Wall clock time and date at job start Mon Mar 30 2020 06:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 H 1.08997 * 110.83070 * 300.42188 * 9 7 2 11 11 C 1.54842 * 110.94309 * 176.69402 * 9 7 2 12 12 O 1.44277 * 101.19778 * 218.60217 * 11 9 7 13 13 C 1.34599 * 107.66074 * 24.64551 * 12 11 9 14 14 C 1.50699 * 122.93339 * 162.79449 * 13 12 11 15 15 C 1.50712 * 109.46980 * 179.97438 * 14 13 12 16 16 C 1.38266 * 119.99116 * 269.72212 * 15 14 13 17 17 C 1.38216 * 120.02378 * 179.76349 * 16 15 14 18 18 C 1.38235 * 120.01250 * 0.51073 * 17 16 15 19 19 C 1.38334 * 119.98670 * 359.74819 * 18 17 16 20 20 Cl 1.73599 * 120.01069 * 179.97438 * 19 18 17 21 21 C 1.38188 * 119.99175 * 89.99703 * 15 14 13 22 22 N 1.28703 * 114.13516 * 342.77036 * 13 12 11 23 23 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 24 24 H 1.09005 * 111.08128 * 336.58775 * 11 9 7 25 25 H 1.09007 * 111.07654 * 100.58238 * 11 9 7 26 26 H 1.09000 * 109.47390 * 299.96731 * 14 13 12 27 27 H 1.08997 * 109.47602 * 59.97630 * 14 13 12 28 28 H 1.08003 * 119.98644 * 0.02562 * 16 15 14 29 29 H 1.07997 * 119.99353 * 180.23493 * 17 16 15 30 30 H 1.08007 * 120.00532 * 179.75922 * 18 17 16 31 31 H 1.07996 * 120.01033 * 0.02562 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 1 3.9028 -0.6758 -0.8696 11 6 4.0647 -2.6381 0.0873 12 8 5.1942 -2.4562 0.9664 13 6 4.9566 -1.3636 1.7158 14 6 5.7059 -1.0644 2.9886 15 6 5.1996 0.2272 3.5778 16 6 5.7919 1.4261 3.2264 17 6 5.3249 2.6114 3.7625 18 6 4.2723 2.5978 4.6585 19 6 3.6829 1.3980 5.0144 20 17 2.3613 1.3801 6.1400 21 6 4.1473 0.2122 4.4733 22 7 4.0339 -0.5966 1.2502 23 1 -0.4849 0.8400 0.0004 24 1 3.3313 -3.3147 0.5262 25 1 4.3834 -2.9918 -0.8933 26 1 5.5499 -1.8744 3.7011 27 1 6.7698 -0.9718 2.7708 28 1 6.6169 1.4368 2.5295 29 1 5.7855 3.5480 3.4849 30 1 3.9101 3.5237 5.0803 31 1 3.6879 -0.7248 4.7514 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260416017.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:42 Heat of formation + Delta-G solvation = 9.829494 kcal Electronic energy + Delta-G solvation = -17592.803108 eV Core-core repulsion = 14672.880121 eV Total energy + Delta-G solvation = -2919.922987 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.28379 -39.08978 -36.32462 -33.61782 -33.40039 -31.65544 -30.57159 -29.56001 -26.84143 -25.06621 -22.53677 -21.82496 -20.82291 -19.45868 -16.93016 -16.74735 -16.14226 -15.54289 -15.41214 -15.08268 -14.44668 -13.87076 -13.65984 -13.24111 -13.09349 -12.66863 -12.60722 -12.13829 -12.09795 -11.42362 -11.28496 -11.19027 -10.82603 -10.72852 -10.66389 -10.25887 -9.98302 -9.75167 -8.98092 -8.70744 -8.47909 -8.38421 -8.05814 -6.10593 -4.19634 1.34037 1.44740 2.30654 3.01975 3.40444 3.50117 3.66410 3.78965 4.16966 4.58506 4.69955 4.92564 5.05191 5.18794 5.35175 5.38991 5.45634 5.59670 5.69693 5.79325 5.88327 5.92563 6.03504 6.23760 6.37305 6.44689 6.49150 6.65725 6.87270 6.96388 7.24046 7.61351 8.36339 8.63869 8.87171 9.52491 10.99346 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.015624 B = 0.008611 C = 0.006951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.654003 B = 3250.852786 C = 4027.304844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.091 3.909 3 Si 0.863 3.137 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.210 1.210 7 C -0.518 4.518 8 H 0.076 0.924 9 C 0.122 3.878 10 H 0.054 0.946 11 C 0.035 3.965 12 O -0.366 6.366 13 C 0.239 3.761 14 C 0.001 3.999 15 C -0.045 4.045 16 C -0.097 4.097 17 C -0.110 4.110 18 C -0.115 4.115 19 C -0.031 4.031 20 Cl -0.078 7.078 21 C -0.087 4.087 22 N -0.486 5.486 23 H 0.265 0.735 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.125 0.875 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.612 2.419 9.551 16.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.114 4.114 3 Si 0.690 3.310 4 H -0.218 1.218 5 H -0.220 1.220 6 H -0.132 1.132 7 C -0.556 4.556 8 H 0.094 0.906 9 C 0.015 3.985 10 H 0.072 0.928 11 C -0.041 4.041 12 O -0.272 6.272 13 C 0.011 3.989 14 C -0.037 4.037 15 C -0.046 4.046 16 C -0.115 4.115 17 C -0.128 4.128 18 C -0.134 4.134 19 C -0.057 4.057 20 Cl -0.049 7.049 21 C -0.106 4.106 22 N -0.220 5.220 23 H 0.075 0.925 24 H 0.094 0.906 25 H 0.109 0.891 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.143 0.857 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 12.021 3.144 9.742 15.788 hybrid contribution -0.046 0.201 -0.517 0.557 sum 11.975 3.345 9.225 15.481 Atomic orbital electron populations 1.69911 1.06718 1.27489 1.48807 1.24914 0.94558 0.99722 0.92249 0.87048 0.84003 0.82111 0.77879 1.21760 1.21963 1.13169 1.20620 0.86407 0.94897 1.53695 0.90589 1.21598 0.98359 0.88425 0.90113 0.92821 1.24530 0.85894 1.00858 0.92864 1.86780 1.43591 1.46239 1.50582 1.25136 0.94705 0.85782 0.93310 1.18999 0.98772 0.95294 0.90592 1.19244 0.95421 0.94437 0.95480 1.21028 1.00119 0.91811 0.98531 1.20984 0.96627 0.98287 0.96916 1.20972 0.96875 0.96538 0.99018 1.20809 0.92761 0.95271 0.96892 1.98355 1.47171 1.98948 1.60439 1.20844 0.95786 0.97232 0.96692 1.75251 1.08401 1.26971 1.11357 0.92526 0.90554 0.89064 0.88497 0.88494 0.85726 0.85419 0.85398 0.85100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.85 13.96 55.43 0.77 -27.08 16 2 C 0.09 2.68 5.47 -17.82 -0.10 2.59 16 3 Si 0.86 22.39 27.06 -169.99 -4.60 17.79 16 4 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 5 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 6 H -0.21 -5.22 5.42 56.52 0.31 -4.92 16 7 C -0.52 -14.75 9.37 -34.44 -0.32 -15.07 16 8 H 0.08 2.30 7.88 -52.49 -0.41 1.89 16 9 C 0.12 2.94 2.95 -67.51 -0.20 2.74 16 10 H 0.05 1.30 7.59 -51.93 -0.39 0.91 16 11 C 0.03 0.71 7.72 38.13 0.29 1.00 16 12 O -0.37 -7.10 11.17 -15.57 -0.17 -7.28 16 13 C 0.24 4.58 7.68 -13.59 -0.10 4.48 16 14 C 0.00 0.02 5.97 -29.03 -0.17 -0.15 16 15 C -0.05 -0.68 4.44 -104.62 -0.46 -1.15 16 16 C -0.10 -1.35 9.70 -39.58 -0.38 -1.74 16 17 C -0.11 -1.46 10.05 -39.59 -0.40 -1.86 16 18 C -0.12 -1.63 9.83 -39.55 -0.39 -2.01 16 19 C -0.03 -0.48 6.32 -39.50 -0.25 -0.73 16 20 Cl -0.08 -1.16 28.96 -51.86 -1.50 -2.66 16 21 C -0.09 -1.37 9.49 -39.55 -0.38 -1.75 16 22 N -0.49 -11.09 7.64 -51.71 -0.40 -11.49 16 23 H 0.27 7.82 8.31 -40.82 -0.34 7.48 16 24 H 0.08 1.57 7.79 -51.93 -0.40 1.17 16 25 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 26 H 0.10 1.16 8.09 -51.93 -0.42 0.74 16 27 H 0.10 1.08 8.08 -51.93 -0.42 0.67 16 28 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 29 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 30 H 0.13 1.54 8.06 -52.48 -0.42 1.11 16 31 H 0.13 1.99 8.06 -52.49 -0.42 1.56 16 LS Contribution 285.53 15.07 4.30 4.30 Total: -1.00 -32.84 285.53 -7.85 -40.69 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -3.40 Total: -0.62 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -2.86 Total: -13.66 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.38 Total: -38.57 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -0.17 Total: -7.28 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.60 Total: 17.79 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -1.50 Total: -2.66 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.84 -7.85 -40.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260416017.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.519 kcal (2) G-P(sol) polarization free energy of solvation -32.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds