Wall clock time and date at job start Mon Mar 30 2020 06:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00057 * 2 1 4 4 H 1.48494 * 109.47277 * 239.99442 * 3 2 1 5 5 H 1.48500 * 109.47032 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46956 * 119.99280 * 3 2 1 7 7 C 1.37878 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99771 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00192 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47180 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47012 * 305.00231 * 10 9 7 12 12 N 1.46903 * 109.47058 * 65.00028 * 10 9 7 13 13 C 1.50699 * 109.47170 * 184.99839 * 10 9 7 14 14 C 1.39421 * 120.20662 * 286.84766 * 13 10 9 15 15 C 1.46789 * 134.32632 * 359.97438 * 14 13 10 16 16 C 1.33993 * 106.18626 * 179.97438 * 15 14 13 17 17 O 1.34450 * 110.15427 * 0.02562 * 16 15 14 18 18 C 1.34854 * 110.88861 * 359.97438 * 17 16 15 19 19 C 1.38926 * 133.39805 * 179.97438 * 18 17 16 20 20 C 1.37804 * 119.97795 * 180.02562 * 19 18 17 21 21 C 1.37826 * 120.20428 * 106.57168 * 13 10 9 22 22 Cl 1.73601 * 119.87455 * 0.02562 * 21 13 10 23 23 H 0.97003 * 120.00027 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47047 * 59.99966 * 9 7 2 25 25 H 1.09000 * 109.47461 * 299.99614 * 9 7 2 26 26 H 1.00900 * 111.00414 * 53.17361 * 12 10 9 27 27 H 1.00902 * 110.99741 * 177.12461 * 12 10 9 28 28 H 1.07993 * 126.90404 * 359.97438 * 15 14 13 29 29 H 1.08000 * 124.92520 * 179.97438 * 16 15 14 30 30 H 1.08000 * 120.00506 * 0.02562 * 19 18 17 31 31 H 1.07999 * 119.66002 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9294 -3.5552 -0.8412 12 7 3.0083 -3.6539 1.2558 13 6 1.4958 -4.9637 -0.1233 14 6 0.7685 -5.4599 0.9578 15 6 0.5192 -4.9933 2.3270 16 6 -0.2696 -5.9141 2.8976 17 8 -0.5342 -6.9021 2.0250 18 6 0.0697 -6.6728 0.8413 19 6 0.1123 -7.3703 -0.3595 20 6 0.8349 -6.8702 -1.4210 21 6 1.5205 -5.6680 -1.3077 22 17 2.4184 -5.0537 -2.6605 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6240 -2.5568 0.8903 26 1 2.3913 -3.6397 2.0540 27 1 3.6392 -4.4401 1.3005 28 1 0.8958 -4.0896 2.7829 29 1 -0.6385 -5.8694 3.9116 30 1 -0.4208 -8.3041 -0.4609 31 1 0.8641 -7.4165 -2.3522 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260461121.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:48 Heat of formation + Delta-G solvation = 18.212276 kcal Electronic energy + Delta-G solvation = -17609.109364 eV Core-core repulsion = 14689.549882 eV Total energy + Delta-G solvation = -2919.559482 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.35420 -38.44509 -36.04223 -35.39141 -32.66616 -31.92696 -29.88731 -29.14342 -28.14700 -24.48697 -22.90205 -22.36535 -21.12922 -19.97543 -17.36408 -16.86909 -16.37519 -15.99231 -15.81000 -15.09697 -14.45821 -14.24860 -14.04125 -13.21585 -13.02549 -12.83270 -12.54313 -12.21773 -12.08784 -11.41082 -11.17029 -11.00377 -10.94279 -10.58616 -10.54263 -10.14045 -10.04134 -9.41964 -9.09194 -8.34888 -8.29217 -8.07006 -7.84937 -5.90712 -3.89820 0.97274 1.30785 2.38394 2.46662 2.87068 3.40990 3.44200 3.48139 3.68100 4.53469 4.57601 4.73293 5.03384 5.18396 5.31634 5.34260 5.37014 5.47369 5.72673 5.88607 6.04576 6.16467 6.23405 6.40966 6.51255 6.59890 6.81307 7.19127 7.54270 7.69421 7.95902 8.08694 8.16502 8.51746 9.16013 9.72066 11.20855 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.019616 B = 0.006953 C = 0.005669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.068231 B = 4026.093367 C = 4937.615088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.052 3.948 3 Si 0.893 3.107 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.495 4.495 8 H 0.063 0.937 9 C 0.040 3.960 10 C 0.124 3.876 11 H 0.092 0.908 12 N -0.818 5.818 13 C -0.039 4.039 14 C -0.117 4.117 15 C -0.193 4.193 16 C -0.003 4.003 17 O -0.197 6.197 18 C 0.053 3.947 19 C -0.112 4.112 20 C -0.082 4.082 21 C -0.057 4.057 22 Cl -0.059 7.059 23 H 0.259 0.741 24 H 0.020 0.980 25 H 0.017 0.983 26 H 0.335 0.665 27 H 0.321 0.679 28 H 0.165 0.835 29 H 0.209 0.791 30 H 0.136 0.864 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.563 -15.291 1.852 15.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.148 4.148 3 Si 0.721 3.279 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.534 4.534 8 H 0.081 0.919 9 C 0.003 3.997 10 C 0.013 3.987 11 H 0.110 0.890 12 N -0.346 5.346 13 C -0.042 4.042 14 C -0.119 4.119 15 C -0.212 4.212 16 C -0.067 4.067 17 O -0.099 6.099 18 C 0.006 3.994 19 C -0.131 4.131 20 C -0.101 4.101 21 C -0.085 4.085 22 Cl -0.030 7.030 23 H 0.068 0.932 24 H 0.038 0.962 25 H 0.036 0.964 26 H 0.150 0.850 27 H 0.132 0.868 28 H 0.182 0.818 29 H 0.225 0.775 30 H 0.153 0.847 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.638 -14.609 1.539 14.704 hybrid contribution -0.088 0.243 0.118 0.284 sum 0.550 -14.366 1.657 14.472 Atomic orbital electron populations 1.69967 1.05996 1.26469 1.51749 1.25012 0.94801 0.99138 0.95848 0.86642 0.79464 0.83171 0.78587 1.20388 1.21615 1.20300 1.21102 0.93395 0.89907 1.48973 0.91882 1.19116 0.92703 0.90462 0.97415 1.21054 0.95128 0.89264 0.93291 0.88964 1.58994 1.23238 1.48472 1.03915 1.20790 0.95487 0.97986 0.89942 1.19603 1.01417 0.95741 0.95096 1.22674 1.03708 1.01835 0.92971 1.23933 1.00036 0.87478 0.95246 1.83987 1.61833 1.44335 1.19708 1.19660 0.96651 0.96118 0.86988 1.19646 1.03494 1.01089 0.88876 1.20726 0.96257 0.94513 0.98592 1.20532 1.01667 0.96355 0.89906 1.98355 1.73650 1.87505 1.43516 0.93191 0.96181 0.96427 0.85000 0.86802 0.81789 0.77491 0.84657 0.84141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 2 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 3 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.50 -14.01 8.84 -34.44 -0.30 -14.32 16 8 H 0.06 1.78 7.74 -52.48 -0.41 1.38 16 9 C 0.04 1.03 4.47 -27.89 -0.12 0.91 16 10 C 0.12 2.58 2.75 -68.86 -0.19 2.39 16 11 H 0.09 1.99 6.33 -51.93 -0.33 1.66 16 12 N -0.82 -15.44 8.82 -5.65 -0.05 -15.49 16 13 C -0.04 -0.71 4.90 -104.33 -0.51 -1.22 16 14 C -0.12 -2.02 5.87 -105.16 -0.62 -2.63 16 15 C -0.19 -2.93 9.65 -37.62 -0.36 -3.30 16 16 C 0.00 -0.03 11.96 29.24 0.35 0.32 16 17 O -0.20 -2.83 10.58 3.78 0.04 -2.79 16 18 C 0.05 0.83 7.41 -38.49 -0.29 0.55 16 19 C -0.11 -1.50 10.06 -39.49 -0.40 -1.90 16 20 C -0.08 -1.12 9.79 -39.51 -0.39 -1.51 16 21 C -0.06 -0.95 6.31 -39.50 -0.25 -1.20 16 22 Cl -0.06 -0.96 27.05 -51.86 -1.40 -2.36 16 23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.02 0.48 7.83 -51.93 -0.41 0.07 16 26 H 0.33 6.02 5.64 -39.29 -0.22 5.80 16 27 H 0.32 5.23 9.00 -39.29 -0.35 4.88 16 28 H 0.16 2.45 6.33 -52.49 -0.33 2.12 16 29 H 0.21 1.62 8.06 -52.49 -0.42 1.19 16 30 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 31 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 281.55 15.07 4.24 4.24 Total: -1.00 -31.92 281.55 -7.50 -39.43 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -2.87 Total: 6.85 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -3.18 Total: -20.51 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.69 Total: -42.00 kcal Atomic # 8 Polarization: -2.83 SS G_CDS: 0.04 Total: -2.79 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.40 Total: -2.36 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.92 -7.50 -39.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260461121.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.639 kcal (2) G-P(sol) polarization free energy of solvation -31.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds