Wall clock time and date at job start Mon Mar 30 2020 06:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30606 * 1 3 3 Si 1.86797 * 119.99713 * 2 1 4 4 H 1.48500 * 109.47121 * 240.00053 * 3 2 1 5 5 H 1.48500 * 109.47111 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47479 * 120.00034 * 3 2 1 7 7 C 1.40217 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99558 * 179.97438 * 7 2 1 9 9 C 1.41254 * 119.99836 * 0.02562 * 7 2 1 10 10 N 1.30628 * 123.22951 * 0.02562 * 9 7 2 11 11 C 1.47575 * 108.34228 * 180.61063 * 10 9 7 12 12 C 1.54791 * 102.10777 * 14.99150 * 11 10 9 13 13 H 1.09005 * 111.01369 * 94.38600 * 12 11 10 14 14 C 1.52997 * 111.02075 * 218.27496 * 12 11 10 15 15 C 1.50699 * 109.46799 * 178.57741 * 14 12 11 16 16 C 1.38238 * 119.98625 * 269.72176 * 15 14 12 17 17 C 1.38217 * 120.01414 * 179.73012 * 16 15 14 18 18 C 1.38352 * 119.98359 * 0.54662 * 17 16 15 19 19 Cl 1.73600 * 120.01236 * 179.74651 * 18 17 16 20 20 C 1.38357 * 119.97745 * 359.72970 * 18 17 16 21 21 C 1.38220 * 119.98177 * 359.97438 * 20 18 17 22 22 O 1.35194 * 123.22061 * 179.97438 * 9 7 2 23 23 H 0.96999 * 120.00374 * 359.97438 * 1 2 3 24 24 H 1.09001 * 110.90780 * 256.78997 * 11 10 9 25 25 H 1.09006 * 110.90750 * 133.19650 * 11 10 9 26 26 H 1.09007 * 109.46814 * 298.57551 * 14 12 11 27 27 H 1.08996 * 109.47199 * 58.57530 * 14 12 11 28 28 H 1.08000 * 119.99330 * 0.02562 * 16 15 14 29 29 H 1.07998 * 120.00995 * 180.27500 * 17 16 15 30 30 H 1.08000 * 120.01060 * 180.02562 * 20 18 17 31 31 H 1.07998 * 119.99030 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2400 1.6178 0.0000 4 1 3.0937 1.6965 -1.2125 5 1 1.2749 2.7464 0.0006 6 1 3.0938 1.6965 1.2125 7 6 2.0072 -1.2143 0.0005 8 1 3.0872 -1.2142 0.0001 9 6 1.3009 -2.4376 0.0005 10 7 -0.0033 -2.5112 -0.0004 11 6 -0.3881 -3.9358 0.0148 12 6 0.9381 -4.6260 0.4158 13 1 0.9833 -4.7904 1.4925 14 6 1.1254 -5.9396 -0.3460 15 6 2.4406 -6.5634 0.0442 16 6 3.5865 -6.2617 -0.6677 17 6 4.7941 -6.8292 -0.3069 18 6 4.8537 -7.7080 0.7600 19 17 6.3688 -8.4262 1.2097 20 6 3.7054 -8.0140 1.4686 21 6 2.4996 -7.4411 1.1106 22 8 1.9100 -3.6445 0.0005 23 1 -0.4850 0.8400 0.0004 24 1 -0.7128 -4.2616 -0.9734 25 1 -1.1634 -4.1214 0.7582 26 1 0.3121 -6.6220 -0.0989 27 1 1.1208 -5.7418 -1.4178 28 1 3.5391 -5.5788 -1.5030 29 1 5.6901 -6.5900 -0.8604 30 1 3.7515 -8.6996 2.3018 31 1 1.6033 -7.6795 1.6639 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260436955.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:14 Heat of formation + Delta-G solvation = -5.211638 kcal Electronic energy + Delta-G solvation = -17007.021713 eV Core-core repulsion = 14086.446494 eV Total energy + Delta-G solvation = -2920.575219 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.72189 -38.87011 -36.50667 -33.80063 -32.88409 -31.33326 -30.98500 -29.30698 -26.84393 -24.26175 -22.77090 -21.54104 -20.81712 -19.79983 -17.06628 -16.77212 -15.87845 -15.37006 -15.21019 -14.82236 -14.26750 -13.69324 -13.51129 -13.45491 -13.20563 -12.45462 -12.05321 -11.97617 -11.62444 -11.43551 -11.40471 -11.19223 -11.12434 -10.77416 -10.66799 -10.46754 -10.28534 -10.03367 -9.13392 -8.96223 -8.48656 -7.79463 -7.38008 -6.42068 -4.64417 1.21621 1.37615 2.13687 3.09988 3.15644 3.18005 3.69724 3.99920 4.13460 4.67700 4.84511 4.92852 4.96102 5.32081 5.35663 5.44176 5.61199 5.67316 5.75747 5.82066 5.97861 6.09831 6.25524 6.27314 6.33621 6.55444 6.70190 6.82624 6.86004 6.94253 7.34856 7.76217 8.21119 8.78366 8.97922 10.10897 10.49034 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.026003 B = 0.004489 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.535506 B = 6236.403157 C = 7073.987407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.734 5.734 2 C 0.078 3.922 3 Si 0.917 3.083 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.451 4.451 8 H 0.082 0.918 9 C 0.375 3.625 10 N -0.600 5.600 11 C 0.007 3.993 12 C 0.054 3.946 13 H 0.066 0.934 14 C -0.074 4.074 15 C -0.062 4.062 16 C -0.086 4.086 17 C -0.109 4.109 18 C -0.043 4.043 19 Cl -0.083 7.083 20 C -0.113 4.113 21 C -0.109 4.109 22 O -0.365 6.365 23 H 0.273 0.727 24 H 0.045 0.955 25 H 0.056 0.944 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.134 0.866 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.084 -12.968 0.798 14.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.489 4.489 8 H 0.100 0.900 9 C 0.175 3.825 10 N -0.347 5.347 11 C -0.124 4.124 12 C -0.005 4.005 13 H 0.084 0.916 14 C -0.112 4.112 15 C -0.063 4.063 16 C -0.104 4.104 17 C -0.128 4.128 18 C -0.069 4.069 19 Cl -0.055 7.055 20 C -0.132 4.132 21 C -0.128 4.128 22 O -0.274 6.274 23 H 0.084 0.916 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.103 0.897 27 H 0.099 0.901 28 H 0.152 0.848 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.451 -12.568 0.771 13.721 hybrid contribution 0.911 -0.041 0.181 0.929 sum 6.362 -12.608 0.953 14.154 Atomic orbital electron populations 1.70010 1.06981 1.27790 1.31100 1.25735 0.94829 1.00388 0.93670 0.86257 0.79750 0.80187 0.79741 1.19052 1.20351 1.19081 1.18504 0.93912 0.86589 1.49935 0.89990 1.21998 0.88078 0.83809 0.88621 1.76249 1.09095 1.07640 1.41685 1.23844 0.95327 0.94502 0.98686 1.23706 0.91077 0.88443 0.97281 0.91582 1.20750 0.93693 0.95317 1.01392 1.20026 0.96061 0.95236 0.94942 1.21094 0.91149 0.98036 1.00116 1.21040 0.98864 0.96554 0.96341 1.20870 0.86875 1.00196 0.98998 1.98346 1.31962 1.82779 1.92382 1.20948 0.91237 1.01030 0.99941 1.21004 0.97427 0.97213 0.97114 1.86954 1.39470 1.17197 1.83758 0.91635 0.93692 0.92531 0.89719 0.90112 0.84771 0.85152 0.85314 0.85287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.45 11.74 55.56 0.65 -19.80 16 2 C 0.08 2.06 5.50 -17.33 -0.10 1.96 16 3 Si 0.92 19.29 29.56 -169.99 -5.02 14.26 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.45 -12.58 9.50 -37.69 -0.36 -12.94 16 8 H 0.08 2.16 7.85 -52.49 -0.41 1.75 16 9 C 0.38 10.54 7.43 -16.92 -0.13 10.42 16 10 N -0.60 -17.02 9.69 -59.54 -0.58 -17.60 16 11 C 0.01 0.17 7.68 -2.51 -0.02 0.15 16 12 C 0.05 1.10 3.71 -25.79 -0.10 1.00 16 13 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 14 C -0.07 -1.15 5.07 -27.89 -0.14 -1.29 16 15 C -0.06 -0.93 5.00 -104.62 -0.52 -1.45 16 16 C -0.09 -1.28 9.56 -39.59 -0.38 -1.65 16 17 C -0.11 -1.48 9.83 -39.55 -0.39 -1.87 16 18 C -0.04 -0.56 6.32 -39.50 -0.25 -0.81 16 19 Cl -0.08 -0.99 28.96 -51.86 -1.50 -2.49 16 20 C -0.11 -1.41 9.83 -39.54 -0.39 -1.80 16 21 C -0.11 -1.42 9.70 -39.59 -0.38 -1.81 16 22 O -0.37 -9.05 10.62 -17.28 -0.18 -9.23 16 23 H 0.27 6.91 8.29 -40.82 -0.34 6.57 16 24 H 0.04 0.97 7.91 -51.93 -0.41 0.56 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.08 1.08 8.09 -51.93 -0.42 0.66 16 27 H 0.08 1.27 8.08 -51.93 -0.42 0.85 16 28 H 0.13 2.01 8.06 -52.49 -0.42 1.58 16 29 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 289.76 15.07 4.37 4.37 Total: -1.00 -30.64 289.76 -8.75 -39.39 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -3.33 Total: 1.19 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -3.15 Total: -10.09 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.08 Total: -37.40 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.18 Total: -9.23 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.26 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.50 Total: -2.49 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.64 -8.75 -39.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436955.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.178 kcal (2) G-P(sol) polarization free energy of solvation -30.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds