Wall clock time and date at job start Mon Mar 30 2020 06:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 H 1.08997 * 110.83070 * 300.42188 * 9 7 2 11 11 C 1.54842 * 110.94309 * 176.69402 * 9 7 2 12 12 O 1.44277 * 101.19778 * 218.60217 * 11 9 7 13 13 C 1.34599 * 107.66074 * 24.64551 * 12 11 9 14 14 C 1.50699 * 122.93339 * 162.79449 * 13 12 11 15 15 C 1.50712 * 109.46980 * 179.97438 * 14 13 12 16 16 C 1.38266 * 119.99116 * 269.72212 * 15 14 13 17 17 C 1.38216 * 120.02378 * 179.76349 * 16 15 14 18 18 C 1.38235 * 120.01250 * 0.51073 * 17 16 15 19 19 C 1.38334 * 119.98670 * 359.74819 * 18 17 16 20 20 Cl 1.73599 * 120.01069 * 179.97438 * 19 18 17 21 21 C 1.38188 * 119.99175 * 89.99703 * 15 14 13 22 22 N 1.28703 * 114.13516 * 342.77036 * 13 12 11 23 23 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 24 24 H 1.09005 * 111.08128 * 336.58775 * 11 9 7 25 25 H 1.09007 * 111.07654 * 100.58238 * 11 9 7 26 26 H 1.09000 * 109.47390 * 299.96731 * 14 13 12 27 27 H 1.08997 * 109.47602 * 59.97630 * 14 13 12 28 28 H 1.08003 * 119.98644 * 0.02562 * 16 15 14 29 29 H 1.07997 * 119.99353 * 180.23493 * 17 16 15 30 30 H 1.08007 * 120.00532 * 179.75922 * 18 17 16 31 31 H 1.07996 * 120.01033 * 0.02562 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 1 3.9028 -0.6758 -0.8696 11 6 4.0647 -2.6381 0.0873 12 8 5.1942 -2.4562 0.9664 13 6 4.9566 -1.3636 1.7158 14 6 5.7059 -1.0644 2.9886 15 6 5.1996 0.2272 3.5778 16 6 5.7919 1.4261 3.2264 17 6 5.3249 2.6114 3.7625 18 6 4.2723 2.5978 4.6585 19 6 3.6829 1.3980 5.0144 20 17 2.3613 1.3801 6.1400 21 6 4.1473 0.2122 4.4733 22 7 4.0339 -0.5966 1.2502 23 1 -0.4849 0.8400 0.0004 24 1 3.3313 -3.3147 0.5262 25 1 4.3834 -2.9918 -0.8933 26 1 5.5499 -1.8744 3.7011 27 1 6.7698 -0.9718 2.7708 28 1 6.6169 1.4368 2.5295 29 1 5.7855 3.5480 3.4849 30 1 3.9101 3.5237 5.0803 31 1 3.6879 -0.7248 4.7514 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260416017.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:42 Heat of formation + Delta-G solvation = -12.349953 kcal Electronic energy + Delta-G solvation = -17593.764881 eV Core-core repulsion = 14672.880121 eV Total energy + Delta-G solvation = -2920.884760 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.86239 -40.19269 -37.45551 -35.42352 -34.82265 -33.52912 -31.64634 -31.07934 -28.23955 -26.93942 -23.60045 -23.00516 -22.70210 -20.90281 -19.01026 -17.91298 -17.66489 -17.08412 -16.55590 -16.36344 -16.09143 -15.66458 -14.80584 -14.69265 -14.46374 -14.23108 -13.94423 -13.84612 -13.59676 -12.74627 -12.60967 -12.39493 -12.32245 -12.21259 -12.11687 -12.00415 -11.77934 -11.75571 -11.01575 -10.34232 -9.83095 -9.73444 -9.56985 -8.36589 -6.47930 0.25324 0.36703 1.18775 1.33806 1.40125 1.48873 1.74344 2.40376 2.45099 2.88087 3.00676 3.51116 3.84159 3.93112 4.06343 4.15438 4.23920 4.37215 4.39000 4.56366 4.64012 4.65384 4.82452 4.88178 4.98926 5.09346 5.30565 5.41707 5.46800 5.58581 5.74149 5.94333 6.11445 6.55152 7.09048 7.28675 8.76785 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.015624 B = 0.008611 C = 0.006951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.654003 B = 3250.852786 C = 4027.304844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.034 3.966 3 Si 0.925 3.075 4 H -0.286 1.286 5 H -0.304 1.304 6 H -0.189 1.189 7 C -0.518 4.518 8 H 0.040 0.960 9 C 0.117 3.883 10 H 0.054 0.946 11 C 0.041 3.959 12 O -0.358 6.358 13 C 0.259 3.741 14 C 0.003 3.997 15 C -0.058 4.058 16 C -0.102 4.102 17 C -0.111 4.111 18 C -0.123 4.123 19 C -0.051 4.051 20 Cl -0.084 7.084 21 C -0.107 4.107 22 N -0.529 5.529 23 H 0.265 0.735 24 H 0.067 0.933 25 H 0.122 0.878 26 H 0.120 0.880 27 H 0.136 0.864 28 H 0.148 0.852 29 H 0.159 0.841 30 H 0.144 0.856 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.697 3.102 9.821 18.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.165 4.165 3 Si 0.750 3.250 4 H -0.212 1.212 5 H -0.231 1.231 6 H -0.110 1.110 7 C -0.556 4.556 8 H 0.058 0.942 9 C 0.009 3.991 10 H 0.071 0.929 11 C -0.036 4.036 12 O -0.263 6.263 13 C 0.032 3.968 14 C -0.034 4.034 15 C -0.059 4.059 16 C -0.119 4.119 17 C -0.129 4.129 18 C -0.142 4.142 19 C -0.078 4.078 20 Cl -0.055 7.055 21 C -0.125 4.125 22 N -0.264 5.264 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.140 0.860 26 H 0.138 0.862 27 H 0.154 0.846 28 H 0.166 0.834 29 H 0.176 0.824 30 H 0.162 0.838 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 15.135 3.802 10.016 18.543 hybrid contribution -0.965 -0.120 -0.558 1.121 sum 14.170 3.682 9.458 17.430 Atomic orbital electron populations 1.70045 1.08442 1.28185 1.51449 1.25753 0.95158 1.03306 0.92316 0.86115 0.83326 0.77601 0.77992 1.21247 1.23084 1.11050 1.20881 0.89287 0.93278 1.52151 0.94204 1.21421 0.95445 0.91053 0.91178 0.92880 1.24467 0.86036 0.98544 0.94524 1.86807 1.42845 1.46275 1.50338 1.26041 0.93096 0.84099 0.93591 1.19300 1.00094 0.95693 0.88333 1.19410 0.95476 0.95411 0.95555 1.21400 1.00503 0.91538 0.98507 1.21402 0.95976 0.99551 0.95921 1.21295 0.97045 0.96670 0.99141 1.21048 0.93203 0.96027 0.97507 1.98346 1.47508 1.98979 1.60660 1.20978 0.96615 0.97249 0.97692 1.75118 1.11207 1.28742 1.11305 0.92639 0.91447 0.86016 0.86180 0.84581 0.83405 0.82375 0.83788 0.85646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.61 13.96 21.45 0.30 -60.31 16 2 C 0.03 2.07 5.47 84.66 0.46 2.53 16 3 Si 0.93 46.59 27.06 68.60 1.86 48.45 16 4 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 5 H -0.30 -15.64 7.11 99.48 0.71 -14.93 16 6 H -0.19 -8.88 5.42 99.48 0.54 -8.34 16 7 C -0.52 -29.97 9.37 25.60 0.24 -29.73 16 8 H 0.04 2.51 7.88 -2.91 -0.02 2.49 16 9 C 0.12 5.48 2.95 44.66 0.13 5.61 16 10 H 0.05 2.48 7.59 -2.39 -0.02 2.47 16 11 C 0.04 1.58 7.72 72.61 0.56 2.14 16 12 O -0.36 -12.66 11.17 -78.64 -0.88 -13.53 16 13 C 0.26 9.10 7.68 88.57 0.68 9.78 16 14 C 0.00 0.08 5.97 29.11 0.17 0.25 16 15 C -0.06 -1.57 4.44 -19.87 -0.09 -1.66 16 16 C -0.10 -2.45 9.70 22.27 0.22 -2.24 16 17 C -0.11 -2.55 10.05 22.26 0.22 -2.33 16 18 C -0.12 -3.19 9.83 22.29 0.22 -2.97 16 19 C -0.05 -1.54 6.32 22.32 0.14 -1.40 16 20 Cl -0.08 -2.46 28.96 -2.72 -0.08 -2.54 16 21 C -0.11 -3.22 9.49 22.29 0.21 -3.01 16 22 N -0.53 -23.01 7.64 -432.72 -3.31 -26.31 16 23 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 24 H 0.07 2.72 7.79 -2.38 -0.02 2.70 16 25 H 0.12 3.94 8.14 -2.38 -0.02 3.92 16 26 H 0.12 2.39 8.09 -2.39 -0.02 2.37 16 27 H 0.14 2.27 8.08 -2.39 -0.02 2.26 16 28 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 29 H 0.16 2.60 8.06 -2.91 -0.02 2.57 16 30 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 31 H 0.13 3.76 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -72.06 285.53 2.04 -70.03 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: 0.97 Total: 7.24 kcal Atomic # 6 Polarization: -26.20 SS G_CDS: 3.17 Total: -23.02 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -3.01 Total: -86.62 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.88 Total: -13.53 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 1.86 Total: 48.45 kcal Atomic # 17 Polarization: -2.46 SS G_CDS: -0.08 Total: -2.54 kcal Total: -72.06 2.04 -70.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260416017.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.679 kcal (2) G-P(sol) polarization free energy of solvation -72.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds