Wall clock time and date at job start Mon Mar 30 2020 06:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99675 * 359.72032 * 7 2 1 9 9 C 1.50695 * 119.99721 * 179.97438 * 7 2 1 10 10 H 1.08998 * 110.84070 * 300.69935 * 9 7 2 11 11 C 1.54850 * 110.94255 * 176.97491 * 9 7 2 12 12 O 1.44276 * 101.19854 * 218.60965 * 11 9 7 13 13 C 1.34602 * 107.66383 * 24.63704 * 12 11 9 14 14 C 1.50706 * 122.93628 * 162.79947 * 13 12 11 15 15 C 1.50699 * 109.46782 * 180.02562 * 14 13 12 16 16 C 1.38234 * 120.00868 * 100.00268 * 15 14 13 17 17 C 1.38217 * 120.01561 * 179.97438 * 16 15 14 18 18 C 1.38268 * 120.02343 * 0.03891 * 17 16 15 19 19 C 1.38188 * 120.01331 * 359.97438 * 18 17 16 20 20 C 1.38325 * 120.00361 * 279.71902 * 15 14 13 21 21 Cl 1.73599 * 120.01776 * 359.97438 * 20 15 14 22 22 N 1.28702 * 114.13386 * 342.77434 * 13 12 11 23 23 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 24 24 H 1.09001 * 111.07608 * 336.58465 * 11 9 7 25 25 H 1.08998 * 111.08248 * 100.58412 * 11 9 7 26 26 H 1.09004 * 109.46568 * 300.02628 * 14 13 12 27 27 H 1.08998 * 109.46916 * 60.02407 * 14 13 12 28 28 H 1.08003 * 119.98966 * 359.97438 * 16 15 14 29 29 H 1.08001 * 119.98912 * 180.02562 * 17 16 15 30 30 H 1.07999 * 119.98907 * 179.97438 * 18 17 16 31 31 H 1.08008 * 120.00437 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 0.0036 9 6 3.5115 -1.1941 -0.0011 10 1 3.8989 -0.6738 -0.8771 11 6 4.0651 -2.6383 0.0747 12 8 5.1984 -2.4584 0.9491 13 6 4.9643 -1.3675 1.7020 14 6 5.7194 -1.0710 2.9721 15 6 5.2149 0.2185 3.5669 16 6 4.3140 0.1906 4.6150 17 6 3.8517 1.3732 5.1610 18 6 4.2894 2.5848 4.6587 19 6 5.1898 2.6140 3.6108 20 6 5.6579 1.4303 3.0681 21 17 6.7954 1.4662 1.7572 22 7 4.0396 -0.5993 1.2423 23 1 -0.4850 0.8401 0.0004 24 1 3.3337 -3.3158 0.5153 25 1 4.3793 -2.9898 -0.9081 26 1 5.5673 -1.8831 3.6831 27 1 6.7822 -0.9772 2.7495 28 1 3.9714 -0.7555 5.0073 29 1 3.1482 1.3509 5.9801 30 1 3.9275 3.5085 5.0855 31 1 5.5319 3.5605 3.2189 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260413866.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:11 Heat of formation + Delta-G solvation = 11.929081 kcal Electronic energy + Delta-G solvation = -17866.627739 eV Core-core repulsion = 14946.795797 eV Total energy + Delta-G solvation = -2919.831942 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.22819 -39.07865 -36.16687 -33.66241 -33.38001 -31.62361 -30.55276 -29.49367 -26.76999 -25.02648 -22.54025 -21.80050 -20.77562 -19.41252 -16.91358 -16.78226 -16.12990 -15.54507 -15.32651 -15.01504 -14.40624 -13.84572 -13.66777 -13.16028 -13.09443 -12.58734 -12.57891 -12.05970 -11.95434 -11.45350 -11.26748 -11.22924 -10.77664 -10.68880 -10.51905 -10.20844 -9.93911 -9.71586 -8.94269 -8.70789 -8.43952 -8.33207 -7.98844 -6.08773 -4.17428 1.35964 1.45058 2.40457 3.10330 3.43596 3.52192 3.70068 3.84848 4.19005 4.61837 4.73189 4.92270 5.06923 5.12816 5.37377 5.44128 5.50691 5.65598 5.72403 5.83772 5.89979 5.94262 6.05348 6.27456 6.37648 6.52184 6.54838 6.59916 6.92635 6.98245 7.29623 7.65142 8.38560 8.69595 8.90227 9.54883 11.01013 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.016530 B = 0.009827 C = 0.008135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.483844 B = 2848.661711 C = 3441.140265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.091 3.909 3 Si 0.860 3.140 4 H -0.291 1.291 5 H -0.295 1.295 6 H -0.205 1.205 7 C -0.516 4.516 8 H 0.075 0.925 9 C 0.123 3.877 10 H 0.054 0.946 11 C 0.035 3.965 12 O -0.366 6.366 13 C 0.244 3.756 14 C -0.003 4.003 15 C -0.050 4.050 16 C -0.091 4.091 17 C -0.116 4.116 18 C -0.112 4.112 19 C -0.115 4.115 20 C -0.008 4.008 21 Cl -0.072 7.072 22 N -0.484 5.484 23 H 0.264 0.736 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.130 0.870 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.593 2.391 9.661 16.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.114 4.114 3 Si 0.686 3.314 4 H -0.218 1.218 5 H -0.221 1.221 6 H -0.126 1.126 7 C -0.554 4.554 8 H 0.093 0.907 9 C 0.016 3.984 10 H 0.071 0.929 11 C -0.042 4.042 12 O -0.271 6.271 13 C 0.016 3.984 14 C -0.041 4.041 15 C -0.051 4.051 16 C -0.109 4.109 17 C -0.134 4.134 18 C -0.130 4.130 19 C -0.133 4.133 20 C -0.034 4.034 21 Cl -0.043 7.043 22 N -0.217 5.217 23 H 0.074 0.926 24 H 0.094 0.906 25 H 0.108 0.892 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.148 0.852 29 H 0.144 0.856 30 H 0.145 0.855 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 12.235 3.121 9.628 15.879 hybrid contribution 0.193 0.229 -0.757 0.814 sum 12.428 3.350 8.872 15.632 Atomic orbital electron populations 1.69923 1.06732 1.27411 1.49129 1.24906 0.94532 0.99723 0.92258 0.87092 0.84224 0.81973 0.78069 1.21797 1.22138 1.12647 1.20624 0.86457 0.94833 1.53485 0.90652 1.21579 0.98194 0.88403 0.90225 0.92878 1.24520 0.85804 1.00886 0.92950 1.86777 1.43391 1.46344 1.50619 1.24985 0.94609 0.85758 0.93066 1.19011 0.99097 0.95039 0.90908 1.19188 0.97373 0.92718 0.95818 1.20948 0.95555 0.98844 0.95591 1.21142 0.99627 0.92325 1.00337 1.21028 0.97208 0.98286 0.96480 1.20954 0.98395 0.96780 0.97206 1.20665 0.96372 0.94563 0.91848 1.98349 1.59105 1.98799 1.48035 1.75220 1.08497 1.26600 1.11389 0.92615 0.90626 0.89159 0.88456 0.88458 0.85236 0.85624 0.85540 0.85393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 2 C 0.09 2.69 5.47 -17.82 -0.10 2.59 16 3 Si 0.86 22.54 27.06 -169.99 -4.60 17.94 16 4 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 5 H -0.29 -7.81 7.11 56.52 0.40 -7.40 16 6 H -0.20 -5.19 5.42 56.52 0.31 -4.88 16 7 C -0.52 -14.76 9.37 -34.44 -0.32 -15.09 16 8 H 0.08 2.29 7.88 -52.48 -0.41 1.88 16 9 C 0.12 3.01 2.95 -67.51 -0.20 2.81 16 10 H 0.05 1.33 7.59 -51.93 -0.39 0.93 16 11 C 0.03 0.72 7.72 38.13 0.29 1.02 16 12 O -0.37 -7.36 11.17 -15.58 -0.17 -7.53 16 13 C 0.24 4.87 7.47 -13.59 -0.10 4.77 16 14 C 0.00 -0.04 5.44 -29.03 -0.16 -0.20 16 15 C -0.05 -0.79 4.47 -104.59 -0.47 -1.26 16 16 C -0.09 -1.32 9.67 -39.59 -0.38 -1.70 16 17 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 18 C -0.11 -1.48 10.05 -39.59 -0.40 -1.88 16 19 C -0.11 -1.67 9.83 -39.55 -0.39 -2.06 16 20 C -0.01 -0.13 6.25 -39.50 -0.25 -0.37 16 21 Cl -0.07 -1.15 27.34 -51.86 -1.42 -2.57 16 22 N -0.48 -11.23 7.60 -51.71 -0.39 -11.62 16 23 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 24 H 0.08 1.58 7.79 -51.93 -0.40 1.17 16 25 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 26 H 0.10 1.23 8.00 -51.93 -0.42 0.81 16 27 H 0.10 1.34 7.34 -51.93 -0.38 0.95 16 28 H 0.13 1.62 8.04 -52.48 -0.42 1.20 16 29 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 31 H 0.13 1.63 8.06 -52.48 -0.42 1.20 16 LS Contribution 282.77 15.07 4.26 4.26 Total: -1.00 -33.08 282.77 -7.77 -40.85 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -3.35 Total: -0.87 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -2.87 Total: -13.31 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.38 Total: -38.77 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -0.17 Total: -7.53 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.60 Total: 17.94 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -1.42 Total: -2.57 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -33.08 -7.77 -40.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260413866.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.774 kcal (2) G-P(sol) polarization free energy of solvation -33.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds