Wall clock time and date at job start Mon Mar 30 2020 06:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99743 * 2 1 4 4 H 1.48501 * 109.46770 * 239.99709 * 3 2 1 5 5 H 1.48499 * 109.47133 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47112 * 120.00242 * 3 2 1 7 7 C 1.37878 * 120.00469 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00381 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99399 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.86587 * 56.25856 * 9 7 2 11 11 C 1.54857 * 110.94276 * 180.02562 * 9 7 2 12 12 O 1.44267 * 101.19684 * 141.39520 * 11 9 7 13 13 C 1.34603 * 107.66570 * 335.36297 * 12 11 9 14 14 C 1.50701 * 122.93385 * 197.19604 * 13 12 11 15 15 C 1.50709 * 109.46975 * 179.97438 * 14 13 12 16 16 C 1.38240 * 120.00363 * 99.99664 * 15 14 13 17 17 C 1.38214 * 120.00965 * 180.02562 * 16 15 14 18 18 C 1.38261 * 120.02948 * 0.02562 * 17 16 15 19 19 C 1.38192 * 120.01200 * 359.97438 * 18 17 16 20 20 C 1.38329 * 120.00588 * 279.72843 * 15 14 13 21 21 Cl 1.73593 * 120.01501 * 359.97251 * 20 15 14 22 22 N 1.28631 * 114.12593 * 17.19208 * 13 12 11 23 23 H 0.96996 * 119.99782 * 359.97438 * 1 2 3 24 24 H 1.08998 * 111.07441 * 259.37550 * 11 9 7 25 25 H 1.08995 * 111.07418 * 23.37206 * 11 9 7 26 26 H 1.09002 * 109.47210 * 299.96862 * 14 13 12 27 27 H 1.08995 * 109.47765 * 59.97437 * 14 13 12 28 28 H 1.08002 * 119.99620 * 0.02562 * 16 15 14 29 29 H 1.08004 * 119.98732 * 179.97438 * 17 16 15 30 30 H 1.08007 * 119.99549 * 179.97438 * 18 17 16 31 31 H 1.08006 * 120.00561 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.5668 -2.5522 -0.8472 11 6 2.2269 -3.7016 -0.0005 12 8 1.5446 -4.6159 0.8825 13 6 0.7525 -3.8881 1.6916 14 6 0.1765 -4.4270 2.9756 15 6 -0.6594 -3.3618 3.6373 16 6 -2.0358 -3.3851 3.5105 17 6 -2.8025 -2.4079 4.1168 18 6 -2.1935 -1.4064 4.8500 19 6 -0.8177 -1.3821 4.9775 20 6 -0.0499 -2.3638 4.3762 21 17 1.6779 -2.3383 4.5423 22 7 0.5303 -2.6922 1.2729 23 1 -0.4849 0.8400 0.0004 24 1 2.3282 -4.1241 -1.0002 25 1 3.1988 -3.4177 0.4029 26 1 -0.4463 -5.2948 2.7584 27 1 0.9871 -4.7195 3.6430 28 1 -2.5121 -4.1669 2.9375 29 1 -3.8778 -2.4262 4.0172 30 1 -2.7931 -0.6428 5.3233 31 1 -0.3421 -0.5999 5.5506 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260413862.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:09 Heat of formation + Delta-G solvation = -15.392831 kcal Electronic energy + Delta-G solvation = -17753.406243 eV Core-core repulsion = 14832.389534 eV Total energy + Delta-G solvation = -2921.016709 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.68745 -40.12304 -37.25351 -35.33723 -34.84032 -33.16119 -31.56087 -30.84655 -28.09891 -26.75968 -23.56039 -22.94068 -22.88484 -20.68314 -18.71338 -17.86100 -17.58241 -16.88833 -16.50793 -16.38557 -16.04968 -15.67617 -14.66830 -14.41549 -14.33149 -14.06752 -13.78355 -13.70534 -13.35377 -12.76177 -12.54823 -12.49082 -12.42489 -12.29425 -12.05386 -11.98490 -11.58557 -11.47324 -10.70770 -10.47102 -9.73461 -9.60399 -9.45198 -8.12789 -6.30570 0.33459 0.43770 1.34012 1.36781 1.39546 1.45873 1.69999 2.38544 2.52984 2.97069 3.13783 3.62580 3.90610 3.98438 4.17048 4.23922 4.31619 4.41246 4.51126 4.56673 4.69215 4.71673 4.86787 5.04077 5.08118 5.32308 5.39682 5.51945 5.58040 5.67668 5.81382 6.02076 6.17048 6.68646 7.34942 7.42637 8.94647 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.016230 B = 0.008804 C = 0.007363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.747769 B = 3179.521639 C = 3801.833905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.037 3.963 3 Si 0.950 3.050 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.276 1.276 7 C -0.540 4.540 8 H 0.057 0.943 9 C 0.151 3.849 10 H 0.024 0.976 11 C 0.031 3.969 12 O -0.369 6.369 13 C 0.231 3.769 14 C 0.002 3.998 15 C -0.068 4.068 16 C -0.102 4.102 17 C -0.119 4.119 18 C -0.111 4.111 19 C -0.130 4.130 20 C -0.026 4.026 21 Cl -0.085 7.085 22 N -0.486 5.486 23 H 0.259 0.741 24 H 0.111 0.889 25 H 0.069 0.931 26 H 0.127 0.873 27 H 0.106 0.894 28 H 0.147 0.853 29 H 0.155 0.845 30 H 0.155 0.845 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.978 -6.682 10.030 12.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.167 4.167 3 Si 0.775 3.225 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.202 1.202 7 C -0.579 4.579 8 H 0.076 0.924 9 C 0.043 3.957 10 H 0.042 0.958 11 C -0.046 4.046 12 O -0.275 6.275 13 C 0.002 3.998 14 C -0.036 4.036 15 C -0.069 4.069 16 C -0.120 4.120 17 C -0.136 4.136 18 C -0.129 4.129 19 C -0.148 4.148 20 C -0.053 4.053 21 Cl -0.056 7.056 22 N -0.218 5.218 23 H 0.068 0.932 24 H 0.129 0.871 25 H 0.087 0.913 26 H 0.145 0.855 27 H 0.124 0.876 28 H 0.165 0.835 29 H 0.173 0.827 30 H 0.172 0.828 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.374 -5.981 10.150 12.567 hybrid contribution 1.305 0.709 -0.746 1.662 sum -3.069 -5.272 9.404 11.209 Atomic orbital electron populations 1.70156 1.07254 1.26997 1.47942 1.25673 0.95470 1.02098 0.93450 0.85763 0.78602 0.79299 0.78851 1.18920 1.20697 1.20194 1.20974 0.92237 0.90526 1.54131 0.92440 1.21048 0.90757 0.94121 0.89756 0.95813 1.24602 0.96329 0.89683 0.93981 1.86751 1.56915 1.36278 1.47544 1.25836 0.92071 0.88241 0.93647 1.19174 0.99381 0.96897 0.88100 1.19336 0.94643 0.96041 0.96868 1.21250 0.91709 1.00272 0.98753 1.21513 1.01480 0.94016 0.96628 1.21395 0.93328 0.99168 0.99043 1.21213 0.94894 0.97701 1.01021 1.20934 0.83940 0.98447 1.01975 1.98337 1.12479 1.98131 1.96648 1.75035 1.21630 1.13499 1.11593 0.93229 0.87076 0.91293 0.85548 0.87582 0.83516 0.82717 0.82759 0.84766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.47 13.15 21.45 0.28 -53.18 16 2 C 0.04 2.10 5.44 84.65 0.46 2.56 16 3 Si 0.95 44.83 29.54 68.60 2.03 46.85 16 4 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 7 C -0.54 -30.82 8.78 25.60 0.22 -30.59 16 8 H 0.06 3.19 7.61 -2.91 -0.02 3.17 16 9 C 0.15 8.04 3.51 44.67 0.16 8.20 16 10 H 0.02 1.41 8.14 -2.39 -0.02 1.39 16 11 C 0.03 1.35 7.73 72.62 0.56 1.91 16 12 O -0.37 -15.66 11.17 -78.68 -0.88 -16.54 16 13 C 0.23 9.87 7.47 88.58 0.66 10.53 16 14 C 0.00 0.07 5.44 29.11 0.16 0.23 16 15 C -0.07 -2.27 4.47 -19.84 -0.09 -2.36 16 16 C -0.10 -2.93 9.67 22.26 0.22 -2.71 16 17 C -0.12 -3.04 10.05 22.27 0.22 -2.81 16 18 C -0.11 -2.95 10.05 22.26 0.22 -2.73 16 19 C -0.13 -4.08 9.83 22.29 0.22 -3.86 16 20 C -0.03 -0.93 6.25 22.32 0.14 -0.80 16 21 Cl -0.08 -3.10 27.34 -2.72 -0.07 -3.17 16 22 N -0.49 -24.79 10.23 -432.77 -4.43 -29.22 16 23 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 24 H 0.11 4.22 8.14 -2.39 -0.02 4.20 16 25 H 0.07 2.99 7.78 -2.39 -0.02 2.97 16 26 H 0.13 3.16 8.00 -2.39 -0.02 3.14 16 27 H 0.11 3.14 7.34 -2.39 -0.02 3.12 16 28 H 0.15 3.47 8.04 -2.91 -0.02 3.44 16 29 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 30 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 31 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -69.38 288.97 1.22 -68.15 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 1.14 Total: 9.53 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: 3.16 Total: -22.43 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -4.14 Total: -82.40 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.88 Total: -16.54 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Atomic # 17 Polarization: -3.10 SS G_CDS: -0.07 Total: -3.17 kcal Total: -69.38 1.22 -68.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260413862.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.759 kcal (2) G-P(sol) polarization free energy of solvation -69.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds