Wall clock time and date at job start Mon Mar 30 2020 06:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 2 1 10 10 H 1.08995 * 110.83882 * 297.72513 * 9 7 2 11 11 C 1.54853 * 110.94196 * 173.95985 * 9 7 2 12 12 O 1.44268 * 101.19811 * 218.60963 * 11 9 7 13 13 C 1.34601 * 107.66976 * 24.63867 * 12 11 9 14 14 C 1.50694 * 122.94089 * 162.80868 * 13 12 11 15 15 C 1.50703 * 109.47142 * 179.97438 * 14 13 12 16 16 C 1.38239 * 119.98804 * 269.72672 * 15 14 13 17 17 C 1.38213 * 120.01198 * 179.72887 * 16 15 14 18 18 C 1.38350 * 119.98593 * 0.54199 * 17 16 15 19 19 Cl 1.73602 * 120.01281 * 179.74994 * 18 17 16 20 20 C 1.38352 * 119.97744 * 359.73024 * 18 17 16 21 21 C 1.38217 * 119.98233 * 359.97438 * 20 18 17 22 22 N 1.28637 * 114.11945 * 342.80942 * 13 12 11 23 23 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 24 24 H 1.09004 * 111.07800 * 336.58859 * 11 9 7 25 25 H 1.08996 * 111.07756 * 100.62624 * 11 9 7 26 26 H 1.08998 * 109.47074 * 299.99940 * 14 13 12 27 27 H 1.09000 * 109.47550 * 59.99485 * 14 13 12 28 28 H 1.07998 * 119.98918 * 359.97438 * 16 15 14 29 29 H 1.07994 * 120.00800 * 180.27283 * 17 16 15 30 30 H 1.07993 * 120.00967 * 179.97438 * 20 18 17 31 31 H 1.08006 * 119.99199 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8989 -0.7198 -0.9029 11 6 4.0653 -2.6321 0.1505 12 8 5.1985 -2.4064 1.0143 13 6 4.9644 -1.2774 1.7088 14 6 5.7196 -0.9145 2.9614 15 6 5.2159 0.4051 3.4870 16 6 5.8063 1.5845 3.0728 17 6 5.3412 2.7953 3.5502 18 6 4.2918 2.8262 4.4514 19 17 3.7113 4.3463 5.0564 20 6 3.7050 1.6452 4.8698 21 6 4.1671 0.4354 4.3870 22 7 4.0396 -0.5355 1.2098 23 1 -0.4849 0.8401 -0.0004 24 1 3.3339 -3.2856 0.6262 25 1 4.3802 -3.0344 -0.8123 26 1 5.5674 -1.6878 3.7143 27 1 6.7825 -0.8328 2.7341 28 1 6.6286 1.5599 2.3731 29 1 5.7996 3.7168 3.2233 30 1 2.8862 1.6687 5.5735 31 1 3.7088 -0.4866 4.7133 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260380630.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:06 Heat of formation + Delta-G solvation = -17.800062 kcal Electronic energy + Delta-G solvation = -17548.731190 eV Core-core repulsion = 14627.610096 eV Total energy + Delta-G solvation = -2921.121094 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.90604 -40.22813 -37.52501 -35.45445 -34.75465 -33.52191 -31.99192 -31.02771 -28.14105 -26.92733 -23.80149 -22.96098 -22.73957 -20.90161 -19.03712 -18.07076 -17.72758 -17.14211 -16.56530 -16.36332 -15.98801 -15.66455 -14.83312 -14.55440 -14.48905 -14.43939 -14.10148 -13.88291 -13.67505 -12.74165 -12.62458 -12.45229 -12.30316 -12.24848 -12.16163 -12.02951 -11.80756 -11.75994 -11.02742 -10.64895 -9.95722 -9.82029 -9.52690 -8.39158 -6.49551 0.15288 0.39033 1.13723 1.32884 1.40316 1.43516 1.56767 2.34465 2.37722 2.84714 2.95759 3.49904 3.82193 3.88669 3.98177 4.05368 4.23073 4.34251 4.39904 4.60175 4.63627 4.68496 4.73920 4.85799 5.03015 5.07199 5.24799 5.27518 5.43807 5.58234 5.70293 5.89898 6.09916 6.53410 7.04746 7.26466 8.74272 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.017412 B = 0.008114 C = 0.006157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.668650 B = 3449.970002 C = 4546.295370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.038 3.962 3 Si 0.974 3.026 4 H -0.275 1.275 5 H -0.265 1.265 6 H -0.309 1.309 7 C -0.515 4.515 8 H 0.047 0.953 9 C 0.113 3.887 10 H 0.051 0.949 11 C 0.042 3.958 12 O -0.356 6.356 13 C 0.271 3.729 14 C 0.002 3.998 15 C -0.066 4.066 16 C -0.096 4.096 17 C -0.123 4.123 18 C -0.050 4.050 19 Cl -0.078 7.078 20 C -0.124 4.124 21 C -0.097 4.097 22 N -0.546 5.546 23 H 0.267 0.733 24 H 0.072 0.928 25 H 0.122 0.878 26 H 0.128 0.872 27 H 0.135 0.865 28 H 0.151 0.849 29 H 0.147 0.853 30 H 0.139 0.861 31 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.917 2.486 9.785 18.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.162 4.162 3 Si 0.802 3.198 4 H -0.200 1.200 5 H -0.189 1.189 6 H -0.237 1.237 7 C -0.553 4.553 8 H 0.065 0.935 9 C 0.005 3.995 10 H 0.068 0.932 11 C -0.035 4.035 12 O -0.261 6.261 13 C 0.044 3.956 14 C -0.035 4.035 15 C -0.067 4.067 16 C -0.115 4.115 17 C -0.141 4.141 18 C -0.077 4.077 19 Cl -0.049 7.049 20 C -0.143 4.143 21 C -0.115 4.115 22 N -0.281 5.281 23 H 0.076 0.924 24 H 0.090 0.910 25 H 0.140 0.860 26 H 0.146 0.854 27 H 0.153 0.847 28 H 0.168 0.832 29 H 0.164 0.836 30 H 0.157 0.843 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 14.410 3.334 9.891 17.793 hybrid contribution -0.570 0.254 -0.559 0.838 sum 13.840 3.588 9.333 17.074 Atomic orbital electron populations 1.70028 1.08030 1.28188 1.51477 1.25646 0.95131 1.02817 0.92595 0.85256 0.77859 0.78160 0.78486 1.20033 1.18940 1.23721 1.20883 0.89100 0.93478 1.51877 0.93457 1.21530 0.95715 0.90707 0.91507 0.93183 1.24486 0.85918 0.98334 0.94720 1.86815 1.42705 1.42998 1.53535 1.25921 0.92259 0.83603 0.93827 1.19348 0.99964 0.94950 0.89256 1.19630 0.96085 0.94957 0.95999 1.21233 1.00665 0.90917 0.98636 1.21238 0.96237 0.99828 0.96812 1.21098 0.98948 0.86912 1.00721 1.98340 1.88442 1.31099 1.87047 1.21193 1.00455 0.91128 1.01495 1.21186 0.95505 0.98001 0.96840 1.74562 1.11792 1.30637 1.11127 0.92445 0.90964 0.86011 0.85404 0.84664 0.83155 0.83556 0.84320 0.84272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.46 13.96 21.45 0.30 -59.16 16 2 C 0.04 2.30 5.47 84.65 0.46 2.76 16 3 Si 0.97 50.60 26.22 68.60 1.80 52.39 16 4 H -0.27 -14.46 7.11 99.48 0.71 -13.75 16 5 H -0.26 -13.20 6.61 99.48 0.66 -12.54 16 6 H -0.31 -15.86 7.11 99.48 0.71 -15.15 16 7 C -0.52 -29.58 9.37 25.60 0.24 -29.35 16 8 H 0.05 2.92 7.91 -2.91 -0.02 2.90 16 9 C 0.11 5.36 2.96 44.67 0.13 5.49 16 10 H 0.05 2.43 7.41 -2.39 -0.02 2.41 16 11 C 0.04 1.59 7.72 72.62 0.56 2.16 16 12 O -0.36 -12.40 11.17 -78.66 -0.88 -13.28 16 13 C 0.27 9.44 7.68 88.57 0.68 10.12 16 14 C 0.00 0.05 5.97 29.10 0.17 0.22 16 15 C -0.07 -1.80 4.44 -19.86 -0.09 -1.89 16 16 C -0.10 -2.51 9.70 22.26 0.22 -2.30 16 17 C -0.12 -3.32 9.83 22.29 0.22 -3.10 16 18 C -0.05 -1.47 6.32 22.32 0.14 -1.33 16 19 Cl -0.08 -2.09 28.96 -2.72 -0.08 -2.17 16 20 C -0.12 -3.63 9.83 22.29 0.22 -3.41 16 21 C -0.10 -2.78 9.70 22.27 0.22 -2.56 16 22 N -0.55 -24.07 8.23 -432.78 -3.56 -27.63 16 23 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 24 H 0.07 2.83 7.81 -2.39 -0.02 2.81 16 25 H 0.12 3.89 8.14 -2.39 -0.02 3.87 16 26 H 0.13 2.32 8.09 -2.39 -0.02 2.30 16 27 H 0.14 2.22 8.08 -2.39 -0.02 2.20 16 28 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 29 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 30 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 31 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -71.06 286.33 1.84 -69.21 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: 1.09 Total: 3.80 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: 3.17 Total: -23.17 kcal Atomic # 7 Polarization: -83.52 SS G_CDS: -3.26 Total: -86.78 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -0.88 Total: -13.28 kcal Atomic # 14 Polarization: 50.60 SS G_CDS: 1.80 Total: 52.39 kcal Atomic # 17 Polarization: -2.09 SS G_CDS: -0.08 Total: -2.17 kcal Total: -71.06 1.84 -69.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260380630.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.413 kcal (2) G-P(sol) polarization free energy of solvation -71.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds