Wall clock time and date at job start Mon Mar 30 2020 06:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99877 * 2 1 4 4 H 1.48502 * 109.46924 * 239.99661 * 3 2 1 5 5 H 1.48500 * 109.46827 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.46986 * 119.99814 * 3 2 1 7 7 C 1.37875 * 120.00244 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00484 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99824 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47095 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.92002 * 51.00951 * 10 9 7 12 12 C 1.54823 * 111.04551 * 174.99580 * 10 9 7 13 13 N 1.47594 * 101.99918 * 141.54999 * 12 10 9 14 14 C 1.29656 * 108.44446 * 344.94147 * 13 12 10 15 15 C 1.47942 * 123.08672 * 179.58444 * 14 13 12 16 16 C 1.39536 * 120.14512 * 180.02562 * 15 14 13 17 17 C 1.37935 * 119.87083 * 179.97438 * 16 15 14 18 18 C 1.38390 * 120.17454 * 0.02562 * 17 16 15 19 19 C 1.38275 * 120.29841 * 359.97438 * 18 17 16 20 20 C 1.38161 * 120.11774 * 0.02562 * 19 18 17 21 21 Cl 1.73600 * 120.08170 * 179.97438 * 20 19 18 22 22 O 1.34942 * 113.82444 * 359.85134 * 14 13 12 23 23 H 0.97002 * 119.99622 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47514 * 59.99640 * 9 7 2 25 25 H 1.09002 * 109.46734 * 299.99582 * 9 7 2 26 26 H 1.08999 * 110.92300 * 23.37490 * 12 10 9 27 27 H 1.08999 * 110.92244 * 259.72439 * 12 10 9 28 28 H 1.07993 * 120.06183 * 359.95435 * 16 15 14 29 29 H 1.08004 * 119.91370 * 180.02562 * 17 16 15 30 30 H 1.07998 * 119.85578 * 180.02562 * 18 17 16 31 31 H 1.07999 * 119.93945 * 179.72548 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 1 2.9852 -3.5415 0.7919 12 6 1.5126 -5.0200 0.1266 13 7 2.3010 -5.8792 -0.7782 14 6 3.0385 -5.1194 -1.5263 15 6 3.9673 -5.6493 -2.5486 16 6 4.7333 -4.7747 -3.3202 17 6 5.5979 -5.2750 -4.2714 18 6 5.7068 -6.6413 -4.4625 19 6 4.9512 -7.5145 -3.7018 20 6 4.0813 -7.0267 -2.7457 21 17 3.1326 -8.1237 -1.7917 22 8 2.8854 -3.8010 -1.2829 23 1 -0.4850 0.8401 -0.0004 24 1 0.6248 -2.5571 -0.8896 25 1 0.6242 -2.5566 0.8904 26 1 0.4807 -4.9386 -0.2149 27 1 1.5543 -5.3913 1.1505 28 1 4.6491 -3.7082 -3.1731 29 1 6.1914 -4.5987 -4.8687 30 1 6.3857 -7.0275 -5.2084 31 1 5.0375 -8.5795 -3.8588 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260454923.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:51 Heat of formation + Delta-G solvation = -12.470738 kcal Electronic energy + Delta-G solvation = -17080.740704 eV Core-core repulsion = 14159.850707 eV Total energy + Delta-G solvation = -2920.889997 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.15444 -40.02955 -37.27037 -35.60708 -34.59431 -33.55556 -31.87819 -31.57601 -28.44179 -25.48915 -24.30609 -23.55281 -22.51083 -21.28535 -18.77181 -18.54006 -17.46558 -17.18219 -16.69849 -16.30532 -15.86170 -15.52302 -14.81090 -14.61616 -14.48642 -14.28846 -14.09885 -13.66574 -13.22964 -12.84640 -12.76641 -12.61428 -12.46776 -12.38094 -12.35300 -12.13662 -11.69957 -11.38389 -10.65032 -10.61388 -10.53713 -9.80598 -9.54892 -8.25408 -6.36760 -0.33250 0.21447 1.23057 1.38504 1.39907 1.41918 1.50082 2.18772 2.38144 2.69571 3.00517 3.09806 3.68092 3.80709 3.98299 4.02482 4.27180 4.32837 4.34926 4.42831 4.57161 4.63886 4.80314 4.91190 5.14436 5.23685 5.28168 5.35393 5.45255 5.47419 5.68342 5.79090 6.10009 6.63940 6.74102 7.31794 8.86110 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.027019 B = 0.005052 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.043040 B = 5540.631720 C = 6438.058137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.967 3.033 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.540 4.540 8 H 0.057 0.943 9 C 0.036 3.964 10 C 0.068 3.932 11 H 0.084 0.916 12 C -0.006 4.006 13 N -0.525 5.525 14 C 0.317 3.683 15 C -0.065 4.065 16 C -0.081 4.081 17 C -0.115 4.115 18 C -0.071 4.071 19 C -0.118 4.118 20 C -0.011 4.011 21 Cl -0.044 7.044 22 O -0.344 6.344 23 H 0.266 0.734 24 H -0.003 1.003 25 H 0.029 0.971 26 H 0.084 0.916 27 H 0.115 0.885 28 H 0.131 0.869 29 H 0.167 0.833 30 H 0.180 0.820 31 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.707 -14.686 -8.936 21.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.791 3.209 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.578 4.578 8 H 0.075 0.925 9 C -0.001 4.001 10 C 0.011 3.989 11 H 0.102 0.898 12 C -0.135 4.135 13 N -0.261 5.261 14 C 0.094 3.906 15 C -0.067 4.067 16 C -0.101 4.101 17 C -0.133 4.133 18 C -0.090 4.090 19 C -0.137 4.137 20 C -0.039 4.039 21 Cl -0.014 7.014 22 O -0.248 6.248 23 H 0.075 0.925 24 H 0.016 0.984 25 H 0.047 0.953 26 H 0.102 0.898 27 H 0.133 0.867 28 H 0.149 0.851 29 H 0.184 0.816 30 H 0.197 0.803 31 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 12.221 -15.317 -8.698 21.439 hybrid contribution -0.500 1.815 0.653 1.993 sum 11.720 -13.502 -8.045 19.606 Atomic orbital electron populations 1.70069 1.07717 1.28115 1.51128 1.25927 0.95775 1.03275 0.94388 0.85472 0.78301 0.77922 0.79211 1.19404 1.20546 1.18955 1.21432 0.93305 0.91780 1.51287 0.92456 1.19043 0.93055 0.91528 0.96464 1.24240 0.95017 0.97440 0.82226 0.89838 1.24190 0.99174 0.89804 1.00369 1.75400 1.10323 1.29495 1.10872 1.23895 0.92346 0.80878 0.93476 1.17868 0.98700 0.92581 0.97523 1.21502 0.94343 0.99939 0.94346 1.21586 0.97706 0.96935 0.97050 1.21807 0.97102 0.92311 0.97777 1.21408 0.95266 1.02649 0.94346 1.21221 0.97061 0.88987 0.96660 1.98401 1.70795 1.61557 1.70674 1.87030 1.75767 1.23745 1.38257 0.92523 0.98443 0.95339 0.89807 0.86733 0.85094 0.81568 0.80310 0.81744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.39 13.29 21.45 0.28 -56.10 16 2 C 0.00 0.27 5.46 84.65 0.46 0.73 16 3 Si 0.97 44.35 29.54 68.60 2.03 46.38 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.54 -31.15 9.07 25.60 0.23 -30.91 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.04 1.95 4.69 29.85 0.14 2.09 16 10 C 0.07 3.03 3.62 31.22 0.11 3.15 16 11 H 0.08 3.63 8.14 -2.39 -0.02 3.61 16 12 C -0.01 -0.24 7.69 86.79 0.67 0.43 16 13 N -0.53 -20.33 8.71 -450.91 -3.93 -24.26 16 14 C 0.32 12.37 7.57 87.59 0.66 13.04 16 15 C -0.06 -2.02 5.88 -20.06 -0.12 -2.14 16 16 C -0.08 -2.11 9.67 22.51 0.22 -1.90 16 17 C -0.12 -1.92 10.03 22.23 0.22 -1.69 16 18 C -0.07 -0.93 10.04 22.31 0.22 -0.71 16 19 C -0.12 -2.06 9.82 22.26 0.22 -1.85 16 20 C -0.01 -0.28 6.35 22.58 0.14 -0.14 16 21 Cl -0.04 -1.24 25.97 -2.72 -0.07 -1.31 16 22 O -0.34 -15.56 10.36 -82.11 -0.85 -16.41 16 23 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 24 H 0.00 -0.17 8.14 -2.39 -0.02 -0.18 16 25 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.08 3.35 7.91 -2.39 -0.02 3.33 16 27 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 28 H 0.13 3.69 7.77 -2.91 -0.02 3.67 16 29 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 30 H 0.18 0.81 8.06 -2.91 -0.02 0.78 16 31 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -69.52 287.54 1.79 -67.74 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: 1.14 Total: 3.87 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: 3.19 Total: -19.91 kcal Atomic # 7 Polarization: -76.72 SS G_CDS: -3.64 Total: -80.37 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.85 Total: -16.41 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -0.07 Total: -1.31 kcal Total: -69.52 1.79 -67.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260454923.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.267 kcal (2) G-P(sol) polarization free energy of solvation -69.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds