Wall clock time and date at job start Mon Mar 30 2020 06:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09001 * 110.83696 * 59.30270 * 9 7 2 11 11 C 1.54851 * 110.94330 * 183.02352 * 9 7 2 12 12 O 1.44279 * 101.19562 * 141.39281 * 11 9 7 13 13 C 1.34600 * 107.66504 * 335.36186 * 12 11 9 14 14 C 1.50701 * 122.93333 * 197.20564 * 13 12 11 15 15 C 1.50708 * 109.46845 * 179.97438 * 14 13 12 16 16 C 1.38264 * 119.98801 * 269.72205 * 15 14 13 17 17 C 1.38221 * 120.01980 * 179.76586 * 16 15 14 18 18 C 1.38234 * 120.01755 * 0.50696 * 17 16 15 19 19 C 1.38330 * 119.98363 * 359.75004 * 18 17 16 20 20 Cl 1.73597 * 120.01419 * 180.02562 * 19 18 17 21 21 C 1.38188 * 119.99242 * 89.99633 * 15 14 13 22 22 N 1.28702 * 114.13330 * 17.22686 * 13 12 11 23 23 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 24 24 H 1.08999 * 111.08064 * 259.37180 * 11 9 7 25 25 H 1.08997 * 111.07576 * 23.37175 * 11 9 7 26 26 H 1.08994 * 109.47139 * 299.97099 * 14 13 12 27 27 H 1.08993 * 109.47310 * 59.97472 * 14 13 12 28 28 H 1.07995 * 119.98992 * 0.02562 * 16 15 14 29 29 H 1.08005 * 119.99119 * 180.26064 * 17 16 15 30 30 H 1.07996 * 120.00989 * 179.71981 * 18 17 16 31 31 H 1.07997 * 120.01017 * 0.02562 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 1 0.6071 -2.5789 -0.8644 11 6 2.2249 -3.7002 0.0937 12 8 1.5021 -4.5874 0.9724 13 6 0.6741 -3.8354 1.7212 14 6 0.0394 -4.3346 2.9936 15 6 -0.8254 -3.2500 3.5827 16 6 -0.2871 -2.3499 4.4836 17 6 -1.0784 -1.3520 5.0206 18 6 -2.4111 -1.2597 4.6652 19 6 -2.9515 -2.1632 3.7679 20 17 -4.6248 -2.0476 3.3205 21 6 -2.1575 -3.1589 3.2265 22 7 0.4715 -2.6528 1.2553 23 1 -0.4850 0.8401 -0.0041 24 1 2.3720 -4.1536 -0.8866 25 1 3.1774 -3.4032 0.5325 26 1 -0.5732 -5.2092 2.7751 27 1 0.8184 -4.6054 3.7062 28 1 0.7530 -2.4241 4.7647 29 1 -0.6564 -0.6465 5.7212 30 1 -3.0304 -0.4827 5.0883 31 1 -2.5790 -3.8650 2.5265 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260416022.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:43 Heat of formation + Delta-G solvation = -17.078234 kcal Electronic energy + Delta-G solvation = -17429.949712 eV Core-core repulsion = 14508.859918 eV Total energy + Delta-G solvation = -2921.089793 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.69355 -40.13609 -37.41556 -35.34796 -34.74267 -33.15723 -31.59774 -30.89194 -28.13781 -26.76918 -23.56402 -22.97178 -22.91088 -20.68637 -18.71102 -17.83525 -17.56246 -16.84465 -16.45268 -16.41493 -16.19216 -15.71081 -14.67575 -14.42469 -14.31058 -14.09387 -13.77765 -13.74066 -13.49457 -12.77994 -12.51628 -12.48597 -12.39071 -12.26696 -12.08772 -11.99605 -11.72182 -11.47054 -10.70546 -10.49079 -9.74042 -9.63712 -9.49873 -8.12214 -6.32120 0.30774 0.41797 1.21290 1.38456 1.39790 1.49614 1.68301 2.38603 2.49822 2.95898 3.14116 3.62464 3.92544 3.98711 4.18096 4.23298 4.31400 4.40840 4.42668 4.58428 4.66238 4.72642 4.91631 5.01210 5.05909 5.31667 5.33616 5.45402 5.63463 5.66378 5.79503 5.98014 6.15861 6.67767 7.33622 7.42114 8.94546 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.015813 B = 0.007248 C = 0.005878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.313108 B = 3862.075680 C = 4762.515463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.032 3.968 3 Si 0.956 3.044 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.147 3.853 10 H 0.018 0.982 11 C 0.032 3.968 12 O -0.368 6.368 13 C 0.227 3.773 14 C 0.007 3.993 15 C -0.054 4.054 16 C -0.105 4.105 17 C -0.111 4.111 18 C -0.121 4.121 19 C -0.045 4.045 20 Cl -0.080 7.080 21 C -0.104 4.104 22 N -0.493 5.493 23 H 0.258 0.742 24 H 0.110 0.890 25 H 0.075 0.925 26 H 0.120 0.880 27 H 0.126 0.874 28 H 0.137 0.863 29 H 0.153 0.847 30 H 0.145 0.855 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.708 -6.311 10.485 12.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.172 4.172 3 Si 0.781 3.219 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.040 3.960 10 H 0.036 0.964 11 C -0.045 4.045 12 O -0.274 6.274 13 C -0.001 4.001 14 C -0.031 4.031 15 C -0.054 4.054 16 C -0.123 4.123 17 C -0.129 4.129 18 C -0.140 4.140 19 C -0.072 4.072 20 Cl -0.051 7.051 21 C -0.123 4.123 22 N -0.225 5.225 23 H 0.066 0.934 24 H 0.128 0.872 25 H 0.094 0.906 26 H 0.138 0.862 27 H 0.144 0.856 28 H 0.155 0.845 29 H 0.171 0.829 30 H 0.162 0.838 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.423 -5.607 10.521 12.403 hybrid contribution 0.547 0.657 -1.011 1.324 sum -2.876 -4.950 9.510 11.100 Atomic orbital electron populations 1.70204 1.07423 1.26913 1.47675 1.25771 0.95475 1.02421 0.93493 0.85610 0.78711 0.79173 0.78411 1.19699 1.21129 1.19008 1.21055 0.92454 0.90429 1.54408 0.91889 1.21077 0.90379 0.94462 0.90122 0.96399 1.24609 0.95813 0.90034 0.94024 1.86763 1.53427 1.36388 1.50796 1.26098 0.91711 0.87808 0.94531 1.19207 0.98564 0.96567 0.88723 1.19366 0.92734 0.97262 0.96057 1.21314 1.00324 0.94256 0.96381 1.21327 0.92870 0.98252 1.00417 1.21224 0.96455 0.98587 0.97698 1.20960 0.85770 0.99455 1.00970 1.98332 1.16616 1.97901 1.92240 1.20920 0.93758 0.98432 0.99143 1.75101 1.21843 1.14846 1.10661 0.93354 0.87216 0.90637 0.86237 0.85611 0.84502 0.82941 0.83766 0.85413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.48 13.02 21.45 0.28 -53.20 16 2 C 0.03 1.82 5.43 84.66 0.46 2.27 16 3 Si 0.96 43.96 29.54 68.60 2.03 45.98 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.55 -30.44 8.79 25.60 0.22 -30.22 16 8 H 0.06 3.37 7.63 -2.91 -0.02 3.35 16 9 C 0.15 7.73 3.55 44.67 0.16 7.89 16 10 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 11 C 0.03 1.34 7.72 72.61 0.56 1.90 16 12 O -0.37 -14.87 11.17 -78.65 -0.88 -15.75 16 13 C 0.23 9.27 7.68 88.57 0.68 9.95 16 14 C 0.01 0.20 5.97 29.10 0.17 0.37 16 15 C -0.05 -1.70 4.44 -19.87 -0.09 -1.79 16 16 C -0.10 -3.15 9.70 22.27 0.22 -2.93 16 17 C -0.11 -3.10 10.04 22.26 0.22 -2.88 16 18 C -0.12 -3.53 9.83 22.29 0.22 -3.31 16 19 C -0.05 -1.44 6.32 22.33 0.14 -1.30 16 20 Cl -0.08 -2.36 28.96 -2.72 -0.08 -2.43 16 21 C -0.10 -3.42 9.49 22.29 0.21 -3.20 16 22 N -0.49 -24.75 10.11 -432.71 -4.38 -29.13 16 23 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 24 H 0.11 4.01 8.14 -2.39 -0.02 4.00 16 25 H 0.08 3.06 7.79 -2.39 -0.02 3.04 16 26 H 0.12 2.82 8.08 -2.39 -0.02 2.80 16 27 H 0.13 2.84 8.08 -2.39 -0.02 2.83 16 28 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 29 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 30 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 31 H 0.13 4.02 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -68.18 291.51 1.29 -66.89 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 1.14 Total: 10.88 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: 3.18 Total: -23.24 kcal Atomic # 7 Polarization: -78.23 SS G_CDS: -4.10 Total: -82.33 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.88 Total: -15.75 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 17 Polarization: -2.36 SS G_CDS: -0.08 Total: -2.43 kcal Total: -68.18 1.29 -66.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260416022.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.808 kcal (2) G-P(sol) polarization free energy of solvation -68.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds