Wall clock time and date at job start Mon Mar 30 2020 06:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09001 * 110.83696 * 59.30270 * 9 7 2 11 11 C 1.54851 * 110.94330 * 183.02352 * 9 7 2 12 12 O 1.44279 * 101.19562 * 141.39281 * 11 9 7 13 13 C 1.34600 * 107.66504 * 335.36186 * 12 11 9 14 14 C 1.50701 * 122.93333 * 197.20564 * 13 12 11 15 15 C 1.50708 * 109.46845 * 179.97438 * 14 13 12 16 16 C 1.38264 * 119.98801 * 269.72205 * 15 14 13 17 17 C 1.38221 * 120.01980 * 179.76586 * 16 15 14 18 18 C 1.38234 * 120.01755 * 0.50696 * 17 16 15 19 19 C 1.38330 * 119.98363 * 359.75004 * 18 17 16 20 20 Cl 1.73597 * 120.01419 * 180.02562 * 19 18 17 21 21 C 1.38188 * 119.99242 * 89.99633 * 15 14 13 22 22 N 1.28702 * 114.13330 * 17.22686 * 13 12 11 23 23 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 24 24 H 1.08999 * 111.08064 * 259.37180 * 11 9 7 25 25 H 1.08997 * 111.07576 * 23.37175 * 11 9 7 26 26 H 1.08994 * 109.47139 * 299.97099 * 14 13 12 27 27 H 1.08993 * 109.47310 * 59.97472 * 14 13 12 28 28 H 1.07995 * 119.98992 * 0.02562 * 16 15 14 29 29 H 1.08005 * 119.99119 * 180.26064 * 17 16 15 30 30 H 1.07996 * 120.00989 * 179.71981 * 18 17 16 31 31 H 1.07997 * 120.01017 * 0.02562 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 1 0.6071 -2.5789 -0.8644 11 6 2.2249 -3.7002 0.0937 12 8 1.5021 -4.5874 0.9724 13 6 0.6741 -3.8354 1.7212 14 6 0.0394 -4.3346 2.9936 15 6 -0.8254 -3.2500 3.5827 16 6 -0.2871 -2.3499 4.4836 17 6 -1.0784 -1.3520 5.0206 18 6 -2.4111 -1.2597 4.6652 19 6 -2.9515 -2.1632 3.7679 20 17 -4.6248 -2.0476 3.3205 21 6 -2.1575 -3.1589 3.2265 22 7 0.4715 -2.6528 1.2553 23 1 -0.4850 0.8401 -0.0041 24 1 2.3720 -4.1536 -0.8866 25 1 3.1774 -3.4032 0.5325 26 1 -0.5732 -5.2092 2.7751 27 1 0.8184 -4.6054 3.7062 28 1 0.7530 -2.4241 4.7647 29 1 -0.6564 -0.6465 5.7212 30 1 -3.0304 -0.4827 5.0883 31 1 -2.5790 -3.8650 2.5265 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260416022.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:44 Heat of formation + Delta-G solvation = 3.936038 kcal Electronic energy + Delta-G solvation = -17429.038465 eV Core-core repulsion = 14508.859918 eV Total energy + Delta-G solvation = -2920.178546 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.99617 -38.90147 -36.21375 -33.40145 -33.32877 -31.30925 -30.39882 -29.26692 -26.63173 -24.85234 -22.36737 -21.62663 -21.03798 -19.12057 -16.68024 -16.59928 -15.90189 -15.30295 -15.18152 -14.81151 -14.43601 -14.06615 -13.49891 -13.06497 -12.92040 -12.54359 -12.24005 -11.86412 -11.82869 -11.24064 -11.14372 -11.06339 -10.88337 -10.66119 -10.57310 -10.54113 -9.97455 -9.52515 -8.82661 -8.52957 -8.48880 -8.29657 -7.78002 -6.01425 -4.14854 1.52536 1.62713 2.42109 3.26843 3.33610 3.35419 3.39163 3.85864 4.35677 4.43420 4.90024 5.09668 5.20656 5.33660 5.53628 5.56378 5.60664 5.75418 5.87091 6.04250 6.07307 6.11208 6.20125 6.37779 6.52627 6.63589 6.84401 6.86408 7.12172 7.26417 7.57305 7.82697 8.17502 8.75070 9.12955 9.53226 11.05365 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.015813 B = 0.007248 C = 0.005878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.313108 B = 3862.075680 C = 4762.515463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.083 3.917 3 Si 0.890 3.110 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.531 4.531 8 H 0.061 0.939 9 C 0.158 3.842 10 H 0.058 0.942 11 C 0.023 3.977 12 O -0.372 6.372 13 C 0.210 3.790 14 C 0.005 3.995 15 C -0.040 4.040 16 C -0.092 4.092 17 C -0.107 4.107 18 C -0.114 4.114 19 C -0.029 4.029 20 Cl -0.084 7.084 21 C -0.087 4.087 22 N -0.442 5.442 23 H 0.260 0.740 24 H 0.086 0.914 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.732 -6.106 9.285 11.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.125 4.125 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.570 4.570 8 H 0.079 0.921 9 C 0.051 3.949 10 H 0.075 0.925 11 C -0.054 4.054 12 O -0.278 6.278 13 C -0.020 4.020 14 C -0.033 4.033 15 C -0.041 4.041 16 C -0.111 4.111 17 C -0.125 4.125 18 C -0.133 4.133 19 C -0.055 4.055 20 Cl -0.055 7.055 21 C -0.106 4.106 22 N -0.173 5.173 23 H 0.070 0.930 24 H 0.104 0.896 25 H 0.086 0.914 26 H 0.110 0.890 27 H 0.111 0.889 28 H 0.142 0.858 29 H 0.144 0.856 30 H 0.144 0.856 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.461 -5.383 9.322 11.652 hybrid contribution 0.891 0.681 -0.650 1.296 sum -3.570 -4.702 8.673 10.491 Atomic orbital electron populations 1.70046 1.05821 1.26412 1.46146 1.24968 0.94732 0.98936 0.93821 0.86649 0.79932 0.83580 0.78112 1.20551 1.21051 1.19885 1.20695 0.92136 0.89166 1.54988 0.92134 1.21212 0.89915 0.93218 0.90547 0.92486 1.24675 0.96686 0.91436 0.92563 1.86753 1.53567 1.36572 1.50917 1.25154 0.93808 0.88881 0.94148 1.18918 0.97550 0.96086 0.90720 1.19212 0.92715 0.96570 0.95574 1.21007 0.99468 0.94187 0.96395 1.20949 0.93036 0.98149 1.00364 1.20902 0.95862 0.98476 0.98073 1.20738 0.85327 0.99028 1.00420 1.98338 1.17066 1.97907 1.92221 1.20755 0.93187 0.97906 0.98727 1.75157 1.19578 1.12383 1.10211 0.92992 0.89624 0.91396 0.89024 0.88943 0.85848 0.85591 0.85639 0.85481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.14 13.02 55.43 0.72 -24.42 16 2 C 0.08 2.33 5.43 -17.82 -0.10 2.24 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.53 -14.76 8.79 -34.44 -0.30 -15.06 16 8 H 0.06 1.63 7.63 -52.49 -0.40 1.23 16 9 C 0.16 4.10 3.55 -67.51 -0.24 3.86 16 10 H 0.06 1.61 8.14 -51.93 -0.42 1.18 16 11 C 0.02 0.50 7.72 38.13 0.29 0.80 16 12 O -0.37 -7.87 11.17 -15.58 -0.17 -8.04 16 13 C 0.21 4.42 7.68 -13.59 -0.10 4.31 16 14 C 0.01 0.08 5.97 -29.03 -0.17 -0.09 16 15 C -0.04 -0.67 4.44 -104.63 -0.46 -1.13 16 16 C -0.09 -1.47 9.70 -39.58 -0.38 -1.85 16 17 C -0.11 -1.59 10.04 -39.59 -0.40 -1.99 16 18 C -0.11 -1.74 9.83 -39.55 -0.39 -2.13 16 19 C -0.03 -0.47 6.32 -39.50 -0.25 -0.72 16 20 Cl -0.08 -1.26 28.96 -51.86 -1.50 -2.76 16 21 C -0.09 -1.45 9.49 -39.55 -0.38 -1.83 16 22 N -0.44 -11.09 10.11 -51.71 -0.52 -11.62 16 23 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 24 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 25 H 0.07 1.43 7.79 -51.93 -0.40 1.03 16 26 H 0.09 1.22 8.08 -51.93 -0.42 0.80 16 27 H 0.09 1.22 8.08 -51.93 -0.42 0.80 16 28 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.13 1.54 8.06 -52.48 -0.42 1.11 16 30 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 291.51 15.07 4.39 4.39 Total: -1.00 -31.55 291.51 -8.30 -39.85 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -3.32 Total: -0.19 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -2.88 Total: -13.58 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.20 Total: -36.03 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -0.17 Total: -8.04 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -1.50 Total: -2.76 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.55 -8.30 -39.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260416022.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.791 kcal (2) G-P(sol) polarization free energy of solvation -31.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds