Wall clock time and date at job start Mon Mar 30 2020 06:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30606 * 1 3 3 Si 1.86797 * 119.99713 * 2 1 4 4 H 1.48500 * 109.47121 * 240.00053 * 3 2 1 5 5 H 1.48500 * 109.47111 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47479 * 120.00034 * 3 2 1 7 7 C 1.40217 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99558 * 179.97438 * 7 2 1 9 9 C 1.41254 * 119.99836 * 0.02562 * 7 2 1 10 10 N 1.30628 * 123.22951 * 0.02562 * 9 7 2 11 11 C 1.47575 * 108.34228 * 180.61063 * 10 9 7 12 12 C 1.54791 * 102.10777 * 14.99150 * 11 10 9 13 13 H 1.09005 * 111.01369 * 94.38600 * 12 11 10 14 14 C 1.52997 * 111.02075 * 218.27496 * 12 11 10 15 15 C 1.50699 * 109.46799 * 178.57741 * 14 12 11 16 16 C 1.38238 * 119.98625 * 269.72176 * 15 14 12 17 17 C 1.38217 * 120.01414 * 179.73012 * 16 15 14 18 18 C 1.38352 * 119.98359 * 0.54662 * 17 16 15 19 19 Cl 1.73600 * 120.01236 * 179.74651 * 18 17 16 20 20 C 1.38357 * 119.97745 * 359.72970 * 18 17 16 21 21 C 1.38220 * 119.98177 * 359.97438 * 20 18 17 22 22 O 1.35194 * 123.22061 * 179.97438 * 9 7 2 23 23 H 0.96999 * 120.00374 * 359.97438 * 1 2 3 24 24 H 1.09001 * 110.90780 * 256.78997 * 11 10 9 25 25 H 1.09006 * 110.90750 * 133.19650 * 11 10 9 26 26 H 1.09007 * 109.46814 * 298.57551 * 14 12 11 27 27 H 1.08996 * 109.47199 * 58.57530 * 14 12 11 28 28 H 1.08000 * 119.99330 * 0.02562 * 16 15 14 29 29 H 1.07998 * 120.00995 * 180.27500 * 17 16 15 30 30 H 1.08000 * 120.01060 * 180.02562 * 20 18 17 31 31 H 1.07998 * 119.99030 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2400 1.6178 0.0000 4 1 3.0937 1.6965 -1.2125 5 1 1.2749 2.7464 0.0006 6 1 3.0938 1.6965 1.2125 7 6 2.0072 -1.2143 0.0005 8 1 3.0872 -1.2142 0.0001 9 6 1.3009 -2.4376 0.0005 10 7 -0.0033 -2.5112 -0.0004 11 6 -0.3881 -3.9358 0.0148 12 6 0.9381 -4.6260 0.4158 13 1 0.9833 -4.7904 1.4925 14 6 1.1254 -5.9396 -0.3460 15 6 2.4406 -6.5634 0.0442 16 6 3.5865 -6.2617 -0.6677 17 6 4.7941 -6.8292 -0.3069 18 6 4.8537 -7.7080 0.7600 19 17 6.3688 -8.4262 1.2097 20 6 3.7054 -8.0140 1.4686 21 6 2.4996 -7.4411 1.1106 22 8 1.9100 -3.6445 0.0005 23 1 -0.4850 0.8400 0.0004 24 1 -0.7128 -4.2616 -0.9734 25 1 -1.1634 -4.1214 0.7582 26 1 0.3121 -6.6220 -0.0989 27 1 1.1208 -5.7418 -1.4178 28 1 3.5391 -5.5788 -1.5030 29 1 5.6901 -6.5900 -0.8604 30 1 3.7515 -8.6996 2.3018 31 1 1.6033 -7.6795 1.6639 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260436955.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:14 Heat of formation + Delta-G solvation = -25.195068 kcal Electronic energy + Delta-G solvation = -17007.888259 eV Core-core repulsion = 14086.446494 eV Total energy + Delta-G solvation = -2921.441766 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.35577 -40.15257 -37.50173 -35.66419 -34.32867 -33.25499 -32.01311 -30.90088 -28.55507 -25.90650 -23.80612 -23.02079 -22.45129 -21.49842 -18.77176 -18.10710 -17.41800 -17.20243 -16.43317 -16.10000 -15.85260 -15.39084 -14.64219 -14.45187 -14.34991 -14.27408 -13.76447 -13.46767 -13.07897 -12.96869 -12.89064 -12.53751 -12.35435 -12.27671 -12.10043 -11.87881 -11.87446 -11.75206 -11.03476 -9.99134 -9.89455 -9.48160 -9.36377 -8.39940 -6.76071 0.14729 0.34514 1.13927 1.42847 1.44039 1.57915 2.14517 2.25929 2.62825 3.02713 3.36774 3.69910 3.81670 3.96397 4.08644 4.16804 4.18957 4.39187 4.39888 4.68981 4.71300 4.73850 4.87765 4.97573 5.03038 5.12342 5.24076 5.26207 5.36675 5.60892 5.82823 5.89570 6.14259 6.73817 6.91370 8.09718 8.53337 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.026003 B = 0.004489 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.535506 B = 6236.403157 C = 7073.987407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.033 3.967 3 Si 0.999 3.001 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.488 4.488 8 H 0.085 0.915 9 C 0.355 3.645 10 N -0.644 5.644 11 C 0.002 3.998 12 C 0.057 3.943 13 H 0.069 0.931 14 C -0.062 4.062 15 C -0.081 4.081 16 C -0.104 4.104 17 C -0.116 4.116 18 C -0.049 4.049 19 Cl -0.072 7.072 20 C -0.112 4.112 21 C -0.106 4.106 22 O -0.377 6.377 23 H 0.280 0.720 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.119 0.881 27 H 0.073 0.927 28 H 0.122 0.878 29 H 0.142 0.858 30 H 0.154 0.846 31 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.817 -13.597 1.489 15.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.188 4.188 3 Si 0.818 3.182 4 H -0.181 1.181 5 H -0.191 1.191 6 H -0.182 1.182 7 C -0.525 4.525 8 H 0.103 0.897 9 C 0.155 3.845 10 N -0.391 5.391 11 C -0.128 4.128 12 C -0.001 4.001 13 H 0.087 0.913 14 C -0.099 4.099 15 C -0.081 4.081 16 C -0.122 4.122 17 C -0.135 4.135 18 C -0.075 4.075 19 Cl -0.043 7.043 20 C -0.130 4.130 21 C -0.124 4.124 22 O -0.285 6.285 23 H 0.090 0.910 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.137 0.863 27 H 0.092 0.908 28 H 0.140 0.860 29 H 0.160 0.840 30 H 0.172 0.828 31 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.183 -13.233 1.462 14.679 hybrid contribution 0.674 0.027 -0.008 0.674 sum 6.857 -13.206 1.454 14.951 Atomic orbital electron populations 1.70121 1.08915 1.29366 1.31584 1.26809 0.95709 1.04047 0.92228 0.85027 0.78326 0.74693 0.80138 1.18148 1.19102 1.18230 1.18990 0.94458 0.87781 1.51312 0.89656 1.22284 0.88539 0.84947 0.88742 1.76135 1.09637 1.11378 1.41980 1.23888 0.96810 0.92540 0.99592 1.23885 0.88685 0.89357 0.98172 0.91320 1.20677 0.95649 0.93306 1.00264 1.20036 0.95416 0.96495 0.96167 1.21133 0.92077 0.98571 1.00410 1.21174 0.98844 0.96665 0.96811 1.21043 0.87759 0.99930 0.98797 1.98351 1.31243 1.82472 1.92213 1.21271 0.90674 1.00875 1.00221 1.21284 0.98694 0.96177 0.96289 1.86927 1.40674 1.17098 1.83836 0.90952 0.92891 0.91365 0.86316 0.90802 0.85961 0.84050 0.82829 0.82779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -43.85 11.74 21.87 0.26 -43.60 16 2 C 0.03 1.73 5.50 85.36 0.47 2.20 16 3 Si 1.00 39.39 29.56 68.60 2.03 41.41 16 4 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 5 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 6 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 7 C -0.49 -27.80 9.50 23.49 0.22 -27.57 16 8 H 0.09 4.60 7.85 -2.91 -0.02 4.57 16 9 C 0.36 20.51 7.43 85.61 0.64 21.15 16 10 N -0.64 -37.37 9.69 -456.23 -4.42 -41.79 16 11 C 0.00 0.11 7.68 86.78 0.67 0.78 16 12 C 0.06 2.31 3.71 31.20 0.12 2.43 16 13 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 14 C -0.06 -1.84 5.07 29.85 0.15 -1.69 16 15 C -0.08 -2.30 5.00 -19.86 -0.10 -2.40 16 16 C -0.10 -3.07 9.56 22.26 0.21 -2.85 16 17 C -0.12 -3.06 9.83 22.29 0.22 -2.84 16 18 C -0.05 -1.19 6.32 22.33 0.14 -1.05 16 19 Cl -0.07 -1.55 28.96 -2.72 -0.08 -1.63 16 20 C -0.11 -2.49 9.83 22.29 0.22 -2.28 16 21 C -0.11 -2.50 9.70 22.27 0.22 -2.28 16 22 O -0.38 -19.05 10.62 -84.74 -0.90 -19.95 16 23 H 0.28 14.32 8.29 -92.71 -0.77 13.55 16 24 H 0.05 2.29 7.91 -2.39 -0.02 2.27 16 25 H 0.07 2.88 8.14 -2.38 -0.02 2.86 16 26 H 0.12 2.70 8.09 -2.38 -0.02 2.68 16 27 H 0.07 2.30 8.08 -2.39 -0.02 2.28 16 28 H 0.12 3.80 8.06 -2.91 -0.02 3.77 16 29 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 30 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 31 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -67.18 289.76 1.20 -65.98 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 1.14 Total: 15.99 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: 3.17 Total: -16.42 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -4.16 Total: -85.38 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.90 Total: -19.95 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.41 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.08 Total: -1.63 kcal Total: -67.18 1.20 -65.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436955.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.784 kcal (2) G-P(sol) polarization free energy of solvation -67.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds