27 27 H 1.09000 * 109.47550 * 59.99485 * 14 13 12 28 28 H 1.07998 * 119.98918 * 359.97438 * 16 15 14 29 29 H 1.07994 * 120.00800 * 180.27283 * 17 16 15 30 30 H 1.07993 * 120.00967 * 179.97438 * 20 18 17 31 31 H 1.08006 * 119.99199 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8989 -0.7198 -0.9029 11 6 4.0653 -2.6321 0.1505 12 8 5.1985 -2.4064 1.0143 13 6 4.9644 -1.2774 1.7088 14 6 5.7196 -0.9145 2.9614 15 6 5.2159 0.4051 3.4870 16 6 5.8063 1.5845 3.0728 17 6 5.3412 2.7953 3.5502 18 6 4.2918 2.8262 4.4514 19 17 3.7113 4.3463 5.0564 20 6 3.7050 1.6452 4.8698 21 6 4.1671 0.4354 4.3870 22 7 4.0396 -0.5355 1.2098 23 1 -0.4849 0.8401 -0.0004 24 1 3.3339 -3.2856 0.6262 25 1 4.3802 -3.0344 -0.8123 26 1 5.5674 -1.6878 3.7143 27 1 6.7825 -0.8328 2.7341 28 1 6.6286 1.5599 2.3731 29 1 5.7996 3.7168 3.2233 30 1 2.8862 1.6687 5.5735 31 1 3.7088 -0.4866 4.7133 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260380630.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:07 Heat of formation + Delta-G solvation = 4.610939 kcal Electronic energy + Delta-G solvation = -17547.759376 eV Core-core repulsion = 14627.610096 eV Total energy + Delta-G solvation = -2920.149280 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.33151 -39.10416 -36.42298 -33.57706 -33.36806 -31.65558 -30.90820 -29.48053 -26.73342 -25.08109 -22.70971 -21.75143 -20.86089 -19.46237 -16.98975 -16.87943 -16.18806 -15.57881 -15.35018 -14.98787 -14.46179 -13.86146 -13.42739 -13.40829 -13.28191 -12.73138 -12.64219 -12.23241 -12.11959 -11.42097 -11.33072 -11.16183 -10.87598 -10.68493 -10.63989 -10.20660 -10.09249 -9.74142 -9.13792 -8.84600 -8.55824 -8.40284 -8.11281 -6.12602 -4.22132 1.28276 1.49039 2.24577 2.96535 3.46464 3.53633 3.62560 3.67456 4.14603 4.54156 4.71485 4.87423 5.02745 5.08023 5.33553 5.41100 5.45210 5.65791 5.71162 5.76825 5.86177 5.88309 6.09080 6.20359 6.34304 6.37661 6.45876 6.68320 6.86782 6.96455 7.20607 7.58652 8.33877 8.58907 8.84128 9.50128 10.97112 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.017412 B = 0.008114 C = 0.006157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.668650 B = 3449.970002 C = 4546.295370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.088 3.912 3 Si 0.913 3.087 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.307 1.307 7 C -0.518 4.518 8 H 0.078 0.922 9 C 0.120 3.880 10 H 0.059 0.941 11 C 0.035 3.965 12 O -0.365 6.365 13 C 0.250 3.750 14 C 0.000 4.000 15 C -0.054 4.054 16 C -0.091 4.091 17 C -0.113 4.113 18 C -0.035 4.035 19 Cl -0.083 7.083 20 C -0.108 4.108 21 C -0.084 4.084 22 N -0.499 5.499 23 H 0.266 0.734 24 H 0.077 0.923 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.375 2.600 9.327 15.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.117 4.117 3 Si 0.743 3.257 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.235 1.235 7 C -0.556 4.556 8 H 0.096 0.904 9 C 0.013 3.987 10 H 0.076 0.924 11 C -0.042 4.042 12 O -0.270 6.270 13 C 0.021 3.979 14 C -0.038 4.038 15 C -0.055 4.055 16 C -0.109 4.109 17 C -0.131 4.131 18 C -0.061 4.061 19 Cl -0.054 7.054 20 C -0.127 4.127 21 C -0.102 4.102 22 N -0.233 5.233 23 H 0.075 0.925 24 H 0.095 0.905 25 H 0.110 0.890 26 H 0.116 0.884 27 H 0.115 0.885 28 H 0.146 0.854 29 H 0.147 0.853 30 H 0.149 0.851 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.844 3.465 9.431 15.531 hybrid contribution 0.171 0.309 -0.469 0.587 sum 12.015 3.774 8.962 15.457 Atomic orbital electron populations 1.69922 1.06607 1.27513 1.48965 1.24938 0.94623 0.99809 0.92310 0.86217 0.78790 0.81601 0.79136 1.19263 1.19870 1.23526 1.20620 0.86372 0.94947 1.53627 0.90423 1.21714 0.98400 0.87862 0.90726 0.92395 1.24557 0.85742 1.00763 0.93119 1.86788 1.43418 1.43020 1.53823 1.24992 0.93937 0.85181 0.93766 1.19033 0.98771 0.94796 0.91227 1.19424 0.95988 0.94133 0.95930 1.20892 1.00216 0.91175 0.98656 1.20924 0.96384 0.98764 0.97073 1.20868 0.98439 0.86573 1.00228 1.98344 1.88452 1.31517 1.87083 1.20964 0.99915 0.90830 1.00956 1.20936 0.95158 0.97621 0.96459 1.74672 1.08732 1.29132 1.10786 0.92474 0.90475 0.89000 0.88355 0.88461 0.85354 0.85289 0.85131 0.85125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.68 13.96 55.43 0.77 -26.90 16 2 C 0.09 2.61 5.47 -17.82 -0.10 2.52 16 3 Si 0.91 24.23 26.22 -169.99 -4.46 19.78 16 4 H -0.27 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.27 -7.12 6.61 56.52 0.37 -6.75 16 6 H -0.31 -8.10 7.11 56.52 0.40 -7.70 16 7 C -0.52 -14.71 9.37 -34.44 -0.32 -15.04 16 8 H 0.08 2.33 7.91 -52.49 -0.41 1.92 16 9 C 0.12 2.91 2.96 -67.50 -0.20 2.71 16 10 H 0.06 1.44 7.41 -51.93 -0.38 1.06 16 11 C 0.03 0.70 7.72 38.13 0.29 0.99 16 12 O -0.36 -7.03 11.17 -15.58 -0.17 -7.21 16 13 C 0.25 4.77 7.68 -13.62 -0.10 4.67 16 14 C 0.00 0.00 5.97 -29.04 -0.17 -0.18 16 15 C -0.05 -0.82 4.44 -104.62 -0.46 -1.28 16 16 C -0.09 -1.32 9.70 -39.59 -0.38 -1.71 16 17 C -0.11 -1.64 9.83 -39.55 -0.39 -2.03 16 18 C -0.03 -0.53 6.32 -39.50 -0.25 -0.78 16 19 Cl -0.08 -1.15 28.96 -51.86 -1.50 -2.66 16 20 C -0.11 -1.63 9.83 -39.55 -0.39 -2.02 16 21 C -0.08 -1.27 9.70 -39.59 -0.38 -1.65 16 22 N -0.50 -11.52 8.23 -51.72 -0.43 -11.94 16 23 H 0.27 7.77 8.31 -40.82 -0.34 7.43 16 24 H 0.08 1.57 7.81 -51.93 -0.41 1.16 16 25 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 26 H 0.10 1.13 8.09 -51.93 -0.42 0.71 16 27 H 0.10 1.08 8.08 -51.93 -0.42 0.66 16 28 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 29 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.13 1.79 8.06 -52.48 -0.42 1.36 16 LS Contribution 286.33 15.07 4.31 4.31 Total: -1.00 -32.87 286.33 -7.65 -40.53 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: -3.32 Total: -2.10 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -2.86 Total: -13.81 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.35 Total: -38.85 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.17 Total: -7.21 kcal Atomic # 14 Polarization: 24.23 SS G_CDS: -4.46 Total: 19.78 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -1.50 Total: -2.66 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.87 -7.65 -40.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260380630.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.139 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds