Wall clock time and date at job start Mon Mar 30 2020 06:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99870 * 2 1 4 4 H 1.48500 * 109.47423 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47335 * 300.00454 * 3 2 1 6 6 H 1.48502 * 109.47010 * 60.00470 * 3 2 1 7 7 C 1.37881 * 120.00344 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00083 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99756 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.86042 * 56.25658 * 9 7 2 11 11 C 1.54844 * 110.94430 * 180.02562 * 9 7 2 12 12 O 1.44279 * 101.19715 * 141.39820 * 11 9 7 13 13 C 1.34600 * 107.66117 * 335.35916 * 12 11 9 14 14 C 1.50706 * 122.93256 * 197.19630 * 13 12 11 15 15 C 1.50698 * 109.46836 * 180.02562 * 14 13 12 16 16 C 1.38243 * 119.98552 * 269.72899 * 15 14 13 17 17 C 1.38222 * 120.00858 * 179.72857 * 16 15 14 18 18 C 1.38353 * 119.98932 * 0.54296 * 17 16 15 19 19 Cl 1.73594 * 120.01502 * 179.70634 * 18 17 16 20 20 C 1.38359 * 119.96986 * 359.72870 * 18 17 16 21 21 C 1.38207 * 119.98863 * 359.97438 * 20 18 17 22 22 N 1.28631 * 114.12467 * 17.46501 * 13 12 11 23 23 H 0.97001 * 119.99882 * 359.97438 * 1 2 3 24 24 H 1.08998 * 111.07807 * 23.41645 * 11 9 7 25 25 H 1.09003 * 111.07592 * 259.37415 * 11 9 7 26 26 H 1.09003 * 109.47142 * 300.02597 * 14 13 12 27 27 H 1.09001 * 109.47258 * 60.02744 * 14 13 12 28 28 H 1.07996 * 119.99867 * 359.97438 * 16 15 14 29 29 H 1.08005 * 120.00431 * 180.27358 * 17 16 15 30 30 H 1.07997 * 120.00385 * 179.97438 * 20 18 17 31 31 H 1.08005 * 119.99625 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 1 0.5668 -2.5522 -0.8473 11 6 2.2268 -3.7015 -0.0005 12 8 1.5445 -4.6160 0.8825 13 6 0.7525 -3.8881 1.6916 14 6 0.1764 -4.4271 2.9756 15 6 -0.6604 -3.3623 3.6367 16 6 -0.0814 -2.4897 4.5392 17 6 -0.8473 -1.5093 5.1415 18 6 -2.1959 -1.4085 4.8496 19 17 -3.1600 -0.1823 5.6114 20 6 -2.7759 -2.2857 3.9505 21 6 -2.0078 -3.2617 3.3442 22 7 0.5259 -2.6941 1.2701 23 1 -0.4850 0.8401 0.0004 24 1 3.1985 -3.4179 0.4037 25 1 2.3282 -4.1241 -1.0002 26 1 -0.4457 -5.2955 2.7585 27 1 0.9871 -4.7187 3.6434 28 1 0.9703 -2.5715 4.7707 29 1 -0.3939 -0.8248 5.8433 30 1 -3.8286 -2.2077 3.7225 31 1 -2.4605 -3.9468 2.6426 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260380635.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:08 Heat of formation + Delta-G solvation = 3.029480 kcal Electronic energy + Delta-G solvation = -17362.288757 eV Core-core repulsion = 14442.070899 eV Total energy + Delta-G solvation = -2920.217857 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.01261 -38.91450 -36.28440 -33.38041 -33.23658 -31.29856 -30.74137 -29.16601 -26.51372 -24.85148 -22.54222 -21.54458 -21.05173 -19.11161 -16.78205 -16.69449 -15.91208 -15.31036 -15.10853 -14.73815 -14.42530 -14.04789 -13.26080 -13.24589 -13.10253 -12.57432 -12.29249 -11.89992 -11.84853 -11.25527 -11.15779 -11.03928 -10.88810 -10.67134 -10.58759 -10.51677 -9.97370 -9.52788 -8.83486 -8.67175 -8.52253 -8.21600 -7.79993 -6.03794 -4.16498 1.46429 1.66468 2.38610 3.26345 3.32801 3.35839 3.39123 3.83989 4.35062 4.42814 4.94396 5.03781 5.18207 5.23334 5.51753 5.58844 5.61930 5.83678 5.87671 6.01575 6.06240 6.07354 6.25440 6.35914 6.52655 6.53030 6.85598 6.86950 7.11233 7.25698 7.56067 7.81605 8.16592 8.74909 9.11218 9.51918 11.03509 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.015033 B = 0.007447 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.093400 B = 3758.752315 C = 5166.343738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.082 3.918 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.061 0.939 9 C 0.157 3.843 10 H 0.060 0.940 11 C 0.023 3.977 12 O -0.372 6.372 13 C 0.211 3.789 14 C 0.004 3.996 15 C -0.047 4.047 16 C -0.086 4.086 17 C -0.109 4.109 18 C -0.034 4.034 19 Cl -0.087 7.087 20 C -0.108 4.108 21 C -0.085 4.085 22 N -0.447 5.447 23 H 0.260 0.740 24 H 0.068 0.932 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.347 -6.563 9.267 11.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.125 4.125 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.567 4.567 8 H 0.079 0.921 9 C 0.051 3.949 10 H 0.077 0.923 11 C -0.054 4.054 12 O -0.278 6.278 13 C -0.018 4.018 14 C -0.034 4.034 15 C -0.047 4.047 16 C -0.104 4.104 17 C -0.128 4.128 18 C -0.061 4.061 19 Cl -0.058 7.058 20 C -0.127 4.127 21 C -0.103 4.103 22 N -0.178 5.178 23 H 0.070 0.930 24 H 0.086 0.914 25 H 0.104 0.896 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.145 0.855 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.005 -5.746 9.439 11.754 hybrid contribution 0.922 0.815 -0.543 1.345 sum -3.083 -4.931 8.897 10.629 Atomic orbital electron populations 1.70038 1.05883 1.26399 1.46458 1.24969 0.94747 0.99021 0.93748 0.86580 0.80131 0.83804 0.77726 1.19720 1.20864 1.20793 1.20740 0.92189 0.89112 1.54629 0.92086 1.21223 0.90528 0.93207 0.89979 0.92291 1.24674 0.97269 0.90829 0.92585 1.86757 1.57045 1.36449 1.47582 1.25124 0.94128 0.89174 0.93376 1.18937 0.98338 0.96077 0.90056 1.19395 0.93583 0.96458 0.95312 1.20863 0.99348 0.94033 0.96139 1.20891 0.91806 0.98975 1.01108 1.20810 0.92279 0.93495 0.99485 1.98335 1.71818 1.54748 1.80908 1.20880 1.00365 0.95032 0.96425 1.20846 0.93340 0.98052 0.98066 1.75117 1.19255 1.11774 1.11703 0.93001 0.91414 0.89584 0.89014 0.89053 0.85533 0.85497 0.85468 0.85529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.18 13.15 55.43 0.73 -24.45 16 2 C 0.08 2.32 5.45 -17.82 -0.10 2.22 16 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.53 -14.65 8.79 -34.44 -0.30 -14.95 16 8 H 0.06 1.65 7.61 -52.49 -0.40 1.25 16 9 C 0.16 4.07 3.50 -67.51 -0.24 3.83 16 10 H 0.06 1.65 8.14 -51.93 -0.42 1.23 16 11 C 0.02 0.50 7.73 38.13 0.29 0.79 16 12 O -0.37 -7.80 11.18 -15.58 -0.17 -7.97 16 13 C 0.21 4.40 7.68 -13.62 -0.10 4.29 16 14 C 0.00 0.06 5.97 -29.03 -0.17 -0.11 16 15 C -0.05 -0.76 4.44 -104.62 -0.46 -1.23 16 16 C -0.09 -1.37 9.70 -39.59 -0.38 -1.75 16 17 C -0.11 -1.71 9.83 -39.54 -0.39 -2.10 16 18 C -0.03 -0.54 6.32 -39.49 -0.25 -0.79 16 19 Cl -0.09 -1.25 28.96 -51.86 -1.50 -2.75 16 20 C -0.11 -1.67 9.83 -39.55 -0.39 -2.06 16 21 C -0.08 -1.33 9.70 -39.59 -0.38 -1.72 16 22 N -0.45 -11.12 10.28 -51.72 -0.53 -11.65 16 23 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.07 1.42 7.78 -51.93 -0.40 1.02 16 25 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 26 H 0.09 1.17 8.09 -51.93 -0.42 0.75 16 27 H 0.09 1.18 8.08 -51.93 -0.42 0.76 16 28 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 29 H 0.13 1.75 8.06 -52.48 -0.42 1.33 16 30 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 31 H 0.13 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 291.74 15.07 4.40 4.40 Total: -1.00 -31.46 291.74 -8.30 -39.76 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -3.31 Total: -0.19 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -2.88 Total: -13.57 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.20 Total: -36.11 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: -0.17 Total: -7.97 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -1.50 Total: -2.75 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.46 -8.30 -39.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260380635.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.788 kcal (2) G-P(sol) polarization free energy of solvation -31.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds