Wall clock time and date at job start Mon Mar 30 2020 06:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 120.00051 * 2 1 4 4 H 1.48499 * 109.47069 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47095 * 300.00085 * 3 2 1 6 6 H 1.48504 * 109.47098 * 59.99832 * 3 2 1 7 7 C 1.37880 * 119.99687 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99421 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99996 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46912 * 180.02562 * 9 7 2 11 11 H 1.08995 * 110.92037 * 308.98829 * 10 9 7 12 12 C 1.54815 * 111.04451 * 185.00276 * 10 9 7 13 13 N 1.47596 * 102.00336 * 218.49166 * 12 10 9 14 14 C 1.29659 * 108.44023 * 15.05706 * 13 12 10 15 15 C 1.47942 * 123.08746 * 180.37716 * 14 13 12 16 16 C 1.39529 * 120.15002 * 180.28086 * 15 14 13 17 17 C 1.37925 * 119.87885 * 180.20580 * 16 15 14 18 18 C 1.38403 * 120.17064 * 359.81414 * 17 16 15 19 19 C 1.38274 * 120.29191 * 359.95327 * 18 17 16 20 20 C 1.38160 * 120.12571 * 359.97438 * 19 18 17 21 21 Cl 1.73599 * 120.08435 * 179.97438 * 20 19 18 22 22 O 1.34942 * 113.82329 * 0.64516 * 14 13 12 23 23 H 0.97004 * 119.99619 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47407 * 60.00534 * 9 7 2 25 25 H 1.09004 * 109.47207 * 300.00095 * 9 7 2 26 26 H 1.09001 * 110.92489 * 100.31329 * 12 10 9 27 27 H 1.09001 * 110.95474 * 336.67823 * 12 10 9 28 28 H 1.08009 * 120.05994 * 359.97438 * 16 15 14 29 29 H 1.08004 * 119.91945 * 179.78775 * 17 16 15 30 30 H 1.07998 * 119.85137 * 179.97438 * 18 17 16 31 31 H 1.08006 * 119.93386 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9850 -3.5417 -0.7919 12 6 1.5124 -5.0200 -0.1265 13 7 2.3001 -5.8791 0.7790 14 6 3.0373 -5.1190 1.5273 15 6 3.9648 -5.6487 2.5510 16 6 4.7257 -4.7737 3.3271 17 6 5.5918 -5.2738 4.2769 18 6 5.7049 -6.6404 4.4645 19 6 4.9506 -7.5137 3.7026 20 6 4.0782 -7.0260 2.7488 21 17 3.1323 -8.1234 1.7924 22 8 2.8766 -3.8003 1.2906 23 1 -0.4850 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6246 -2.5570 0.8897 26 1 1.5547 -5.3916 -1.1504 27 1 0.4802 -4.9389 0.2139 28 1 4.6395 -3.7069 3.1817 29 1 6.1837 -4.5972 4.8757 30 1 6.3850 -7.0263 5.2094 31 1 5.0431 -8.5790 3.8541 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260454919.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:50 Heat of formation + Delta-G solvation = 7.848523 kcal Electronic energy + Delta-G solvation = -17079.944604 eV Core-core repulsion = 14159.935716 eV Total energy + Delta-G solvation = -2920.008888 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.60245 -39.03857 -36.23856 -33.62152 -33.01541 -32.06266 -30.84586 -30.12820 -26.68803 -23.80878 -23.09795 -22.38071 -20.83284 -19.89440 -17.43534 -16.70445 -16.14513 -15.64456 -15.29836 -14.87859 -14.49412 -14.11562 -13.87024 -13.36438 -13.22757 -12.55438 -12.35303 -11.91887 -11.63455 -11.50510 -11.40694 -11.27191 -11.12793 -10.96950 -10.61681 -10.54980 -9.86535 -9.48151 -9.22410 -8.98827 -8.83065 -8.45990 -8.26522 -6.07825 -4.10284 0.70332 1.10550 2.24645 2.67807 3.28051 3.35591 3.40212 3.56082 3.69661 4.39533 4.40964 4.72619 4.81686 5.09677 5.24558 5.28094 5.32532 5.38080 5.66013 5.73568 5.86474 5.94706 6.11260 6.17643 6.29635 6.33190 6.52620 6.63400 6.88660 7.41334 7.54907 7.87978 8.15134 8.27413 8.93493 9.53661 11.03503 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.027018 B = 0.005053 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.098779 B = 5539.965732 C = 6437.316346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.518 4.518 8 H 0.059 0.941 9 C 0.027 3.973 10 C 0.064 3.936 11 H 0.080 0.920 12 C -0.013 4.013 13 N -0.519 5.519 14 C 0.320 3.680 15 C -0.027 4.027 16 C -0.067 4.067 17 C -0.125 4.125 18 C -0.094 4.094 19 C -0.124 4.124 20 C 0.002 3.998 21 Cl -0.029 7.029 22 O -0.323 6.323 23 H 0.261 0.739 24 H 0.040 0.960 25 H 0.029 0.971 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.146 0.854 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.204 -14.081 7.362 18.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.556 4.556 8 H 0.077 0.923 9 C -0.010 4.010 10 C 0.007 3.993 11 H 0.098 0.902 12 C -0.142 4.142 13 N -0.255 5.255 14 C 0.097 3.903 15 C -0.029 4.029 16 C -0.087 4.087 17 C -0.143 4.143 18 C -0.113 4.113 19 C -0.143 4.143 20 C -0.027 4.027 21 Cl 0.001 6.999 22 O -0.226 6.226 23 H 0.071 0.929 24 H 0.058 0.942 25 H 0.047 0.953 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.164 0.836 29 H 0.152 0.848 30 H 0.151 0.849 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.720 -14.694 7.129 19.005 hybrid contribution 0.195 1.686 -0.281 1.720 sum 9.915 -13.008 6.848 17.732 Atomic orbital electron populations 1.69965 1.06074 1.26756 1.50637 1.25004 0.94867 0.99378 0.95117 0.86476 0.80117 0.83472 0.77615 1.19665 1.20961 1.20926 1.21154 0.93162 0.90448 1.50818 0.92308 1.19270 0.92798 0.90248 0.98645 1.24562 0.95556 0.97549 0.81596 0.90167 1.24219 0.99793 0.91233 0.98941 1.75391 1.09575 1.30070 1.10416 1.23200 0.91922 0.82243 0.92937 1.17724 0.97459 0.91256 0.96488 1.21453 0.93310 1.00748 0.93151 1.21196 0.99019 0.95563 0.98497 1.21262 0.98265 0.93232 0.98501 1.20993 0.96599 1.00803 0.95863 1.21012 0.96096 0.89988 0.95580 1.98412 1.70285 1.61367 1.69828 1.87157 1.75992 1.21579 1.37886 0.92887 0.94150 0.95252 0.88914 0.89105 0.83618 0.84801 0.84913 0.84543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -14.53 9.07 -34.44 -0.31 -14.84 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.03 0.70 4.67 -27.88 -0.13 0.57 16 10 C 0.06 1.38 3.64 -25.77 -0.09 1.29 16 11 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 12 C -0.01 -0.24 7.68 -2.49 -0.02 -0.26 16 13 N -0.52 -9.82 8.71 -57.67 -0.50 -10.32 16 14 C 0.32 6.08 7.56 -14.49 -0.11 5.97 16 15 C -0.03 -0.43 5.88 -104.93 -0.62 -1.04 16 16 C -0.07 -0.89 9.67 -39.21 -0.38 -1.27 16 17 C -0.12 -1.26 10.03 -39.63 -0.40 -1.65 16 18 C -0.09 -0.84 10.04 -39.51 -0.40 -1.24 16 19 C -0.12 -1.30 9.82 -39.60 -0.39 -1.69 16 20 C 0.00 0.03 6.35 -39.10 -0.25 -0.22 16 21 Cl -0.03 -0.41 25.97 -51.86 -1.35 -1.76 16 22 O -0.32 -7.01 10.37 -16.54 -0.17 -7.18 16 23 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 24 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 27 H 0.09 1.73 7.92 -51.93 -0.41 1.32 16 28 H 0.15 2.00 7.77 -52.48 -0.41 1.59 16 29 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 30 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 LS Contribution 287.55 15.07 4.33 4.33 Total: -1.00 -31.13 287.55 -8.48 -39.61 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: -3.32 Total: -2.56 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -3.19 Total: -12.84 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.23 Total: -36.12 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.17 Total: -7.18 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.35 Total: -1.76 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.13 -8.48 -39.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260454919.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.462 kcal (2) G-P(sol) polarization free energy of solvation -31.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds