Wall clock time and date at job start Mon Mar 30 2020 06:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99675 * 359.72032 * 7 2 1 9 9 C 1.50695 * 119.99721 * 179.97438 * 7 2 1 10 10 H 1.08998 * 110.84070 * 300.69935 * 9 7 2 11 11 C 1.54850 * 110.94255 * 176.97491 * 9 7 2 12 12 O 1.44276 * 101.19854 * 218.60965 * 11 9 7 13 13 C 1.34602 * 107.66383 * 24.63704 * 12 11 9 14 14 C 1.50706 * 122.93628 * 162.79947 * 13 12 11 15 15 C 1.50699 * 109.46782 * 180.02562 * 14 13 12 16 16 C 1.38234 * 120.00868 * 100.00268 * 15 14 13 17 17 C 1.38217 * 120.01561 * 179.97438 * 16 15 14 18 18 C 1.38268 * 120.02343 * 0.03891 * 17 16 15 19 19 C 1.38188 * 120.01331 * 359.97438 * 18 17 16 20 20 C 1.38325 * 120.00361 * 279.71902 * 15 14 13 21 21 Cl 1.73599 * 120.01776 * 359.97438 * 20 15 14 22 22 N 1.28702 * 114.13386 * 342.77434 * 13 12 11 23 23 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 24 24 H 1.09001 * 111.07608 * 336.58465 * 11 9 7 25 25 H 1.08998 * 111.08248 * 100.58412 * 11 9 7 26 26 H 1.09004 * 109.46568 * 300.02628 * 14 13 12 27 27 H 1.08998 * 109.46916 * 60.02407 * 14 13 12 28 28 H 1.08003 * 119.98966 * 359.97438 * 16 15 14 29 29 H 1.08001 * 119.98912 * 180.02562 * 17 16 15 30 30 H 1.07999 * 119.98907 * 179.97438 * 18 17 16 31 31 H 1.08008 * 120.00437 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 0.0036 9 6 3.5115 -1.1941 -0.0011 10 1 3.8989 -0.6738 -0.8771 11 6 4.0651 -2.6383 0.0747 12 8 5.1984 -2.4584 0.9491 13 6 4.9643 -1.3675 1.7020 14 6 5.7194 -1.0710 2.9721 15 6 5.2149 0.2185 3.5669 16 6 4.3140 0.1906 4.6150 17 6 3.8517 1.3732 5.1610 18 6 4.2894 2.5848 4.6587 19 6 5.1898 2.6140 3.6108 20 6 5.6579 1.4303 3.0681 21 17 6.7954 1.4662 1.7572 22 7 4.0396 -0.5993 1.2423 23 1 -0.4850 0.8401 0.0004 24 1 3.3337 -3.3158 0.5153 25 1 4.3793 -2.9898 -0.9081 26 1 5.5673 -1.8831 3.6831 27 1 6.7822 -0.9772 2.7495 28 1 3.9714 -0.7555 5.0073 29 1 3.1482 1.3509 5.9801 30 1 3.9275 3.5085 5.0855 31 1 5.5319 3.5605 3.2189 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260413866.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:11 Heat of formation + Delta-G solvation = -10.331395 kcal Electronic energy + Delta-G solvation = -17867.593025 eV Core-core repulsion = 14946.795797 eV Total energy + Delta-G solvation = -2920.797228 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.85647 -40.18956 -37.31958 -35.41697 -34.92245 -33.53377 -31.62422 -31.03538 -28.20805 -26.92579 -23.60121 -22.98181 -22.69399 -20.91049 -19.00309 -17.93347 -17.69299 -17.11436 -16.57090 -16.32783 -15.99076 -15.70661 -14.80501 -14.70180 -14.46650 -14.19434 -13.95933 -13.80484 -13.46944 -12.76345 -12.58937 -12.44434 -12.37271 -12.18692 -12.10130 -11.99178 -11.76915 -11.64038 -11.00935 -10.33339 -9.78888 -9.74309 -9.52599 -8.36184 -6.46768 0.27242 0.38395 1.26144 1.34116 1.38935 1.50647 1.77116 2.41668 2.46015 2.88477 3.00267 3.50171 3.84978 3.87679 4.07563 4.14060 4.23969 4.37077 4.47178 4.53678 4.64473 4.67141 4.77560 4.86467 5.01798 5.09724 5.33800 5.45371 5.48841 5.54635 5.75200 5.96236 6.12532 6.55796 7.10066 7.29739 8.77032 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.016530 B = 0.009827 C = 0.008135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.483844 B = 2848.661711 C = 3441.140265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.040 3.960 3 Si 0.920 3.080 4 H -0.292 1.292 5 H -0.299 1.299 6 H -0.191 1.191 7 C -0.514 4.514 8 H 0.043 0.957 9 C 0.118 3.882 10 H 0.047 0.953 11 C 0.041 3.959 12 O -0.360 6.360 13 C 0.262 3.738 14 C -0.002 4.002 15 C -0.070 4.070 16 C -0.102 4.102 17 C -0.121 4.121 18 C -0.113 4.113 19 C -0.129 4.129 20 C -0.028 4.028 21 Cl -0.081 7.081 22 N -0.520 5.520 23 H 0.265 0.735 24 H 0.072 0.928 25 H 0.119 0.881 26 H 0.129 0.871 27 H 0.115 0.885 28 H 0.145 0.855 29 H 0.152 0.848 30 H 0.155 0.845 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.159 2.734 10.999 18.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.160 4.160 3 Si 0.744 3.256 4 H -0.219 1.219 5 H -0.226 1.226 6 H -0.112 1.112 7 C -0.552 4.552 8 H 0.061 0.939 9 C 0.010 3.990 10 H 0.065 0.935 11 C -0.036 4.036 12 O -0.265 6.265 13 C 0.034 3.966 14 C -0.040 4.040 15 C -0.071 4.071 16 C -0.120 4.120 17 C -0.139 4.139 18 C -0.131 4.131 19 C -0.148 4.148 20 C -0.054 4.054 21 Cl -0.052 7.052 22 N -0.254 5.254 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.137 0.863 26 H 0.147 0.853 27 H 0.133 0.867 28 H 0.163 0.837 29 H 0.170 0.830 30 H 0.172 0.828 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 13.826 3.445 10.972 17.984 hybrid contribution -0.274 0.036 -1.112 1.146 sum 13.552 3.481 9.860 17.117 Atomic orbital electron populations 1.70037 1.08252 1.28143 1.51534 1.25654 0.95077 1.02929 0.92368 0.86198 0.83454 0.78044 0.77859 1.21908 1.22632 1.11187 1.20849 0.89019 0.93356 1.52007 0.93895 1.21401 0.95586 0.90935 0.91067 0.93516 1.24473 0.85923 0.98645 0.94531 1.86802 1.42867 1.46361 1.50455 1.25815 0.93215 0.84222 0.93346 1.19262 0.99309 0.96167 0.89213 1.19333 0.98363 0.92672 0.96708 1.21273 0.95191 1.00159 0.95405 1.21545 0.99603 0.92007 1.00752 1.21436 0.96280 0.99610 0.95750 1.21260 0.98775 0.96991 0.97727 1.20915 0.96969 0.95402 0.92155 1.98338 1.59458 1.98832 1.48535 1.75104 1.11086 1.27975 1.11236 0.92585 0.91024 0.86324 0.85341 0.86724 0.83694 0.83042 0.82752 0.84157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.87 13.96 21.45 0.30 -59.57 16 2 C 0.04 2.38 5.47 84.66 0.46 2.84 16 3 Si 0.92 47.06 27.06 68.60 1.86 48.92 16 4 H -0.29 -14.82 7.11 99.48 0.71 -14.12 16 5 H -0.30 -15.37 7.11 99.48 0.71 -14.66 16 6 H -0.19 -9.30 5.42 99.48 0.54 -8.76 16 7 C -0.51 -29.77 9.37 25.60 0.24 -29.53 16 8 H 0.04 2.69 7.88 -2.91 -0.02 2.67 16 9 C 0.12 5.68 2.95 44.66 0.13 5.81 16 10 H 0.05 2.30 7.59 -2.39 -0.02 2.28 16 11 C 0.04 1.62 7.72 72.61 0.56 2.19 16 12 O -0.36 -13.54 11.17 -78.67 -0.88 -14.41 16 13 C 0.26 9.81 7.47 88.57 0.66 10.47 16 14 C 0.00 -0.05 5.44 29.10 0.16 0.10 16 15 C -0.07 -2.04 4.47 -19.85 -0.09 -2.13 16 16 C -0.10 -2.68 9.67 22.26 0.22 -2.46 16 17 C -0.12 -2.86 10.05 22.27 0.22 -2.64 16 18 C -0.11 -2.65 10.05 22.27 0.22 -2.43 16 19 C -0.13 -3.48 9.83 22.29 0.22 -3.26 16 20 C -0.03 -0.84 6.25 22.32 0.14 -0.70 16 21 Cl -0.08 -2.43 27.34 -2.72 -0.07 -2.51 16 22 N -0.52 -23.29 7.60 -432.70 -3.29 -26.58 16 23 H 0.27 15.97 8.31 -92.71 -0.77 15.19 16 24 H 0.07 2.92 7.79 -2.39 -0.02 2.90 16 25 H 0.12 4.03 8.14 -2.39 -0.02 4.01 16 26 H 0.13 2.76 8.00 -2.39 -0.02 2.74 16 27 H 0.11 2.80 7.34 -2.39 -0.02 2.78 16 28 H 0.15 3.21 8.04 -2.91 -0.02 3.18 16 29 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 30 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 31 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -71.15 282.77 2.03 -69.12 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 0.97 Total: 6.78 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: 3.15 Total: -21.74 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -2.99 Total: -86.16 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.88 Total: -14.41 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.86 Total: 48.92 kcal Atomic # 17 Polarization: -2.43 SS G_CDS: -0.07 Total: -2.51 kcal Total: -71.15 2.03 -69.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260413866.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.786 kcal (2) G-P(sol) polarization free energy of solvation -71.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds