Wall clock time and date at job start Mon Mar 30 2020 06:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 120.00157 * 2 1 4 4 H 1.48498 * 109.47001 * 239.99720 * 3 2 1 5 5 H 1.48501 * 109.46931 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47176 * 119.99560 * 3 2 1 7 7 C 1.37881 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99860 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99822 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.47005 * 179.97438 * 9 7 2 11 11 N 1.28646 * 122.94057 * 359.97438 * 10 9 7 12 12 C 1.47599 * 108.55003 * 179.59063 * 11 10 9 13 13 C 1.54850 * 101.89559 * 345.04754 * 12 11 10 14 14 H 1.09003 * 111.11136 * 265.24645 * 13 12 11 15 15 C 1.50692 * 111.07704 * 141.22205 * 13 12 11 16 16 C 1.38272 * 119.99271 * 106.73872 * 15 13 12 17 17 C 1.38219 * 120.02538 * 180.25739 * 16 15 13 18 18 C 1.38239 * 120.01153 * 359.48343 * 17 16 15 19 19 C 1.38322 * 119.98720 * 0.53564 * 18 17 16 20 20 Cl 1.73608 * 120.01434 * 179.69932 * 19 18 17 21 21 C 1.38194 * 119.99835 * 286.75669 * 15 13 12 22 22 O 1.34599 * 122.94087 * 179.97438 * 10 9 7 23 23 H 0.97003 * 119.99778 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47440 * 59.99634 * 9 7 2 25 25 H 1.09002 * 109.47148 * 299.98890 * 9 7 2 26 26 H 1.09001 * 110.94212 * 226.89690 * 12 11 10 27 27 H 1.08992 * 110.94249 * 103.19986 * 12 11 10 28 28 H 1.08002 * 119.98328 * 359.97146 * 16 15 13 29 29 H 1.08002 * 119.99110 * 179.72232 * 17 16 15 30 30 H 1.08002 * 120.00517 * 180.27776 * 18 17 16 31 31 H 1.08002 * 119.99907 * 359.97438 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0005 11 7 3.5055 -3.4747 0.0001 12 6 4.1557 -4.7997 0.0102 13 6 2.9818 -5.7283 0.4073 14 1 2.9698 -5.9080 1.4824 15 6 3.0361 -7.0268 -0.3554 16 6 3.4206 -8.1897 0.2862 17 6 3.4757 -9.3801 -0.4140 18 6 3.1361 -9.4107 -1.7537 19 6 2.7518 -8.2475 -2.3962 20 17 2.3327 -8.2836 -4.0805 21 6 2.7019 -7.0551 -1.6960 22 8 1.8473 -4.9349 0.0010 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5570 -0.8896 25 1 0.6241 -2.5567 0.8904 26 1 4.9514 -4.8376 0.7543 27 1 4.5366 -5.0544 -0.9787 28 1 3.6824 -8.1670 1.3337 29 1 3.7804 -10.2873 0.0866 30 1 3.1749 -10.3417 -2.2997 31 1 2.4015 -6.1467 -2.1970 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260383390.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:46 Heat of formation + Delta-G solvation = 3.408892 kcal Electronic energy + Delta-G solvation = -16865.551014 eV Core-core repulsion = 13945.349609 eV Total energy + Delta-G solvation = -2920.201405 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.92507 -39.15388 -36.60645 -33.73978 -32.86986 -32.34386 -30.95429 -29.78137 -27.04345 -23.82884 -23.28118 -22.84724 -21.30130 -19.44916 -17.50555 -16.54560 -16.15406 -15.90925 -15.35749 -15.09349 -14.46660 -14.28806 -13.86458 -13.72797 -13.01734 -12.73334 -12.39894 -12.21478 -11.80448 -11.73190 -11.57713 -11.43582 -11.15730 -10.95667 -10.76176 -10.63803 -10.00460 -9.70449 -9.21543 -8.98564 -8.79173 -8.57588 -8.28658 -6.05411 -4.05700 0.89493 1.03177 1.96588 2.95121 3.32343 3.38025 3.40620 3.45281 3.80353 4.43003 4.50892 4.61567 4.71292 4.83313 4.98998 5.03962 5.24286 5.32921 5.37424 5.41316 5.66255 5.74744 5.88157 6.02424 6.05654 6.23905 6.45805 6.56969 7.09524 7.26737 7.33337 7.98713 8.14306 8.65580 9.05911 9.58404 11.06798 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.030074 B = 0.004194 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.828267 B = 6675.125700 C = 7155.104055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.904 3.096 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.081 0.919 9 C 0.084 3.916 10 C 0.324 3.676 11 N -0.535 5.535 12 C -0.002 4.002 13 C 0.083 3.917 14 H 0.098 0.902 15 C -0.065 4.065 16 C -0.103 4.103 17 C -0.108 4.108 18 C -0.111 4.111 19 C -0.034 4.034 20 Cl -0.070 7.070 21 C -0.085 4.085 22 O -0.345 6.345 23 H 0.263 0.737 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.131 0.869 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.206 -19.304 -1.548 20.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.548 4.548 8 H 0.099 0.901 9 C 0.047 3.953 10 C 0.101 3.899 11 N -0.270 5.270 12 C -0.132 4.132 13 C 0.024 3.976 14 H 0.116 0.884 15 C -0.066 4.066 16 C -0.122 4.122 17 C -0.126 4.126 18 C -0.130 4.130 19 C -0.060 4.060 20 Cl -0.041 7.041 21 C -0.104 4.104 22 O -0.250 6.250 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.110 0.890 27 H 0.099 0.901 28 H 0.149 0.851 29 H 0.152 0.848 30 H 0.151 0.849 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.501 -18.681 -1.764 19.858 hybrid contribution 0.116 0.047 -0.116 0.171 sum 6.616 -18.634 -1.880 19.863 Atomic orbital electron populations 1.69952 1.06065 1.27141 1.50782 1.25002 0.94889 0.99462 0.95192 0.86451 0.79312 0.82224 0.78808 1.20130 1.21422 1.20145 1.21131 0.94478 0.88596 1.50644 0.90061 1.18227 0.91324 0.85950 0.99841 1.27029 0.93491 0.83793 0.85625 1.75008 1.05728 1.19499 1.26791 1.24162 0.97719 0.88903 1.02378 1.22842 0.86912 0.89584 0.98217 0.88437 1.19552 0.99579 0.94083 0.93364 1.21053 0.99227 0.91537 1.00349 1.21044 0.99896 0.98145 0.93565 1.21073 0.99780 0.97091 0.95077 1.20902 1.03795 0.95325 0.85996 1.98378 1.91965 1.98833 1.14898 1.20960 0.98240 0.97417 0.93739 1.87057 1.37519 1.17909 1.82510 0.92742 0.92895 0.92854 0.88972 0.90098 0.85062 0.84806 0.84914 0.84451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.20 13.29 55.43 0.74 -25.47 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.28 8.95 -34.44 -0.31 -14.59 16 8 H 0.08 2.30 6.77 -52.48 -0.36 1.95 16 9 C 0.08 2.15 5.60 -29.04 -0.16 1.99 16 10 C 0.32 7.28 7.68 -13.61 -0.10 7.17 16 11 N -0.54 -11.77 10.20 -56.98 -0.58 -12.35 16 12 C 0.00 -0.03 7.66 -2.46 -0.02 -0.05 16 13 C 0.08 1.28 3.96 -26.91 -0.11 1.17 16 14 H 0.10 1.33 8.05 -51.93 -0.42 0.91 16 15 C -0.07 -0.86 5.05 -104.63 -0.53 -1.39 16 16 C -0.10 -1.06 9.69 -39.58 -0.38 -1.45 16 17 C -0.11 -0.96 10.05 -39.59 -0.40 -1.36 16 18 C -0.11 -1.10 9.83 -39.55 -0.39 -1.49 16 19 C -0.03 -0.41 6.32 -39.50 -0.25 -0.66 16 20 Cl -0.07 -0.82 28.96 -51.86 -1.50 -2.32 16 21 C -0.08 -1.18 8.97 -39.55 -0.35 -1.54 16 22 O -0.35 -6.79 10.27 -15.57 -0.16 -6.95 16 23 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 24 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 25 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 26 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.08 1.29 7.76 -51.93 -0.40 0.89 16 28 H 0.13 1.04 8.05 -52.49 -0.42 0.62 16 29 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 30 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.14 2.13 7.80 -52.49 -0.41 1.72 16 LS Contribution 290.06 15.07 4.37 4.37 Total: -1.00 -30.09 290.06 -8.51 -38.60 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -3.26 Total: -1.91 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -3.10 Total: -10.72 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.15 Total: -37.81 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.16 Total: -6.95 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.50 Total: -2.32 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.09 -8.51 -38.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260383390.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.013 kcal (2) G-P(sol) polarization free energy of solvation -30.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds