Wall clock time and date at job start Mon Mar 30 2020 06:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99870 * 2 1 4 4 H 1.48500 * 109.47423 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47335 * 300.00454 * 3 2 1 6 6 H 1.48502 * 109.47010 * 60.00470 * 3 2 1 7 7 C 1.37881 * 120.00344 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00083 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99756 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.86042 * 56.25658 * 9 7 2 11 11 C 1.54844 * 110.94430 * 180.02562 * 9 7 2 12 12 O 1.44279 * 101.19715 * 141.39820 * 11 9 7 13 13 C 1.34600 * 107.66117 * 335.35916 * 12 11 9 14 14 C 1.50706 * 122.93256 * 197.19630 * 13 12 11 15 15 C 1.50698 * 109.46836 * 180.02562 * 14 13 12 16 16 C 1.38243 * 119.98552 * 269.72899 * 15 14 13 17 17 C 1.38222 * 120.00858 * 179.72857 * 16 15 14 18 18 C 1.38353 * 119.98932 * 0.54296 * 17 16 15 19 19 Cl 1.73594 * 120.01502 * 179.70634 * 18 17 16 20 20 C 1.38359 * 119.96986 * 359.72870 * 18 17 16 21 21 C 1.38207 * 119.98863 * 359.97438 * 20 18 17 22 22 N 1.28631 * 114.12467 * 17.46501 * 13 12 11 23 23 H 0.97001 * 119.99882 * 359.97438 * 1 2 3 24 24 H 1.08998 * 111.07807 * 23.41645 * 11 9 7 25 25 H 1.09003 * 111.07592 * 259.37415 * 11 9 7 26 26 H 1.09003 * 109.47142 * 300.02597 * 14 13 12 27 27 H 1.09001 * 109.47258 * 60.02744 * 14 13 12 28 28 H 1.07996 * 119.99867 * 359.97438 * 16 15 14 29 29 H 1.08005 * 120.00431 * 180.27358 * 17 16 15 30 30 H 1.07997 * 120.00385 * 179.97438 * 20 18 17 31 31 H 1.08005 * 119.99625 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 1 0.5668 -2.5522 -0.8473 11 6 2.2268 -3.7015 -0.0005 12 8 1.5445 -4.6160 0.8825 13 6 0.7525 -3.8881 1.6916 14 6 0.1764 -4.4271 2.9756 15 6 -0.6604 -3.3623 3.6367 16 6 -0.0814 -2.4897 4.5392 17 6 -0.8473 -1.5093 5.1415 18 6 -2.1959 -1.4085 4.8496 19 17 -3.1600 -0.1823 5.6114 20 6 -2.7759 -2.2857 3.9505 21 6 -2.0078 -3.2617 3.3442 22 7 0.5259 -2.6941 1.2701 23 1 -0.4850 0.8401 0.0004 24 1 3.1985 -3.4179 0.4037 25 1 2.3282 -4.1241 -1.0002 26 1 -0.4457 -5.2955 2.7585 27 1 0.9871 -4.7187 3.6434 28 1 0.9703 -2.5715 4.7707 29 1 -0.3939 -0.8248 5.8433 30 1 -3.8286 -2.2077 3.7225 31 1 -2.4605 -3.9468 2.6426 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260380635.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:08 Heat of formation + Delta-G solvation = -17.921284 kcal Electronic energy + Delta-G solvation = -17363.197250 eV Core-core repulsion = 14442.070899 eV Total energy + Delta-G solvation = -2921.126351 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.69265 -40.14128 -37.45809 -35.35069 -34.63108 -33.12879 -31.92042 -30.79470 -28.00902 -26.74498 -23.72978 -22.96330 -22.83433 -20.65816 -18.72816 -17.98801 -17.56092 -16.87662 -16.45925 -16.38391 -16.02088 -15.68195 -14.54296 -14.41334 -14.37042 -14.23212 -13.81046 -13.77839 -13.51927 -12.82565 -12.56016 -12.46841 -12.36483 -12.23158 -12.09843 -11.96880 -11.70208 -11.46442 -10.73454 -10.48788 -9.86946 -9.62313 -9.43547 -8.14643 -6.33320 0.24292 0.47013 1.20053 1.36749 1.38881 1.49554 1.68969 2.37538 2.48726 2.96069 3.12545 3.67070 3.88209 4.01572 4.05507 4.23604 4.31603 4.41094 4.46038 4.64297 4.72966 4.74351 4.84550 5.06033 5.09100 5.29270 5.33886 5.35235 5.65643 5.67069 5.79439 5.97033 6.15932 6.67875 7.33500 7.41292 8.92729 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.015033 B = 0.007447 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.093400 B = 3758.752315 C = 5166.343738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.032 3.968 3 Si 0.955 3.045 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.284 1.284 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.147 3.853 10 H 0.021 0.979 11 C 0.032 3.968 12 O -0.367 6.367 13 C 0.230 3.770 14 C 0.006 3.994 15 C -0.060 4.060 16 C -0.097 4.097 17 C -0.121 4.121 18 C -0.047 4.047 19 Cl -0.078 7.078 20 C -0.118 4.118 21 C -0.095 4.095 22 N -0.499 5.499 23 H 0.258 0.742 24 H 0.074 0.926 25 H 0.110 0.890 26 H 0.124 0.876 27 H 0.123 0.877 28 H 0.139 0.861 29 H 0.140 0.860 30 H 0.142 0.858 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.567 -7.266 10.044 12.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.172 4.172 3 Si 0.780 3.220 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.210 1.210 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.040 3.960 10 H 0.039 0.961 11 C -0.045 4.045 12 O -0.273 6.273 13 C 0.002 3.998 14 C -0.031 4.031 15 C -0.061 4.061 16 C -0.115 4.115 17 C -0.139 4.139 18 C -0.074 4.074 19 Cl -0.050 7.050 20 C -0.137 4.137 21 C -0.113 4.113 22 N -0.231 5.231 23 H 0.067 0.933 24 H 0.092 0.908 25 H 0.128 0.872 26 H 0.142 0.858 27 H 0.141 0.859 28 H 0.157 0.843 29 H 0.158 0.842 30 H 0.160 0.840 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.210 -6.465 10.217 12.509 hybrid contribution 0.654 0.949 -0.763 1.382 sum -2.556 -5.516 9.453 11.239 Atomic orbital electron populations 1.70181 1.07413 1.26911 1.48018 1.25758 0.95493 1.02421 0.93514 0.85575 0.79301 0.79590 0.77565 1.18593 1.20263 1.21049 1.21090 0.92450 0.90435 1.53966 0.91967 1.21078 0.90831 0.94369 0.89754 0.96085 1.24604 0.96366 0.89404 0.94113 1.86768 1.56884 1.36211 1.47483 1.26078 0.91749 0.88128 0.93876 1.19228 0.99614 0.96536 0.87752 1.19571 0.93913 0.96985 0.95605 1.21122 1.00066 0.94060 0.96243 1.21144 0.91971 0.99323 1.01487 1.21013 0.92687 0.93884 0.99768 1.98332 1.71558 1.54357 1.80722 1.21143 1.01281 0.94958 0.96313 1.21122 0.93569 0.98398 0.98205 1.75056 1.21815 1.14247 1.11953 0.93310 0.90754 0.87170 0.85800 0.85914 0.84338 0.84175 0.84020 0.84183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.52 13.15 21.45 0.28 -53.24 16 2 C 0.03 1.79 5.45 84.66 0.46 2.25 16 3 Si 0.95 44.23 29.54 68.60 2.03 46.25 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 7 C -0.54 -30.16 8.79 25.60 0.23 -29.93 16 8 H 0.06 3.34 7.61 -2.92 -0.02 3.32 16 9 C 0.15 7.66 3.50 44.66 0.16 7.82 16 10 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 11 C 0.03 1.33 7.73 72.61 0.56 1.89 16 12 O -0.37 -14.59 11.18 -78.65 -0.88 -15.47 16 13 C 0.23 9.18 7.68 88.58 0.68 9.86 16 14 C 0.01 0.17 5.97 29.10 0.17 0.35 16 15 C -0.06 -1.85 4.44 -19.86 -0.09 -1.94 16 16 C -0.10 -2.96 9.70 22.27 0.22 -2.74 16 17 C -0.12 -3.68 9.83 22.29 0.22 -3.46 16 18 C -0.05 -1.45 6.32 22.33 0.14 -1.31 16 19 Cl -0.08 -2.19 28.96 -2.72 -0.08 -2.27 16 20 C -0.12 -3.56 9.83 22.29 0.22 -3.34 16 21 C -0.09 -2.87 9.70 22.26 0.22 -2.65 16 22 N -0.50 -24.70 10.28 -432.78 -4.45 -29.15 16 23 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 24 H 0.07 3.00 7.78 -2.39 -0.02 2.98 16 25 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 26 H 0.12 2.69 8.09 -2.39 -0.02 2.67 16 27 H 0.12 2.70 8.08 -2.39 -0.02 2.68 16 28 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 29 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 30 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 31 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -67.69 291.74 1.22 -66.47 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 1.14 Total: 10.62 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: 3.18 Total: -23.21 kcal Atomic # 7 Polarization: -78.23 SS G_CDS: -4.17 Total: -82.39 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.88 Total: -15.47 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 17 Polarization: -2.19 SS G_CDS: -0.08 Total: -2.27 kcal Total: -67.69 1.22 -66.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260380635.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.552 kcal (2) G-P(sol) polarization free energy of solvation -67.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds