Wall clock time and date at job start Mon Mar 30 2020 06:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00271 * 2 1 4 4 H 1.48502 * 109.47302 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.47091 * 300.00060 * 3 2 1 6 6 H 1.48499 * 109.47411 * 60.00021 * 3 2 1 7 7 C 1.37874 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00529 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99847 * 0.02562 * 7 2 1 10 10 C 1.50697 * 109.46954 * 180.02562 * 9 7 2 11 11 N 1.28640 * 122.94183 * 359.97240 * 10 9 7 12 12 C 1.47601 * 108.54802 * 180.41206 * 11 10 9 13 13 C 1.54846 * 101.89545 * 14.95051 * 12 11 10 14 14 H 1.08996 * 111.07664 * 94.78129 * 13 12 11 15 15 C 1.50706 * 111.07366 * 218.77878 * 13 12 11 16 16 C 1.38264 * 119.99067 * 264.99544 * 15 13 12 17 17 C 1.38224 * 120.02445 * 180.02562 * 16 15 13 18 18 C 1.38237 * 120.01313 * 0.26351 * 17 16 15 19 19 C 1.38338 * 119.98297 * 359.50743 * 18 17 16 20 20 Cl 1.73597 * 120.00852 * 180.25600 * 19 18 17 21 21 C 1.38189 * 119.99237 * 85.02438 * 15 13 12 22 22 O 1.34595 * 122.93987 * 179.97438 * 10 9 7 23 23 H 0.97010 * 119.99747 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47183 * 59.99646 * 9 7 2 25 25 H 1.09004 * 109.46720 * 299.99515 * 9 7 2 26 26 H 1.09003 * 110.94061 * 256.80090 * 12 11 10 27 27 H 1.08997 * 110.97600 * 133.11664 * 12 11 10 28 28 H 1.07997 * 119.98741 * 359.97438 * 16 15 13 29 29 H 1.08002 * 119.99032 * 179.97438 * 17 16 15 30 30 H 1.07995 * 120.00242 * 179.74655 * 18 17 16 31 31 H 1.08000 * 120.00806 * 0.02562 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2301 -3.6446 0.0018 11 7 3.5053 -3.4748 0.0022 12 6 4.1554 -4.7999 -0.0066 13 6 2.9815 -5.7287 -0.4028 14 1 2.9703 -5.9095 -1.4776 15 6 3.0357 -7.0265 0.3614 16 6 3.6448 -8.1339 -0.1994 17 6 3.6945 -9.3247 0.5006 18 6 3.1303 -9.4106 1.7597 19 6 2.5250 -8.3017 2.3232 20 17 1.8222 -8.4071 3.9070 21 6 2.4762 -7.1097 1.6222 22 8 1.8471 -4.9349 0.0026 23 1 -0.4850 0.8402 -0.0004 24 1 0.6245 -2.5571 -0.8897 25 1 0.6239 -2.5566 0.8904 26 1 4.5362 -5.0535 0.9827 27 1 4.9514 -4.8390 -0.7502 28 1 4.0812 -8.0686 -1.1851 29 1 4.1700 -10.1894 0.0618 30 1 3.1656 -10.3423 2.3048 31 1 1.9997 -6.2449 2.0597 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260383437.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:48 Heat of formation + Delta-G solvation = 3.306734 kcal Electronic energy + Delta-G solvation = -16865.681640 eV Core-core repulsion = 13945.475805 eV Total energy + Delta-G solvation = -2920.205835 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.92712 -39.14798 -36.59821 -33.74820 -32.86844 -32.34856 -30.93769 -29.78468 -27.04910 -23.81387 -23.28374 -22.84408 -21.30166 -19.43783 -17.50957 -16.53606 -16.16410 -15.88487 -15.37054 -15.13248 -14.46820 -14.28317 -13.88123 -13.70688 -12.99455 -12.76044 -12.39563 -12.21217 -11.79040 -11.73065 -11.58300 -11.42498 -11.16752 -10.95717 -10.73351 -10.66183 -10.00573 -9.69820 -9.19509 -8.97762 -8.77649 -8.58260 -8.29356 -6.06064 -4.06157 0.90542 1.04719 1.97642 2.94921 3.33914 3.34715 3.41222 3.48557 3.74717 4.42752 4.50568 4.63638 4.70862 4.84663 5.00006 5.06152 5.25348 5.32545 5.37968 5.40975 5.67215 5.74507 5.88275 6.03939 6.06277 6.22924 6.46825 6.58241 7.09160 7.26350 7.32848 7.98477 8.13812 8.65183 9.06348 9.58156 11.06239 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.030079 B = 0.004207 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.658874 B = 6653.461760 C = 7191.966080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.902 3.098 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.083 0.917 9 C 0.083 3.917 10 C 0.325 3.675 11 N -0.535 5.535 12 C -0.001 4.001 13 C 0.083 3.917 14 H 0.099 0.901 15 C -0.065 4.065 16 C -0.105 4.105 17 C -0.108 4.108 18 C -0.113 4.113 19 C -0.033 4.033 20 Cl -0.070 7.070 21 C -0.086 4.086 22 O -0.346 6.346 23 H 0.262 0.738 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.131 0.869 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.218 -19.273 1.559 20.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.730 3.270 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.547 4.547 8 H 0.101 0.899 9 C 0.046 3.954 10 C 0.101 3.899 11 N -0.270 5.270 12 C -0.131 4.131 13 C 0.025 3.975 14 H 0.116 0.884 15 C -0.066 4.066 16 C -0.124 4.124 17 C -0.126 4.126 18 C -0.132 4.132 19 C -0.060 4.060 20 Cl -0.041 7.041 21 C -0.105 4.105 22 O -0.251 6.251 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.149 0.851 29 H 0.152 0.848 30 H 0.151 0.849 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.495 -18.661 1.766 19.838 hybrid contribution 0.062 0.044 0.104 0.129 sum 6.558 -18.617 1.870 19.826 Atomic orbital electron populations 1.69973 1.06069 1.26919 1.50964 1.25003 0.94891 0.99490 0.95219 0.86354 0.80262 0.82934 0.77431 1.19440 1.21071 1.21060 1.21216 0.94560 0.88567 1.50357 0.89939 1.18242 0.91341 0.85988 0.99856 1.27016 0.93487 0.83758 0.85656 1.75009 1.05733 1.19501 1.26727 1.24143 0.97683 0.88867 1.02388 1.22827 0.86875 0.89602 0.98240 0.88357 1.19562 0.98532 0.94309 0.94177 1.21003 0.99092 0.91926 1.00336 1.21034 0.99574 0.97893 0.94099 1.21072 0.98422 0.97616 0.96044 1.20919 1.01162 0.95733 0.88180 1.98376 1.82877 1.98442 1.24387 1.20986 0.98511 0.97114 0.93850 1.87031 1.37554 1.17951 1.82520 0.92858 0.92835 0.92879 0.90111 0.88964 0.85080 0.84824 0.84942 0.84202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.18 13.29 55.43 0.74 -25.44 16 2 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.51 -14.22 8.95 -34.44 -0.31 -14.53 16 8 H 0.08 2.35 6.76 -52.49 -0.36 1.99 16 9 C 0.08 2.12 5.60 -29.03 -0.16 1.96 16 10 C 0.32 7.27 7.68 -13.62 -0.10 7.16 16 11 N -0.53 -11.75 10.20 -56.99 -0.58 -12.33 16 12 C 0.00 -0.02 7.68 -2.47 -0.02 -0.04 16 13 C 0.08 1.28 3.98 -26.91 -0.11 1.17 16 14 H 0.10 1.34 8.12 -51.93 -0.42 0.92 16 15 C -0.07 -0.86 5.05 -104.63 -0.53 -1.39 16 16 C -0.11 -1.08 9.72 -39.58 -0.38 -1.46 16 17 C -0.11 -0.96 10.05 -39.59 -0.40 -1.36 16 18 C -0.11 -1.12 9.83 -39.55 -0.39 -1.51 16 19 C -0.03 -0.41 6.32 -39.50 -0.25 -0.66 16 20 Cl -0.07 -0.83 28.96 -51.86 -1.50 -2.33 16 21 C -0.09 -1.20 9.17 -39.55 -0.36 -1.57 16 22 O -0.35 -6.76 9.89 -15.56 -0.15 -6.91 16 23 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 25 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 26 H 0.08 1.29 7.91 -51.93 -0.41 0.88 16 27 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 30 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.14 2.19 7.47 -52.49 -0.39 1.80 16 LS Contribution 289.85 15.07 4.37 4.37 Total: -1.00 -30.09 289.85 -8.51 -38.61 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: -3.25 Total: -1.88 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -3.11 Total: -10.77 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.15 Total: -37.77 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.15 Total: -6.91 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.09 -8.51 -38.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260383437.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.914 kcal (2) G-P(sol) polarization free energy of solvation -30.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds