Wall clock time and date at job start Mon Mar 30 2020 06:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99877 * 2 1 4 4 H 1.48502 * 109.46924 * 239.99661 * 3 2 1 5 5 H 1.48500 * 109.46827 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.46986 * 119.99814 * 3 2 1 7 7 C 1.37875 * 120.00244 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00484 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99824 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47095 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.92002 * 51.00951 * 10 9 7 12 12 C 1.54823 * 111.04551 * 174.99580 * 10 9 7 13 13 N 1.47594 * 101.99918 * 141.54999 * 12 10 9 14 14 C 1.29656 * 108.44446 * 344.94147 * 13 12 10 15 15 C 1.47942 * 123.08672 * 179.58444 * 14 13 12 16 16 C 1.39536 * 120.14512 * 180.02562 * 15 14 13 17 17 C 1.37935 * 119.87083 * 179.97438 * 16 15 14 18 18 C 1.38390 * 120.17454 * 0.02562 * 17 16 15 19 19 C 1.38275 * 120.29841 * 359.97438 * 18 17 16 20 20 C 1.38161 * 120.11774 * 0.02562 * 19 18 17 21 21 Cl 1.73600 * 120.08170 * 179.97438 * 20 19 18 22 22 O 1.34942 * 113.82444 * 359.85134 * 14 13 12 23 23 H 0.97002 * 119.99622 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47514 * 59.99640 * 9 7 2 25 25 H 1.09002 * 109.46734 * 299.99582 * 9 7 2 26 26 H 1.08999 * 110.92300 * 23.37490 * 12 10 9 27 27 H 1.08999 * 110.92244 * 259.72439 * 12 10 9 28 28 H 1.07993 * 120.06183 * 359.95435 * 16 15 14 29 29 H 1.08004 * 119.91370 * 180.02562 * 17 16 15 30 30 H 1.07998 * 119.85578 * 180.02562 * 18 17 16 31 31 H 1.07999 * 119.93945 * 179.72548 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 1 2.9852 -3.5415 0.7919 12 6 1.5126 -5.0200 0.1266 13 7 2.3010 -5.8792 -0.7782 14 6 3.0385 -5.1194 -1.5263 15 6 3.9673 -5.6493 -2.5486 16 6 4.7333 -4.7747 -3.3202 17 6 5.5979 -5.2750 -4.2714 18 6 5.7068 -6.6413 -4.4625 19 6 4.9512 -7.5145 -3.7018 20 6 4.0813 -7.0267 -2.7457 21 17 3.1326 -8.1237 -1.7917 22 8 2.8854 -3.8010 -1.2829 23 1 -0.4850 0.8401 -0.0004 24 1 0.6248 -2.5571 -0.8896 25 1 0.6242 -2.5566 0.8904 26 1 0.4807 -4.9386 -0.2149 27 1 1.5543 -5.3913 1.1505 28 1 4.6491 -3.7082 -3.1731 29 1 6.1914 -4.5987 -4.8687 30 1 6.3857 -7.0275 -5.2084 31 1 5.0375 -8.5795 -3.8588 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260454923.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:51 Heat of formation + Delta-G solvation = 7.839849 kcal Electronic energy + Delta-G solvation = -17079.859971 eV Core-core repulsion = 14159.850707 eV Total energy + Delta-G solvation = -2920.009264 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.61821 -39.04291 -36.23893 -33.62167 -33.02407 -32.06302 -30.84616 -30.12811 -26.68834 -23.80637 -23.10285 -22.38088 -20.85214 -19.88815 -17.43962 -16.70069 -16.14688 -15.64475 -15.30277 -14.87846 -14.49811 -14.11289 -13.87175 -13.36589 -13.22898 -12.55170 -12.33979 -11.92120 -11.63818 -11.50629 -11.40728 -11.27033 -11.12996 -10.96019 -10.61374 -10.56607 -9.86390 -9.49742 -9.21949 -8.99746 -8.83010 -8.44985 -8.26241 -6.07248 -4.09946 0.70302 1.10453 2.24587 2.67809 3.30862 3.35073 3.37881 3.55901 3.69647 4.39352 4.41079 4.72563 4.81690 5.09631 5.24488 5.28371 5.32723 5.38099 5.66155 5.73561 5.87242 5.94645 6.11284 6.17709 6.29941 6.33271 6.52587 6.63307 6.88746 7.41332 7.54983 7.88039 8.15795 8.27758 8.93255 9.53871 11.03978 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.027019 B = 0.005052 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.043040 B = 5540.631720 C = 6438.058137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.519 4.519 8 H 0.058 0.942 9 C 0.028 3.972 10 C 0.064 3.936 11 H 0.079 0.921 12 C -0.012 4.012 13 N -0.519 5.519 14 C 0.321 3.679 15 C -0.027 4.027 16 C -0.067 4.067 17 C -0.125 4.125 18 C -0.094 4.094 19 C -0.124 4.124 20 C 0.002 3.998 21 Cl -0.028 7.028 22 O -0.323 6.323 23 H 0.263 0.737 24 H 0.029 0.971 25 H 0.040 0.960 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.146 0.854 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.177 -14.066 -7.376 18.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.076 0.924 9 C -0.009 4.009 10 C 0.007 3.993 11 H 0.097 0.903 12 C -0.142 4.142 13 N -0.255 5.255 14 C 0.097 3.903 15 C -0.029 4.029 16 C -0.087 4.087 17 C -0.143 4.143 18 C -0.113 4.113 19 C -0.143 4.143 20 C -0.027 4.027 21 Cl 0.001 6.999 22 O -0.226 6.226 23 H 0.072 0.928 24 H 0.047 0.953 25 H 0.058 0.942 26 H 0.109 0.891 27 H 0.111 0.889 28 H 0.164 0.836 29 H 0.152 0.848 30 H 0.151 0.849 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.686 -14.674 -7.141 18.977 hybrid contribution 0.220 1.678 0.284 1.716 sum 9.906 -12.995 -6.857 17.721 Atomic orbital electron populations 1.69942 1.06072 1.26982 1.50446 1.24996 0.94866 0.99346 0.95090 0.86589 0.79542 0.82800 0.78700 1.20144 1.21228 1.20180 1.21078 0.93089 0.90475 1.51100 0.92416 1.19259 0.92772 0.90210 0.98632 1.24512 0.95468 0.97557 0.81731 0.90268 1.24227 0.99796 0.91193 0.98954 1.75384 1.09713 1.30039 1.10362 1.23209 0.91972 0.82173 0.92897 1.17718 0.97384 0.91253 0.96559 1.21455 0.93271 1.00747 0.93182 1.21195 0.99059 0.95565 0.98454 1.21260 0.98259 0.93232 0.98507 1.20993 0.96656 1.00806 0.95799 1.21010 0.96066 0.89984 0.95613 1.98412 1.70116 1.61390 1.69972 1.87080 1.75568 1.21634 1.38316 0.92770 0.95276 0.94150 0.89103 0.88905 0.83618 0.84800 0.84913 0.84539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.59 9.07 -34.44 -0.31 -14.90 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.03 0.72 4.69 -27.88 -0.13 0.59 16 10 C 0.06 1.38 3.62 -25.77 -0.09 1.29 16 11 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 12 C -0.01 -0.23 7.69 -2.48 -0.02 -0.25 16 13 N -0.52 -9.83 8.71 -57.67 -0.50 -10.33 16 14 C 0.32 6.10 7.57 -14.50 -0.11 5.99 16 15 C -0.03 -0.42 5.88 -104.93 -0.62 -1.04 16 16 C -0.07 -0.89 9.67 -39.21 -0.38 -1.27 16 17 C -0.12 -1.26 10.03 -39.64 -0.40 -1.65 16 18 C -0.09 -0.84 10.04 -39.51 -0.40 -1.24 16 19 C -0.12 -1.30 9.82 -39.60 -0.39 -1.68 16 20 C 0.00 0.03 6.35 -39.10 -0.25 -0.22 16 21 Cl -0.03 -0.41 25.97 -51.86 -1.35 -1.76 16 22 O -0.32 -7.01 10.36 -16.54 -0.17 -7.18 16 23 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16 26 H 0.09 1.73 7.91 -51.93 -0.41 1.32 16 27 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 28 H 0.15 2.00 7.77 -52.49 -0.41 1.60 16 29 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 30 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 287.54 15.07 4.33 4.33 Total: -1.00 -31.08 287.54 -8.48 -39.56 By element: Atomic # 1 Polarization: 0.82 SS G_CDS: -3.32 Total: -2.50 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -3.19 Total: -12.83 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.23 Total: -36.14 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.17 Total: -7.18 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.35 Total: -1.76 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.08 -8.48 -39.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260454923.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.400 kcal (2) G-P(sol) polarization free energy of solvation -31.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds