Wall clock time and date at job start Mon Mar 30 2020 06:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00271 * 2 1 4 4 H 1.48502 * 109.47302 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.47091 * 300.00060 * 3 2 1 6 6 H 1.48499 * 109.47411 * 60.00021 * 3 2 1 7 7 C 1.37874 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00529 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99847 * 0.02562 * 7 2 1 10 10 C 1.50697 * 109.46954 * 180.02562 * 9 7 2 11 11 N 1.28640 * 122.94183 * 359.97240 * 10 9 7 12 12 C 1.47601 * 108.54802 * 180.41206 * 11 10 9 13 13 C 1.54846 * 101.89545 * 14.95051 * 12 11 10 14 14 H 1.08996 * 111.07664 * 94.78129 * 13 12 11 15 15 C 1.50706 * 111.07366 * 218.77878 * 13 12 11 16 16 C 1.38264 * 119.99067 * 264.99544 * 15 13 12 17 17 C 1.38224 * 120.02445 * 180.02562 * 16 15 13 18 18 C 1.38237 * 120.01313 * 0.26351 * 17 16 15 19 19 C 1.38338 * 119.98297 * 359.50743 * 18 17 16 20 20 Cl 1.73597 * 120.00852 * 180.25600 * 19 18 17 21 21 C 1.38189 * 119.99237 * 85.02438 * 15 13 12 22 22 O 1.34595 * 122.93987 * 179.97438 * 10 9 7 23 23 H 0.97010 * 119.99747 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47183 * 59.99646 * 9 7 2 25 25 H 1.09004 * 109.46720 * 299.99515 * 9 7 2 26 26 H 1.09003 * 110.94061 * 256.80090 * 12 11 10 27 27 H 1.08997 * 110.97600 * 133.11664 * 12 11 10 28 28 H 1.07997 * 119.98741 * 359.97438 * 16 15 13 29 29 H 1.08002 * 119.99032 * 179.97438 * 17 16 15 30 30 H 1.07995 * 120.00242 * 179.74655 * 18 17 16 31 31 H 1.08000 * 120.00806 * 0.02562 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2301 -3.6446 0.0018 11 7 3.5053 -3.4748 0.0022 12 6 4.1554 -4.7999 -0.0066 13 6 2.9815 -5.7287 -0.4028 14 1 2.9703 -5.9095 -1.4776 15 6 3.0357 -7.0265 0.3614 16 6 3.6448 -8.1339 -0.1994 17 6 3.6945 -9.3247 0.5006 18 6 3.1303 -9.4106 1.7597 19 6 2.5250 -8.3017 2.3232 20 17 1.8222 -8.4071 3.9070 21 6 2.4762 -7.1097 1.6222 22 8 1.8471 -4.9349 0.0026 23 1 -0.4850 0.8402 -0.0004 24 1 0.6245 -2.5571 -0.8897 25 1 0.6239 -2.5566 0.8904 26 1 4.5362 -5.0535 0.9827 27 1 4.9514 -4.8390 -0.7502 28 1 4.0812 -8.0686 -1.1851 29 1 4.1700 -10.1894 0.0618 30 1 3.1656 -10.3423 2.3048 31 1 1.9997 -6.2449 2.0597 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260383437.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:47 Heat of formation + Delta-G solvation = -16.496326 kcal Electronic energy + Delta-G solvation = -16866.540365 eV Core-core repulsion = 13945.475805 eV Total energy + Delta-G solvation = -2921.064560 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.34484 -40.10804 -37.50984 -35.65555 -34.41574 -33.73467 -31.79732 -31.43709 -28.55845 -25.63488 -24.68743 -23.73287 -22.38401 -21.08628 -18.53471 -18.33639 -17.72507 -17.18682 -16.65717 -16.28256 -16.12540 -15.62675 -14.72918 -14.66450 -14.51418 -14.32919 -14.09857 -13.55265 -13.37994 -13.04478 -12.75064 -12.66879 -12.53434 -12.40913 -12.32386 -11.96188 -11.88252 -11.51684 -10.94433 -10.63526 -10.02378 -9.92981 -9.71094 -8.21672 -6.29166 0.04888 0.17538 1.08195 1.26470 1.44187 1.44929 1.59593 2.20461 2.47252 2.61754 3.14490 3.27163 3.42510 3.77832 3.83973 3.94837 4.14074 4.22857 4.38396 4.40792 4.53395 4.66441 4.83057 4.93022 5.12535 5.19698 5.22765 5.29028 5.39695 5.41366 5.75282 5.80831 6.06348 6.82737 7.01027 7.39258 8.91521 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.030079 B = 0.004207 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.658874 B = 6653.461760 C = 7191.966080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.970 3.030 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.278 1.278 7 C -0.524 4.524 8 H 0.075 0.925 9 C 0.087 3.913 10 C 0.318 3.682 11 N -0.560 5.560 12 C 0.000 4.000 13 C 0.085 3.915 14 H 0.120 0.880 15 C -0.083 4.083 16 C -0.096 4.096 17 C -0.095 4.095 18 C -0.107 4.107 19 C -0.046 4.046 20 Cl -0.076 7.076 21 C -0.111 4.111 22 O -0.357 6.357 23 H 0.266 0.734 24 H 0.039 0.961 25 H 0.033 0.967 26 H 0.085 0.915 27 H 0.121 0.879 28 H 0.161 0.839 29 H 0.176 0.824 30 H 0.158 0.842 31 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.215 -21.151 0.669 22.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.192 4.192 3 Si 0.795 3.205 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.094 0.906 9 C 0.049 3.951 10 C 0.094 3.906 11 N -0.296 5.296 12 C -0.129 4.129 13 C 0.028 3.972 14 H 0.138 0.862 15 C -0.083 4.083 16 C -0.114 4.114 17 C -0.112 4.112 18 C -0.125 4.125 19 C -0.073 4.073 20 Cl -0.047 7.047 21 C -0.130 4.130 22 O -0.262 6.262 23 H 0.075 0.925 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.103 0.897 27 H 0.139 0.861 28 H 0.179 0.821 29 H 0.193 0.807 30 H 0.176 0.824 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.493 -20.563 0.876 22.265 hybrid contribution -0.515 0.481 0.387 0.804 sum 7.979 -20.082 1.263 21.646 Atomic orbital electron populations 1.70076 1.07494 1.28037 1.51549 1.25860 0.95753 1.02994 0.94639 0.85314 0.78842 0.78535 0.77833 1.19195 1.20077 1.20340 1.21426 0.94374 0.89856 1.50547 0.90649 1.17907 0.91679 0.87231 0.98247 1.26228 0.93116 0.84214 0.87063 1.74888 1.05760 1.23338 1.25602 1.24261 0.98404 0.86656 1.03605 1.23083 0.84572 0.89783 0.99793 0.86222 1.19491 1.00526 0.94373 0.93931 1.21351 0.97618 0.91024 1.01441 1.21521 0.97988 0.98563 0.93147 1.21464 0.96912 0.97554 0.96580 1.21039 1.02099 0.96033 0.88123 1.98369 1.83112 1.98424 1.24821 1.20834 1.00153 0.97081 0.94950 1.86995 1.39556 1.17070 1.82593 0.92489 0.94347 0.94920 0.89733 0.86146 0.82093 0.80686 0.82424 0.87380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.34 13.29 21.45 0.28 -55.06 16 2 C 0.01 0.31 5.46 84.65 0.46 0.77 16 3 Si 0.97 44.85 29.54 68.60 2.03 46.88 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 7 C -0.52 -30.12 8.95 25.60 0.23 -29.89 16 8 H 0.08 4.37 6.76 -2.91 -0.02 4.35 16 9 C 0.09 4.67 5.60 29.10 0.16 4.83 16 10 C 0.32 14.75 7.68 88.57 0.68 15.43 16 11 N -0.56 -24.86 10.20 -449.44 -4.59 -29.44 16 12 C 0.00 -0.01 7.68 86.80 0.67 0.66 16 13 C 0.08 2.53 3.98 30.48 0.12 2.65 16 14 H 0.12 3.01 8.12 -2.39 -0.02 2.99 16 15 C -0.08 -2.06 5.05 -19.87 -0.10 -2.16 16 16 C -0.10 -1.60 9.72 22.27 0.22 -1.38 16 17 C -0.09 -1.24 10.05 22.27 0.22 -1.02 16 18 C -0.11 -1.77 9.83 22.29 0.22 -1.55 16 19 C -0.05 -1.09 6.32 22.33 0.14 -0.95 16 20 Cl -0.08 -1.79 28.96 -2.72 -0.08 -1.87 16 21 C -0.11 -3.13 9.17 22.29 0.20 -2.93 16 22 O -0.36 -14.40 9.89 -78.60 -0.78 -15.17 16 23 H 0.27 14.81 8.31 -92.70 -0.77 14.04 16 24 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.03 1.85 8.14 -2.38 -0.02 1.83 16 26 H 0.08 2.65 7.91 -2.39 -0.02 2.63 16 27 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 28 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 29 H 0.18 0.93 8.06 -2.91 -0.02 0.90 16 30 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 31 H 0.11 3.65 7.47 -2.91 -0.02 3.63 16 Total: -1.00 -67.13 289.85 1.24 -65.89 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: 1.14 Total: 4.30 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 3.23 Total: -15.53 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -4.30 Total: -84.50 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.78 Total: -15.17 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -0.08 Total: -1.87 kcal Total: -67.13 1.24 -65.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260383437.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.397 kcal (2) G-P(sol) polarization free energy of solvation -67.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds